View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6337_high_8 (Length: 241)

Name: NF6337_high_8
Description: NF6337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6337_high_8
NF6337_high_8
[»] chr3 (31 HSPs)
chr3 (1-223)||(28422404-28422626)
chr3 (29-218)||(11474825-11475015)
chr3 (31-223)||(8402493-8402684)
chr3 (38-218)||(18474159-18474338)
chr3 (6-218)||(33914513-33914721)
chr3 (32-218)||(26387791-26387977)
chr3 (47-223)||(26297746-26297920)
chr3 (62-191)||(13911277-13911407)
chr3 (118-218)||(27415236-27415337)
chr3 (32-147)||(21829149-21829265)
chr3 (29-218)||(21017856-21018046)
chr3 (79-218)||(12573319-12573459)
chr3 (79-218)||(13549783-13549923)
chr3 (96-218)||(2729564-2729687)
chr3 (116-218)||(19219157-19219260)
chr3 (18-133)||(19546015-19546125)
chr3 (117-218)||(11521206-11521308)
chr3 (29-148)||(25188737-25188856)
chr3 (91-218)||(33577775-33577902)
chr3 (61-218)||(1475225-1475384)
chr3 (84-209)||(5632497-5632614)
chr3 (79-218)||(27374399-27374537)
chr3 (80-190)||(30493238-30493349)
chr3 (81-218)||(23908217-23908354)
chr3 (93-218)||(25919417-25919534)
chr3 (154-218)||(16970566-16970630)
chr3 (34-130)||(19285084-19285179)
chr3 (164-219)||(10341901-10341956)
chr3 (164-218)||(18065911-18065965)
chr3 (80-172)||(23007057-23007150)
chr3 (173-209)||(26484792-26484828)
[»] chr7 (38 HSPs)
chr7 (5-223)||(30405551-30405767)
chr7 (18-201)||(7372528-7372709)
chr7 (11-191)||(7361605-7361787)
chr7 (33-212)||(24596956-24597135)
chr7 (32-193)||(17881470-17881631)
chr7 (18-148)||(4828759-4828890)
chr7 (116-218)||(7142164-7142267)
chr7 (33-223)||(4977761-4977952)
chr7 (61-218)||(1255159-1255317)
chr7 (93-223)||(23124943-23125074)
chr7 (2-161)||(37144872-37145032)
chr7 (32-218)||(3268912-3269098)
chr7 (29-218)||(29544498-29544688)
chr7 (12-218)||(9755762-9755962)
chr7 (33-218)||(9800579-9800758)
chr7 (29-162)||(18496544-18496678)
chr7 (92-218)||(5312732-5312858)
chr7 (116-218)||(7815389-7815492)
chr7 (116-218)||(9761361-9761464)
chr7 (93-218)||(10292797-10292923)
chr7 (32-218)||(22067748-22067939)
chr7 (93-215)||(8308981-8309103)
chr7 (116-218)||(9801820-9801923)
chr7 (61-218)||(1074463-1074621)
chr7 (66-218)||(20461594-20461746)
chr7 (32-121)||(8606051-8606140)
chr7 (59-207)||(20470767-20470916)
chr7 (137-218)||(21471884-21471965)
chr7 (62-193)||(12358733-12358864)
chr7 (158-215)||(2630425-2630482)
chr7 (29-71)||(16536668-16536710)
chr7 (29-71)||(16577366-16577408)
chr7 (29-71)||(16588254-16588296)
chr7 (29-71)||(16628952-16628994)
chr7 (149-218)||(3487312-3487380)
chr7 (165-218)||(7494812-7494865)
chr7 (79-147)||(21545816-21545885)
chr7 (32-223)||(22532586-22532776)
[»] chr8 (33 HSPs)
chr8 (18-190)||(24584698-24584871)
chr8 (29-218)||(10866967-10867156)
chr8 (37-218)||(14424759-14424940)
chr8 (37-218)||(30851046-30851227)
chr8 (59-218)||(32239296-32239456)
chr8 (29-215)||(29291750-29291935)
chr8 (2-214)||(11437371-11437583)
chr8 (32-223)||(5153740-5153931)
chr8 (134-218)||(16052223-16052307)
chr8 (32-223)||(30543745-30543934)
chr8 (29-223)||(35135362-35135558)
chr8 (61-221)||(27097743-27097905)
chr8 (93-218)||(28902132-28902258)
chr8 (37-223)||(13583461-13583637)
chr8 (34-191)||(31436463-31436620)
chr8 (29-161)||(12956468-12956601)
chr8 (90-218)||(28074554-28074681)
chr8 (61-218)||(16054305-16054463)
chr8 (137-207)||(26882496-26882566)
chr8 (61-148)||(14977122-14977211)
chr8 (108-218)||(22894477-22894587)
chr8 (93-218)||(29047265-29047391)
chr8 (80-212)||(5570093-5570226)
chr8 (133-218)||(28260236-28260320)
chr8 (32-212)||(6888145-6888322)
chr8 (28-193)||(13530077-13530242)
chr8 (28-193)||(13619616-13619781)
chr8 (116-218)||(13081880-13081986)
chr8 (91-212)||(12774795-12774917)
chr8 (153-218)||(24696685-24696750)
chr8 (133-218)||(28859185-28859270)
chr8 (139-215)||(12358691-12358766)
chr8 (29-129)||(41505573-41505673)
[»] chr4 (29 HSPs)
chr4 (18-223)||(19601766-19601972)
chr4 (29-223)||(10576432-10576626)
chr4 (29-223)||(29437448-29437644)
chr4 (61-218)||(34864241-34864395)
chr4 (32-217)||(23353605-23353789)
chr4 (116-218)||(15192269-15192372)
chr4 (29-218)||(9782929-9783119)
chr4 (116-218)||(17026642-17026745)
chr4 (29-218)||(21077212-21077401)
chr4 (29-223)||(33519019-33519203)
chr4 (32-193)||(21167711-21167872)
chr4 (62-212)||(27302790-27302940)
chr4 (29-218)||(9288189-9288378)
chr4 (90-218)||(13064466-13064594)
chr4 (29-183)||(22119625-22119779)
chr4 (164-218)||(18898097-18898151)
chr4 (62-218)||(25315177-25315334)
chr4 (29-218)||(46647175-46647363)
chr4 (133-223)||(31859842-31859931)
chr4 (153-218)||(12111272-12111336)
chr4 (93-200)||(10320183-10320291)
chr4 (164-218)||(47024711-47024765)
chr4 (91-219)||(26159797-26159925)
chr4 (119-218)||(5676268-5676368)
chr4 (171-215)||(13206625-13206669)
chr4 (32-147)||(24925787-24925903)
chr4 (93-219)||(13275690-13275816)
chr4 (178-212)||(19217913-19217947)
chr4 (144-200)||(12243691-12243746)
[»] chr2 (35 HSPs)
chr2 (18-218)||(27917929-27918130)
chr2 (29-223)||(19541016-19541210)
chr2 (2-134)||(29647576-29647708)
chr2 (18-223)||(22510915-22511119)
chr2 (61-218)||(17152164-17152322)
chr2 (123-218)||(27417209-27417305)
chr2 (29-218)||(22388704-22388888)
chr2 (29-148)||(17415211-17415331)
chr2 (32-218)||(24047364-24047550)
chr2 (29-162)||(32276515-32276649)
chr2 (79-218)||(24187995-24188138)
chr2 (91-218)||(39730488-39730615)
chr2 (96-218)||(18236249-18236371)
chr2 (12-214)||(21505089-21505292)
chr2 (29-218)||(34063787-34063975)
chr2 (91-215)||(18117024-18117147)
chr2 (29-160)||(21843006-21843138)
chr2 (79-218)||(21849020-21849158)
chr2 (117-215)||(25474104-25474203)
chr2 (164-218)||(15829236-15829290)
chr2 (61-218)||(30998782-30998940)
chr2 (119-218)||(16593696-16593796)
chr2 (62-217)||(35031714-35031870)
chr2 (29-209)||(17240812-17240989)
chr2 (153-223)||(17415104-17415173)
chr2 (32-219)||(18818679-18818866)
chr2 (164-219)||(1733206-1733261)
chr2 (29-147)||(21844646-21844765)
chr2 (153-215)||(35707907-35707969)
chr2 (29-201)||(28278386-28278559)
chr2 (164-213)||(32619744-32619793)
chr2 (173-215)||(14921988-14922030)
chr2 (144-218)||(19949500-19949574)
chr2 (29-74)||(22525743-22525789)
chr2 (32-197)||(31449939-31450104)
[»] chr1 (27 HSPs)
chr1 (79-219)||(25727854-25727995)
chr1 (79-219)||(25736262-25736403)
chr1 (62-218)||(26657488-26657645)
chr1 (59-218)||(30675493-30675653)
chr1 (2-223)||(52271186-52271406)
chr1 (29-223)||(15298811-15299005)
chr1 (29-219)||(31313531-31313721)
chr1 (93-218)||(25730517-25730643)
chr1 (29-218)||(30781739-30781929)
chr1 (32-223)||(25126462-25126653)
chr1 (29-214)||(26102036-26102221)
chr1 (32-214)||(34381690-34381875)
chr1 (61-191)||(23223422-23223554)
chr1 (28-214)||(11769944-11770131)
chr1 (37-223)||(19257745-19257931)
chr1 (29-218)||(18795160-18795349)
chr1 (137-214)||(8247607-8247684)
chr1 (29-189)||(50047160-50047321)
chr1 (79-218)||(18300949-18301089)
chr1 (164-218)||(23521675-23521729)
chr1 (34-111)||(21550933-21551010)
chr1 (164-218)||(23519714-23519768)
chr1 (164-209)||(25494443-25494488)
chr1 (91-218)||(15416920-15417047)
chr1 (93-180)||(25266329-25266417)
chr1 (79-148)||(19884201-19884271)
chr1 (62-145)||(12810334-12810418)
[»] scaffold0065 (2 HSPs)
scaffold0065 (120-221)||(12315-12416)
scaffold0065 (12-137)||(12064-12189)
[»] chr5 (36 HSPs)
chr5 (93-217)||(16634089-16634214)
chr5 (29-145)||(23157807-23157924)
chr5 (29-218)||(26070453-26070642)
chr5 (36-192)||(19331497-19331651)
chr5 (29-219)||(20083445-20083636)
chr5 (32-218)||(20694622-20694808)
chr5 (62-218)||(24841765-24841922)
chr5 (133-218)||(11274276-11274361)
chr5 (18-187)||(16603590-16603758)
chr5 (32-218)||(17381990-17382168)
chr5 (79-212)||(17027556-17027690)
chr5 (93-214)||(18222536-18222658)
chr5 (31-218)||(24517335-24517514)
chr5 (37-215)||(7742819-7742997)
chr5 (4-66)||(25367574-25367636)
chr5 (91-195)||(11997863-11997968)
chr5 (63-223)||(24410871-24411031)
chr5 (79-218)||(22229833-22229973)
chr5 (65-207)||(15205658-15205801)
chr5 (19-69)||(18873118-18873168)
chr5 (79-215)||(19763842-19763976)
chr5 (153-218)||(25075258-25075323)
chr5 (153-218)||(25133227-25133292)
chr5 (116-218)||(26330015-26330116)
chr5 (32-218)||(30790763-30790944)
chr5 (113-218)||(12339960-12340066)
chr5 (29-74)||(22643955-22644000)
chr5 (119-211)||(22754963-22755056)
chr5 (79-214)||(25594642-25594778)
chr5 (164-219)||(16622621-16622676)
chr5 (120-193)||(25367664-25367737)
chr5 (91-123)||(4325399-4325431)
chr5 (69-148)||(24268574-24268654)
chr5 (69-148)||(24345203-24345283)
chr5 (79-161)||(25680625-25680708)
chr5 (93-189)||(29150882-29150977)
[»] scaffold0337 (2 HSPs)
scaffold0337 (120-221)||(1879-1980)
scaffold0337 (12-137)||(1628-1753)
[»] chr6 (22 HSPs)
chr6 (120-221)||(24507385-24507486)
chr6 (12-137)||(24507612-24507737)
chr6 (79-218)||(17860394-17860534)
chr6 (38-214)||(14768219-14768395)
chr6 (47-206)||(9943108-9943267)
chr6 (32-189)||(26512753-26512910)
chr6 (32-189)||(26517869-26518026)
chr6 (32-218)||(32930419-32930605)
chr6 (29-218)||(9396553-9396735)
chr6 (29-214)||(12972335-12972520)
chr6 (29-218)||(15574904-15575093)
chr6 (61-206)||(16387213-16387352)
chr6 (137-214)||(15998599-15998676)
chr6 (171-218)||(33638451-33638498)
chr6 (71-216)||(24617533-24617677)
chr6 (61-148)||(13759467-13759555)
chr6 (29-129)||(13835580-13835680)
chr6 (164-218)||(22262456-22262510)
chr6 (29-189)||(14924393-14924553)
chr6 (92-208)||(16439501-16439616)
chr6 (61-129)||(13830870-13830938)
chr6 (116-223)||(26499788-26499895)
[»] scaffold1149 (1 HSPs)
scaffold1149 (12-191)||(1747-1926)
[»] scaffold0190 (1 HSPs)
scaffold0190 (32-222)||(11640-11830)
[»] scaffold0011 (1 HSPs)
scaffold0011 (53-218)||(228132-228296)
[»] scaffold0043 (1 HSPs)
scaffold0043 (29-148)||(58724-58844)
[»] scaffold0386 (2 HSPs)
scaffold0386 (120-218)||(13017-13116)
scaffold0386 (93-206)||(8667-8781)
[»] scaffold0188 (1 HSPs)
scaffold0188 (113-214)||(26905-27007)
[»] scaffold0171 (2 HSPs)
scaffold0171 (79-218)||(21426-21566)
scaffold0171 (113-218)||(6259-6364)
[»] scaffold0185 (1 HSPs)
scaffold0185 (29-193)||(1422-1586)
[»] scaffold1026 (1 HSPs)
scaffold1026 (2-218)||(1780-1994)
[»] scaffold0002 (1 HSPs)
scaffold0002 (137-218)||(447064-447145)
[»] scaffold0650 (1 HSPs)
scaffold0650 (168-223)||(5710-5765)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28422404 - 28422626
Alignment:
Q  1 tatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28422404 tatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattg 28422503  T
Q  101 tttttattcgaatcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatca 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  28422504 ttttcattcgaatcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtagatcgacaaatca 28422603  T
Q  201 atacatcacgtgaaggattgagg 223  Q
    |||||||||||||||||||||||    
T  28422604 atacatcacgtgaaggattgagg 28422626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 11474825 - 11475015
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||| || |||||||||| ||||||  ||| |||| | |||  | |||||||||| |||||||||| |||| |||||| || |||||||||| ||    
T  11474825 ttctttgcacttaaaggaaaattggaagtcgtttaaaggactagtcaatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaatt 11474924  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||| ||||||||||||||  ||  ||||||||| | |||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  11474925 ttatcctaaatcatgcaacttcatatgtgttttgagtcttttttagtgagaaatcatgtaaatcggcaaaacaagacatcacatgaaggat 11475015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 223
Target Start/End: Complemental strand, 8402684 - 8402493
Alignment:
Q  31 ctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt 130  Q
    ||||||||||||||| |||| ||| || | ||||||||||||||  | ||||||||||   ||||||||||||| |||||| || |||||||||| ||||    
T  8402684 ctttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaattcattttt 8402585  T
Q  131 atc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    ||| ||||||||||||||| || ||||||||||  || || ||| ||| |||| |||||||||  | ||||| |||||| ||||||||| ||||    
T  8402584 atcttaaatcatgcaactccataggtgttttga--gtcttttagcgaggaatcgtgtaaatcgatagatcaagacatcaagtgaaggatcgagg 8402493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 18474159 - 18474338
Alignment:
Q  38 tttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaa 136  Q
    |||||||  |||||||||||||||||||||| || ||  | |||||||||| |  |||||||| ||| |||||| ||||||||||||||| |||| ||||    
T  18474159 tttgaagacaaattagaagtcaattagaggatttatcaatcgtttgaggaactgattgtattg-tttcattcgattcattgtaattcactgttatcctaa 18474257  T
Q  137 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||||| || |||||||||| | ||||  |||||||||||||||||||||| ||  ||| |||| || ||||||||    
T  18474258 atcatgcaactccataggtgttttgagtctttt-cagtgagaaatcatgtaaatcgggaacacaagacattacatgaaggat 18474338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 33914721 - 33914513
Alignment:
Q  6 tttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgttttt 105  Q
    ||||||||||| |||||||    |||||||||||| |||  |||| ||| |  | ||| ||||||||||    ||||||||||  | |||||||||||||    
T  33914721 tttttactatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtattgttttt 33914622  T
Q  106 attcgaatcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaataca 205  Q
    | |||| || ||||||||||| ||   | |||||||||||||| ||    ||||||| ||||||||||||||||||||||||||||| | |||||| |||    
T  33914621 actcgagtcgttgtaattcacgttatcccaaatcatgcaactctat----gttttgagtgttttgtagtgagaaatcatgtaaatcgacgaatcaagaca 33914526  T
Q  206 tcacgtgaaggat 218  Q
    |||||||||||||    
T  33914525 tcacgtgaaggat 33914513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 26387977 - 26387791
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||| ||||||||||| |||||||| |||||||  | ||||||| ||  ||||||||| |||| ||| |  || | |||||| | |||||    
T  26387977 tttgcatttgaaggcaaattagaagtaaattagagtagttgtcaatggtttgagaaacgttttgtattcttttcatttgtgtcgtagtaattaagtttta 26387878  T
Q  132 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    | |||||||||||||||| || | |||||||| | |||| || |||||||||||||||||| || || ||| |||||| |||||||||    
T  26387877 tcctaaatcatgcaactccatagatgttttgagtctttt-taatgagaaatcatgtaaatcagctaaacaagacatcaagtgaaggat 26387791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 26297746 - 26297920
Alignment:
Q  47 aaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaa 145  Q
    ||||||||||||| |||||||||||||   | ||||||| || ||||| ||||||||| |||||| || |||||||||| |||||| |||||||||||||    
T  26297746 aaattagaagtcagttagaggagttgttaatggtttgagaaactttttatattgttttcattcgagtcgttgtaattcaattttatcctaaatcatgcaa 26297845  T
Q  146 ctcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    ||  ||   ||| |||| | | || |||||| |||||||||||||||||||| ||| |||||| ||||||||| ||||    
T  26297846 cttcat--atgtgttgagtctatt-tagtgataaatcatgtaaatcggcaaaacaagacatcaagtgaaggatcgagg 26297920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 13911277 - 13911407
Alignment:
Q  62 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 160  Q
    |||| ||||||||  | ||||||||||  | | |||||||||| | | |||||||||||||||||||||||| || |||||||||||  ||  |||||||    
T  13911277 tagaagagttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgcaacttcatatgtgtttt 13911376  T
Q  161 gaatgttttgtagtgagaaatcatgtaaatc 191  Q
     | ||||||||||||||||||||||||||||    
T  13911377 tagtgttttgtagtgagaaatcatgtaaatc 13911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 27415236 - 27415337
Alignment:
Q  118 gtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaagg 216  Q
    |||||||||||||||| ||||||||||||||  || |||||||||| ||||||||||| ||||||||||||||| | | |||||| ||||||| | ||||    
T  27415236 gtaattcacttttatcgtaaatcatgcaacttcataggtgttttgagtgttttgtagtaagaaatcatgtaaatagaccaatcaagacatcacataaagg 27415335  T
Q  217 at 218  Q
    ||    
T  27415336 at 27415337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 21829265 - 21829149
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||  | ||||||||||  ||||||||| |||| ||| || || |||||||||| |||||    
T  21829265 tttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacattttgtattattttcatttgagtcgttgtaattcagtttta 21829166  T
Q  132 t-ctaaatcatgcaact 147  Q
    | ||||||||| |||||    
T  21829165 tcctaaatcatacaact 21829149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 21017856 - 21018046
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||||||||||||| ||||| ||| |  | |||||||||||| |  |  |||||||||  | || |||| |||| |  ||| || |||||||||| ||    
T  21017856 ttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatattattttcaaccgagtcgttgtaattcagtt 21017955  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||| || |||||||||||| |   ||||||||| ||||||||| ||||||||||||||| ||  |||||||| |||| |||||||||||    
T  21017956 ttatcctagatcatgcaactctaaatgtgttttgagtgttttgtattgagaaatcatgtaattcaacaaatcaagacattacgtgaaggat 21018046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 12573319 - 12573459
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    |||||||||||  ||||||||||||| | ||||  | |||||||||| ||||||| || |||||||| |||  | ||| |||| | ||||||||||||||    
T  12573319 gtttgaggaatgctttgtattgttttcactcgagacgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgag 12573418  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
     |||||||||||||  ||||| || |||| |||||||||||    
T  12573419 gaatcatgtaaatcaacaaatgaagacattacgtgaaggat 12573459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 13549783 - 13549923
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    |||||||||||  ||||||||||||| | ||||  | |||||||||| ||||||| || |||||||| |||  | ||| |||| | ||||||||||||||    
T  13549783 gtttgaggaatgctttgtattgttttcactcgagacgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgag 13549882  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
     |||||||||||||  ||||| || |||| |||||||||||    
T  13549883 gaatcatgtaaatcaacaaatgaagacattacgtgaaggat 13549923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 2729687 - 2729564
Alignment:
Q  96 tattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggc 194  Q
    ||||||||| | |||| || |||||||||| ||||||| |||| |||||||||  ||  ||||||||| ||||||||||||| ||||| |||||||||      
T  2729687 tattgttttcactcgagtccttgtaattcatttttatcctaaaccatgcaacttcatatgtgttttgagtgttttgtagtgataaatcttgtaaatcgaa 2729588  T
Q  195 aaatcaatacatcacgtgaaggat 218  Q
    |||| || ||||||||| ||||||    
T  2729587 aaattaagacatcacgtcaaggat 2729564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 19219260 - 19219157
Alignment:
Q  116 ttgtaattcacttttatctaaa-tcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||||||||||| ||| ||||||||| | ||   |||||||| |||||||||||||| |||||||||||||  |||| ||| ||||||| ||||    
T  19219260 ttgtaattcacttttatccaaaatcatgcaacaccataaatgttttgagtgttttgtagtgaggaatcatgtaaatcttcaaaccaagacatcacatgaa 19219161  T
Q  215 ggat 218  Q
    ||||    
T  19219160 ggat 19219157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 19546125 - 19546015
Alignment:
Q  18 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 117  Q
    |||||||||| ||||||||||||||||| |||||||||||||||     |  || ||  | |||||||||| || |||||||||||||||| || |||||    
T  19546125 ttttagtgtatttctttgcatttgaaggcaaattagaagtcaat-----ggtttatcaatggtttgaggaacttattgtattgtttttatttgagtcatt 19546031  T
Q  118 gtaattcacttttatc 133  Q
    |||||||||| |||||    
T  19546030 gtaattcactattatc 19546015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 11521206 - 11521308
Alignment:
Q  117 tgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    ||||||||| ||||||| || ||||||||| || || | |||||||| |||||||||||||| |||||||||||||  |||||||| |||| ||||| ||    
T  11521206 tgtaattcagttttatcctagatcatgcaagtccatagttgttttgagtgttttgtagtgaggaatcatgtaaatcaacaaatcaaaacattacgtggag 11521305  T
Q  216 gat 218  Q
    |||    
T  11521306 gat 11521308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 25188737 - 25188856
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||  |||| ||| |||| |||||||| ||| |  | ||||| ||||| ||||  ||| || | |||||||||||||||||||||||    
T  25188737 ttctttgcatttgaagacaaataagaggtcatttagaggaattgacaatggtttgtggaatgttttaaatt-ttctcattcgaatcattgtaattcactt 25188835  T
Q  129 ttatc-taaatcatgcaactc 148  Q
    ||||| |||||||||||||||    
T  25188836 ttatcataaatcatgcaactc 25188856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 33577775 - 33577902
Alignment:
Q  91 ttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    |||||||||||||||||| || ||||||||||||| || ||| ||||||||||||||   ||||||| ||||| | |||| ||  || ||| ||||||||    
T  33577775 ttttgtattgtttttatttgattcattgtaattcatttatatcctaaatcatgcaacctcattggtggtttgagtctttt-taaagaaaaaacatgtaaa 33577873  T
Q  190 tcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||  || ||||||| ||||||||    
T  33577874 tcggcaaagtaagacatcacatgaaggat 33577902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 1475384 - 1475225
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgt-t 158  Q
    ||||||||||| ||  | ||||||||||| | ||||||| |||| | |||| || |||||||||| || ||| ||| |||||||||||| || ||| | |    
T  1475384 ttagaggagttttcaatggtttgaggaatatattgtattattttcactcgagtcgttgtaattcaattatatcctagatcatgcaactccatgggtatat 1475285  T
Q  159 ttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||| ||||| |||||||  ||| |||||||||  |||||||| |||||| |||||||||    
T  1475284 ttgagtgtttcgtagtgaagaataatgtaaatcatcaaatcaagacatcatgtgaaggat 1475225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 5632614 - 5632497
Alignment:
Q  84 aggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatc 182  Q
    ||||| ||||||| ||||||| ||| || || |||||||||||||||||| | ||||||||||||| || ||         |||||||||||||||||||    
T  5632614 aggaagtttttgtgttgttttcatttgattcgttgtaattcacttttatcttgaatcatgcaactccatagg---------tgttttgtagtgagaaatc 5632524  T
Q  183 atgtaaatcggcaaatcaatacatcac 209  Q
    |||||||||| |||| ||| |||||||    
T  5632523 atgtaaatcgacaaaccaagacatcac 5632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 27374537 - 27374399
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    |||| ||||| ||||||||||||||| |||||| ||||| |||| || |||||| |||||||||||||||   | |||  ||||||| |||  ||||| |    
T  27374537 gtttaaggaagtttttgtattgttttcattcgagtcattataatccagttttatcctaaatcatgcaacttcgtaggttatttgaatcttt--tagtgcg 27374440  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||| ||| |||||| ||| | |||| |||||||||    
T  27374439 aaatcatgtgaattggcaaaacaagagatcatgtgaaggat 27374399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 30493349 - 30493238
Alignment:
Q  80 tttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgag- 177  Q
    |||||| || ||||||||||||||| |||||| || ||||| || | |||||| ||||||||||||| || || |||||||||| | |||| |||||||     
T  30493349 tttgagaaactttttgtattgttttcattcgagtcgttgtagtttagttttatcctaaatcatgcaaatccatgggtgttttgagtctttt-tagtgaga 30493251  T
Q  178 aaatcatgtaaat 190  Q
    |||||||||||||    
T  30493250 aaatcatgtaaat 30493238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 23908354 - 23908217
Alignment:
Q  81 ttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaa 179  Q
    ||||||||  |||||||||||||| |||||| || ||||||||| ||||||| | |||| |||||| |  || |||| ||||| |  ||| ||| |||||    
T  23908354 ttgaggaacattttgtattgttttcattcgattcgttgtaattcccttttatccaaaataatgcaatttcataggtgctttgagt-ctttctagggagaa 23908256  T
Q  180 atcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||| ||||||| ||| ||||| | ||||||||    
T  23908255 atcatgtaaagcggcaaagcaagacatctcatgaaggat 23908217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 25919534 - 25919417
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||| ||||||||| | || |||| |||||||||||||||| ||||||||||||||| || |         ||||||||||||||| |||||||||||||    
T  25919534 ttgtgttgtttttacttgagtcatcgtaattcacttttatcctaaatcatgcaactccatag---------atgttttgtagtgaggaatcatgtaaatc 25919444  T
Q  192 ggcaaatcaatacatcacgtgaaggat 218  Q
    | |||| ||| | ||||| ||||||||    
T  25919443 gacaaaccaagatatcacatgaaggat 25919417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 16970566 - 16970630
Alignment:
Q  154 gtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||| || |||||||||||  | |||||||||||||| |||||||| |||||| |||||||||    
T  16970566 gtgtttagagtgttttgtagtagggaatcatgtaaatcgacaaatcaagacatcatgtgaaggat 16970630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 19285084 - 19285179
Alignment:
Q  34 tgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt 130  Q
    ||||||||| || ||||||||||||| ||||||||||||||  | || ||| |||  ||||||||| |||| |||||| || |||||||||| ||||    
T  19285084 tgcatttgagggtaaattagaagtcatttagaggagttgtcaatagtatga-gaaaattttgtattattttcattcgagtcgttgtaattcaatttt 19285179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 10341901 - 10341956
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    |||||||| |||||||||||||||||||  |||||| | |||||| ||||||||||    
T  10341901 tgttttgttgtgagaaatcatgtaaatcaacaaatccaaacatcaagtgaaggatt 10341956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 18065911 - 18065965
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||| ||||||||||||||| | |||||||| ||||||| | ||||||    
T  18065911 tgttttgtagtaagaaatcatgtaaatagacaaatcaagacatcacataaaggat 18065965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 23007150 - 23007057
Alignment:
Q  80 tttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgta 172  Q
    |||||||||| | ||||||||||||   |||| ||||| ||| |||||||||| ||||||||| |||||| || | |||||||| |||| ||||    
T  23007150 tttgaggaatatattgtattgttttccctcgagtcattataaatcacttttatcctaaatcatacaactccatagatgttttgagtgttatgta 23007057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 26484792 - 26484828
Alignment:
Q  173 gtgagaaatcatgtaaatcggcaaatcaatacatcac 209  Q
    |||| |||||||||||||||||||||||| |||||||    
T  26484792 gtgataaatcatgtaaatcggcaaatcaagacatcac 26484828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 30405551 - 30405767
Alignment:
Q  5 ttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttt 104  Q
    |||||| ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||   | |||||||||| |||||||||||||||    
T  30405551 ttttttgctatgtttctagtgtaattctttgcatttgaaggtaaattagaagtcaattagaggagttgttaatggtttgaggaactttttgtattgtttt 30405650  T
Q  105 tattcgaatcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatac 204  Q
    |||| || |||||||||||||||||   ||||| |||||||||| || ||||||||||  ||||| |||||||||||||||||||||||||||  || |     
T  30405651 tatttgactcattgtaattcactttatcctaaaccatgcaactccataggtgttttga--gttttttagtgagaaatcatgtaaatcggcaaaataagaa 30405748  T
Q  205 atcacgtgaaggattgagg 223  Q
    |||| ||||||||| ||||    
T  30405749 atcatgtgaaggatcgagg 30405767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 7372709 - 7372528
Alignment:
Q  18 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 117  Q
    |||||||||||||||||||||||||||| |||||||||    ||||||||||||||| || |||||| ||| ||||||||||||||| |||||| || ||    
T  7372709 ttttagtgtaattctttgcatttgaaggtaaattagaa----attagaggagttgtcattggtttgatgaactttttgtattgttttcattcgagtcgtt 7372614  T
Q  118 gtaattcacttttat--ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaa 201  Q
    |||||||| ||||||  | |||||||||||||  || |||||||| | |||||| |||||||||||| |||||||| |||||||||    
T  7372613 gtaattcaattttatcacgaaatcatgcaacttcataggtgttttcagtgttttttagtgagaaatcttgtaaatcagcaaatcaa 7372528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 7361787 - 7361605
Alignment:
Q  11 actatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcg 110  Q
    |||||| || |||||||||||||||||||| |||| |||||| || || ||||||||||||||| || ||| || ||| |||||||| |||||| |||||    
T  7361787 actatgtttctagtgtaattctttgcattttaaggcaaattaaaaatctattagaggagttgtcattggttcgatgaactttttgtaatgttttcattcg 7361688  T
Q  111 aatcattgtaattcacttttat--ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    | ||||||||| ||||||||||  ||||||||||||||||  | | |||||||| ||||||||||||| |||| |||||||||    
T  7361687 agtcattgtaactcacttttatcactaaatcatgcaactccgtagatgttttgagtgttttgtagtgaaaaattatgtaaatc 7361605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 24597135 - 24596956
Alignment:
Q  33 ttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat 132  Q
    ||||||||||||||||||||||||||||||||| ||||||||  | |||||| | | |||||| |||||||| ||  || || |||||||||| ||||||    
T  24597135 ttgcatttgaaggaaaattagaagtcaattagaagagttgtcaatggtttgatggagtttttgcattgttttgatctgagtcgttgtaattcaattttat 24597036  T
Q  133 -ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtg 212  Q
     ||||||||||||||||  | |||||||| | | |||| |||||||||||| |||||||||||||| ||| ||||||||||    
T  24597035 cctaaatcatgcaactccgtaggtgttttaagtctttt-tagtgagaaatcgtgtaaatcggcaaaacaagacatcacgtg 24596956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 193
Target Start/End: Complemental strand, 17881631 - 17881470
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||  |  ||| ||||| |||||||||| |||| |||||||||||||||||| | |||||    
T  17881631 tttgcatttgaaggcaaattagaagtcatttaaaggagttgtcaatgattttaggaactttttgtattattttcattcgaatcattgtaatttaatttta 17881532  T
Q  132 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 193  Q
    || |||||||||||||| ||| ||| |||||| | |||| ||||||||| |||||||||||||    
T  17881531 tcataaatcatgcaacttaataggtattttgagtctttt-tagtgagaagtcatgtaaatcgg 17881470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 4828759 - 4828890
Alignment:
Q  18 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 117  Q
    ||||||||||||| ||||||||||||||||||||  ||||| ||| |||||||| ||  | |||||||||| |||||||||| |||||| |||| |||||    
T  4828759 ttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggtttgaggaactttttgtattctttttaatcgattcatt 4828858  T
Q  118 gtaattcacttttat-ctaaatcatgcaactc 148  Q
    |||||| |||||||| ||||||||||||||||    
T  4828859 gtaatttacttttatcctaaatcatgcaactc 4828890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 7142164 - 7142267
Alignment:
Q  116 ttgtaattcacttttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||||||||||| || |||||||||||| || |||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  7142164 ttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaa 7142263  T
Q  215 ggat 218  Q
    ||||    
T  7142264 ggat 7142267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 4977952 - 4977761
Alignment:
Q  33 ttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat 132  Q
    |||||||| |||| |||||| |||||||||| |||||||||| || |||||| |||||||||||||| || | |||| | || |||||||||||||||||    
T  4977952 ttgcatttaaaggtaaattataagtcaattaaaggagttgtcattggtttgaagaattttttgtatttttatcattcaagtcgttgtaattcacttttat 4977853  T
Q  133 -ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
     |||||| ||||||||  || |  ||| |||  | ||| ||||||||||||||||||||   |||||||| ||||||| |||||||| ||||    
T  4977852 cctaaattatgcaacttcatagaggttgtgagcggtttatagtgagaaatcatgtaaatatacaaatcaagacatcacatgaaggatcgagg 4977761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 1255317 - 1255159
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 159  Q
    ||||||||||||||  | |||||||||||   |||||||||||| | |||| ||||||||||||| ||||||| ||||||||||||||  || |||||||    
T  1255317 ttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaaatcatgcaacttcataggtgttt 1255218  T
Q  160 tgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||| ||||||||| ||| |||| || ||||||  |||||||| ||||||| ||||||||    
T  1255217 tgagtgttttgtaatgaaaaattatttaaatcaacaaatcaaaacatcacatgaaggat 1255159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 23124943 - 23125074
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatctaaa-tcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||| | |||| || ||||||||||| |||||| ||| |||| |||||| || |||||||||| |||||| |||||||||||||||||||||    
T  23124943 ttgtattgttttcactcgagtcgttgtaattcacatttatccaaaatcatacaactctataggtgttttgagtgttttctagtgagaaatcatgtaaatc 23125042  T
Q  192 ggcaaatcaatacatcacgtgaaggattgagg 223  Q
    | | |||||| |||||| ||||||||| ||||    
T  23125043 gaccaatcaagacatcatgtgaaggatcgagg 23125074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 37144872 - 37145032
Alignment:
Q  2 atgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgt 101  Q
    |||| ||| |||||| ||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||||| ||  |||||  || |||||||||| |    
T  37144872 atgtatttaactatgtttttagtataattctttggatttgaaggcaaatttgaagtcaattagaggagttgtcattgttttgaaaaactttttgtattat 37144971  T
Q  102 ttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttg 161  Q
    ||| |||| | || |||||||  | |||||| ||||||||||||||||  | |||||||||    
T  37144972 tttcattcaagtcgttgtaatatatttttatcctaaatcatgcaactccgtaggtgttttg 37145032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 3269098 - 3268912
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||| |||| | ||| || | |||||||||||||| || ||||||| ||  ||||||||||||||  || || |  ||||||||||||||||    
T  3269098 tttgcatttgaaagaaactaagaggttatttagaggagttgtcattggtttgagtaacattttgtattgttttcgtttgagttgttgtaattcactttta 3268999  T
Q  132 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    | |||||||||||||||   |  ||||||| | | |||| ||||||||||||||||||||||||||| ||| | ||||| ||||||||    
T  3268998 tcctaaatcatgcaacttcgtatgtgttttaagtctttt-tagtgagaaatcatgtaaatcggcaaaacaagatatcacatgaaggat 3268912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 29544498 - 29544688
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||  |||| ||| |  | ||||||||||||||  | ||||||||||  | |||||||||||| | |||| || |||||||||||||    
T  29544498 ttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcgagtcgttgtaattcactt 29544597  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    || || |||||  ||||| || ||  ||||||||| |||||| |||| || |||||||||||||| |||| ||| ||||||| ||||||||    
T  29544598 ttctcctaaattgtgcaattccataagtgttttgagtgttttttagtaaggaatcatgtaaatcgacaaaccaagacatcacatgaaggat 29544688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 9755762 - 9755962
Alignment:
Q  12 ctatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcga 111  Q
    ||||| ||||||| || ||  ||||||||||||| |||||| ||||||||||||||| |||||  | ||||||||||  ||||||||| |||| | ||||    
T  9755762 ctatgtttttagtatattttcttgcatttgaaggcaaattataagtcaattagaggaattgtcactagtttgaggaacgttttgtatttttttcactcga 9755861  T
Q  112 atcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgt 211  Q
     || |||||||| ||||||      ||||||||  |  || |||||||| |  ||||| ||||||||||||||| |||||| |||||| | |||||| ||    
T  9755862 gtcgttgtaatttactttt------atcatgcattttcataggtgtttttagcgttttctagtgagaaatcatgcaaatcgacaaatctagacatcatgt 9755955  T
Q  212 gaaggat 218  Q
    |||||||    
T  9755956 gaaggat 9755962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 9800579 - 9800758
Alignment:
Q  33 ttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat 132  Q
    |||||||||||||||||||| ||||||||||||||| |||||  | ||||||||||  ||||||||| |||| | |||| || |||||||| ||||||      
T  9800579 ttgcatttgaaggaaaattataagtcaattagaggaattgtcactagtttgaggaacgttttgtatttttttcactcgagtcgttgtaatttactttt-- 9800676  T
Q  133 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
        ||||||||  |  || |||||||| |  ||||| ||||||||||||||| ||||||  ||||| | |||||| |||||||||    
T  9800677 ----atcatgcattttcataggtgtttttagcgttttctagtgagaaatcatgcaaatcgagaaatctagacatcatgtgaaggat 9800758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 18496544 - 18496678
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||||||||||||||||||  ||  |  | |||||| |||||||  |||||||||||| | |||| |||||||| |||||||||||||||||||| ||    
T  18496544 ttctttgcatttgaaggaaaacaagttgcaatttagagaagttgtcaattgtttgaggaactatttgaattgttttcattcgaatcattgtaattcattt 18496643  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttga 162  Q
    |||| ||||||||||| |||  || ||||||||||    
T  18496644 ttatcctaaatcatgcgacttcataggtgttttga 18496678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 5312858 - 5312732
Alignment:
Q  92 tttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 190  Q
    ||||||||||||| ||| || || |||||||||||||||||| || | |||||||||| || |||||||||| | |||| |||||| |||||||||||||    
T  5312858 tttgtattgttttcatttgagtcgttgtaattcacttttatcttatagcatgcaactccataggtgttttgagtctttt-tagtgataaatcatgtaaat 5312760  T
Q  191 cggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||   | |||||| |||||||||    
T  5312759 cggcaaaaataaacatcaagtgaaggat 5312732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 7815389 - 7815492
Alignment:
Q  116 ttgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||| |||||| |||||||||||||||  || |||||||||| |||||||||||||  |||||||||||||  ||||| || |||||| |||||    
T  7815389 ttgtaattcagttttattctaaatcatgcaacttcataggtgttttgagtgttttgtagtgatgaatcatgtaaatcaacaaataaagacatcatgtgaa 7815488  T
Q  215 ggat 218  Q
    ||||    
T  7815489 ggat 7815492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 9761464 - 9761361
Alignment:
Q  116 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||||||||||| || || |||||| || || |||||||||| | |||  |||||| ||||||||||||||| |||||||| ||||||||||||    
T  9761464 ttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatcgacaaatcaagacatcacgtgaa 9761365  T
Q  215 ggat 218  Q
    ||||    
T  9761364 ggat 9761361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 10292797 - 10292923
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    ||||||| |||| | |||| || |||||||||| ||||||| || |||||||||| | || ||||||| || | |||||||||||| |||||||||||||    
T  10292797 ttgtatttttttcaatcgagtcgttgtaattcagttttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatc 10292896  T
Q  192 ggcaaatcaatacatcacgtgaaggat 218  Q
      |||||||| |||||| |||||||||    
T  10292897 atcaaatcaagacatcatgtgaaggat 10292923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 22067939 - 22067748
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||  |||| ||| |  | ||| ||||||||||  | ||||||||||  |  ||||||||||| | |||| ||||||||||||| |||||    
T  22067939 tttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacataatgtattgttttcactcgagtcattgtaattcaatttta 22067840  T
Q  132 t-ctaaatcatgcaactcaattgg--tgttttgaatgttttgtagtgagaaatc--atgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    | ||| |||||||||||| || ||  | |||||| |||||||||||||| ||||  |||||||||  |||||||| |||||| |||||||||    
T  22067839 tcctagatcatgcaactccataggtattttttgagtgttttgtagtgaggaatcatatgtaaatcatcaaatcaagacatcatgtgaaggat 22067748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 8309103 - 8308981
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||| ||| || ||||||| ||| | ||||||| ||||||||||||||| ||   |||||||| | |||| |||| ||||||||||||||||    
T  8309103 ttgtattgttttcatttgagtcattgtgatttagttttatcctaaatcatgcaactccatacatgttttgagtctttt-tagtaagaaatcatgtaaatc 8309005  T
Q  192 ggcaaatcaatacatcacgtgaag 215  Q
     ||||| ||| |||||||||||||    
T  8309004 agcaaaacaagacatcacgtgaag 8308981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 9801923 - 9801820
Alignment:
Q  116 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||||||||||| || || |||||| || || |||||||||| | |||  |||||| ||||||||||||||| |||||||| |||||| |||||    
T  9801923 ttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatcgacaaatcaaaacatcatgtgaa 9801824  T
Q  215 ggat 218  Q
    ||||    
T  9801823 ggat 9801820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 1074463 - 1074621
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 159  Q
    ||||||||||||||  | ||||||||||    ||||||| |||| |||||| |||||||||||  |||||||| ||||| || |||||| ||  ||||||    
T  1074463 ttagaggagttgtcaatggtttgaggaaccaattgtattattttcattcgattcattgtaatttgcttttatcctaaattatacaactccataagtgttt 1074562  T
Q  160 tgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||  | |||| |||||||||||||||||||| || ||| ||| |||||| || ||||||    
T  1074563 tgtgtcttttttagtgagaaatcatgtaaattggaaaagcaagacatcaagtaaaggat 1074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 20461746 - 20461594
Alignment:
Q  66 ggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaat 164  Q
    |||||||||  | ||||||||||   ||||||||||||| |||||| || |||||| ||| ||| ||| ||||||| |||||   || ||||||| || |    
T  20461746 ggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaactcaatttcatcctaaatcacgcaacatgataggtgtttcgagt 20461647  T
Q  165 gttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
     |||| |||||||||||||||||||||||||||  || |||||| |||||||||    
T  20461646 ctttt-tagtgagaaatcatgtaaatcggcaaaataagacatcaagtgaaggat 20461594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 8606051 - 8606140
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaa 121  Q
    ||||| ||| |||||||||||||| ||||||||||||||| ||  | |||||||||| |||| | |||||||| |||||| || ||||||    
T  8606051 tttgcgtttaaaggaaaattagaaatcaattagaggagttttcaatggtttgaggaacttttggcattgttttcattcgagtcgttgtaa 8606140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 20470916 - 20470767
Alignment:
Q  59 aattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgt 157  Q
    ||||||||||||||||  | ||||||||||  | || ||||||||| | |  | || |||||||||||||| | | ||||||||||| ||  || | |||    
T  20470916 aattagaggagttgtcaatggtttgaggaacatattatattgttttcacttaagtcgttgtaattcactttcagcctaaatcatgcatctgcatagctgt 20470817  T
Q  158 tttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatc 207  Q
    ||||| |||||| |||||| ||| ||||||||||| |||||||| |||||    
T  20470816 tttgagtgttttatagtgataaagcatgtaaatcgacaaatcaagacatc 20470767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 21471884 - 21471965
Alignment:
Q  137 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||| || || |||||||||| |||||||||||||| |||||||||||||   ||||||  ||||||||||| ||||    
T  21471884 atcatgcaattccataggtgttttgagtgttttgtagtgaggaatcatgtaaatcaataaatcatgacatcacgtgagggat 21471965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 193
Target Start/End: Complemental strand, 12358864 - 12358733
Alignment:
Q  62 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgtttt 160  Q
    |||||||||||||   |||||||| ||| ||||||||| || | ||| || || |||||||||| |||||| ||||||||| |||||  || ||||||||    
T  12358864 tagaggagttgtccaatgtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgtttt 12358765  T
Q  161 gaatgttttgtagtgagaaatcatgtaaatcgg 193  Q
    || | |||| ||||||||||| || ||||||||    
T  12358764 gagtctttt-tagtgagaaataatataaatcgg 12358733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 2630482 - 2630425
Alignment:
Q  158 tttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    ||||| |||||||||||||| |||||||||||||  |||||||| |||||| ||||||    
T  2630482 tttgagtgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaag 2630425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 16536710 - 16536668
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagtt 71  Q
    ||||||||||||||||  ||||||||||||| |||||||||||    
T  16536710 ttctttgcatttgaagacaaattagaagtcatttagaggagtt 16536668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 16577408 - 16577366
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagtt 71  Q
    ||||||||||||||||  ||||||||||||| |||||||||||    
T  16577408 ttctttgcatttgaagacaaattagaagtcatttagaggagtt 16577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 16588254 - 16588296
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagtt 71  Q
    ||||||||||||||||  ||||||||||||| |||||||||||    
T  16588254 ttctttgcatttgaagacaaattagaagtcatttagaggagtt 16588296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 16628952 - 16628994
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagtt 71  Q
    ||||||||||||||||  ||||||||||||| |||||||||||    
T  16628952 ttctttgcatttgaagacaaattagaagtcatttagaggagtt 16628994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 3487380 - 3487312
Alignment:
Q  149 aattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||||||| | |||| || ||||||||||||| |||||||||| ||| ||||||  ||||||||    
T  3487380 aattggtgttttgagtctttt-taatgagaaatcatgtgaatcggcaaaacaagacatcaaatgaaggat 3487312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 7494812 - 7494865
Alignment:
Q  165 gttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||| |||||||||||||| |  ||||||| ||||||| ||||||||    
T  7494812 gttttgtagtgggaaatcatgtaaattgaaaaatcaagacatcacatgaaggat 7494865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 21545885 - 21545816
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaact 147  Q
    ||||||||||  | |||||||||||| | |||| || |||||| |||||||||| |||||||||||||||    
T  21545885 gtttgaggaacatattgtattgttttcactcgagtcgttgtaactcacttttatcctaaatcatgcaact 21545816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 22532776 - 22532586
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||| ||||||| |||||| | | ||||  |||||||||| ||  | ||||||||||  |||| ||||||||| ||| || ||  | |||||||||||||    
T  22532776 tttgtatttgaaagaaaataaaaggtcatgtagaggagttatccatggtttgaggaacattttctattgttttcattggattcgctataattcactttta 22532677  T
Q  132 tct---aaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    ||    |||||||| ||||  ||  ||||| ||| | |||| ||||||||||||||||||||||||||| ||| ||||||| ||| |||| ||||    
T  22532676 tcctaaaaatcatggaacttgat--gtgttatgagtatttt-tagtgagaaatcatgtaaatcggcaaa-caagacatcacatgatggatcgagg 22532586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 24584871 - 24584698
Alignment:
Q  18 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 117  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||| |||||    
T  24584871 ttttagtataattctttgtatttgaaggcaaattagaagtcaattagaggagttgtcatcggtttgaggaattttttgtattgttttcattcgagtcatt 24584772  T
Q  118 gtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 190  Q
    |||||||| ||||||| ||||||||||||||| || ||| |||||| | ||||||||||||||||| |||||||    
T  24584771 gtaattcatttttatcataaatcatgcaactctataggtattttgagttttttgtagtgagaaatcttgtaaat 24584698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 10866967 - 10867156
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||| ||| ||||| |||| ||| |||| |||||| |||||||  | ||||||||||| |||||||||||||| ||| || || |||||||||| ||    
T  10866967 ttctttgaattcgaaggcaaataagaggtcatttagagtagttgtcaatggtttgaggaatattttgtattgttttcatttgagtcgttgtaattcagtt 10867066  T
Q  129 ttatct-aaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||| |||||||||||||| |  |||| ||||||| |||| |||||||||||||||||| |||||||| ||| | | ||||||||||||    
T  10867067 ttatctcaaatcatgcaactccaaaggtgctttgaatctttt-tagtgagaaatcatgtaagtcggcaaaacaagataccacgtgaaggat 10867156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 14424940 - 14424759
Alignment:
Q  37 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 135  Q
    ||||||||||||||||||||| | |||||| ||| |||  | |||||||||| ||||| ||| ||||| |||||| || |||||||||| |||||| |||    
T  14424940 atttgaaggaaaattagaagtaatttagagaagtagtcaatggtttgaggaactttttatatggttttcattcgagtcgttgtaattcagttttatccta 14424841  T
Q  136 aatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||||| || |||||||| |   |||| ||||||||||||||||||||||||||| ||| ||| || | |||||||    
T  14424840 aatcatgcaactccataggtgtttt-aggtttttttagtgagaaatcatgtaaatcggcaaaacaagacaacaagggaaggat 14424759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 30851227 - 30851046
Alignment:
Q  37 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 135  Q
    ||||||||||||||||||||||| ||| | ||||||| | | |||||||||| ||||| |||| |||| ||||||||| ||||||||||  ||||| |||    
T  30851227 atttgaaggaaaattagaagtcatttataagagttgttgatggtttgaggaagtttttatattattttcattcgaatcgttgtaattcagatttatccta 30851128  T
Q  136 aatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||||||||| ||||||||| ||  | | |||||||||||| ||||||||  |||| ||| |||||  |||||||||    
T  30851127 aatcatgcaactcaataggtgttttggat-ctatctagtgagaaatcgtgtaaatcatcaaagcaagacatctagtgaaggat 30851046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 32239296 - 32239456
Alignment:
Q  59 aattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatct-aaatcatgcaactcaattggtgt 157  Q
    ||||||||||||||||  | ||||||| ||  | |||||||||||||| | || || ||| ||||||||||||||| |||||||||||||| ||   |||    
T  32239296 aattagaggagttgtcaatggtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttttatcttaaatcatgcaactccataaatgt 32239395  T
Q  158 tttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||| ||||||||||||||||||| ||||||| | |||||| | ||||||| ||||||||    
T  32239396 tttgagtgttttgtagtgagaaatcgtgtaaattgacaaatcgagacatcacatgaaggat 32239456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 29291750 - 29291935
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||| |||||||||| |||||||||||||  |||||||||| ||  | |||||||||||||||| |||| |||| ||| || || ||||||| || ||    
T  29291750 ttcttttcatttgaaggcaaattagaagtcatatagaggagttatcaatggtttgaggaattttttatatt-ttttcatttgagtcgttgtaatgcagtt 29291848  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    |||| |||||||||||||||  ||  || |||||| | |||| |||| |||||||||||||||||||||| ||| | |||||||||||    
T  29291849 ttatcctaaatcatgcaactttataagtattttgagtctttt-tagtaagaaatcatgtaaatcggcaaaacaagatatcacgtgaag 29291935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 11437371 - 11437583
Alignment:
Q  2 atgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgt 101  Q
    ||||||||  |||||||||||||    ||||||| |||| |||| ||||| ||||||||||||||||||| ||  | ||| || ||| ||||||| ||||    
T  11437371 atgtttttacctatgcttttagttattttctttgtatttaaaggcaaattggaagtcaattagaggagttttcaatggttcgaagaaatttttgtgttgt 11437470  T
Q  102 ttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatca 200  Q
    ||| |||||| || || ||||||| ||| ||| ||  ||||||||||| ||  || |||||| | |||| ||||||||||||||||||||||||||| ||    
T  11437471 tttcattcgagtcgttataattcagtttcatcataggtcatgcaactccatatgtattttgagtctttt-tagtgagaaatcatgtaaatcggcaaaaca 11437569  T
Q  201 atacatcacgtgaa 214  Q
    | |||||| |||||    
T  11437570 agacatcaagtgaa 11437583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 5153740 - 5153931
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||| ||||||||  ||||||||||| | ||||||||||||||  |  ||| || ||   |||||||| |||| |||||| ||||||||||||| |||||    
T  5153740 tttgtatttgaagataaattagaagttatttagaggagttgtcaatgattttagaaaaaatttgtattattttcattcgagtcattgtaattcagtttta 5153839  T
Q  132 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    || |||||||| |||||| || |||||||||| | |||| |||| ||||||||||||||| |||||| ||| |||| | ||||||||| ||||    
T  5153840 tcttaaatcattcaactcgataggtgttttgagtctttt-tagtaagaaatcatgtaaataggcaaaacaagacataaagtgaaggatcgagg 5153931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 16052307 - 16052223
Alignment:
Q  134 taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||  |||||||| ||||||| ||||||||    
T  16052307 taaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatctaaatcaacaaatcaagacatcacatgaaggat 16052223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 30543745 - 30543934
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||  |||||| |||| ||||||||||||| ||   ||||||| |||  |||||||||||||| ||| || |  ||||||||||||||||    
T  30543745 tttgcatttgaagacaaattaaaagttaattagaggagttctc-aatgtttgatgaa-cttttgtattgttttcatttgagttgttgtaattcactttta 30543842  T
Q  132 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    | ||||||||||||| |  || |||||||||| | |||| | ||||||||||||||||||||| ||| ||| | ||||| |||||||||||||    
T  30543843 tcctaaatcatgcaattatataggtgttttgagtctttt-tggtgagaaatcatgtaaatcggtaaaacaagatatcacatgaaggattgagg 30543934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 35135558 - 35135362
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||| ||||||||| |||| | |||||| | | ||||||||||    |||| ||| |  |||||||||||||||| |||| ||||||||||||| ||    
T  35135558 ttctttgtatttgaaggtaaataaaaagtcattcaaaggagttgtcaaaggttttaggtacattttgtattgtttttactcgagtcattgtaattcattt 35135459  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagt-gagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    |||| |||||||||||||||| |   ||||||||| | |||| |  | ||||||||| |||||||| |||| ||| |||||||||| ||||||||||    
T  35135458 ttatcctaaatcatgcaactccacatgtgttttgagtctttttttttggagaaatcaggtaaatcgacaaaacaagacatcacgtggaggattgagg 35135362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 27097905 - 27097743
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 159  Q
    |||||||| |||||  | ||||||||||  | ||| |||||||| ||| || || |||||||||| ||||||| ||||||||||||||  || |||||||    
T  27097905 ttagaggaattgtcaatggtttgaggaacatgttgcattgttttcatttgagtcgttgtaattcagttttatcataaatcatgcaacttcataggtgttt 27097806  T
Q  160 tgaatgttttgt-agtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattga 221  Q
      | | |||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  27097805 aaagtctttttttagtgagaaatcatgtaaatcggcaaaacaagacatcacgtgatggattga 27097743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 28902132 - 28902258
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||| |||||| || |||||||||||||||||| || | || |||| || ||  ||||||| | ||||| ||||||||||||||||||||||    
T  28902132 ttgtattgttttcattcgagtcgttgtaattcacttttatcctataccacgcaaatccataagtgtttttagtgtttagtagtgagaaatcatgtaaatc 28902231  T
Q  192 ggcaaatcaatacatcacgtgaaggat 218  Q
      |||||| | ||||||||||||||||    
T  28902232 aacaaatcgagacatcacgtgaaggat 28902258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 13583637 - 13583461
Alignment:
Q  37 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 135  Q
    |||| |||| |||||||||||||||||||||||||||   | || |||||||  |||| |||||||||||||||| || |||||||||| |||||| |||    
T  13583637 attttaaggtaaattagaagtcaattagaggagttgttaatagtctgaggaaccttttctattgtttttattcgagtctttgtaattcagttttatccta 13583538  T
Q  136 aatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    ||||||       | ||||   ||||| | |||| |||||||||||||||||||||| |||| ||| |||||| ||||||||| ||||    
T  13583537 aatcat-------agttgg---tttgagtctttt-tagtgagaaatcatgtaaatcgacaaaacaagacatcaagtgaaggatcgagg 13583461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 191
Target Start/End: Original strand, 31436463 - 31436620
Alignment:
Q  34 tgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat- 132  Q
    |||||||||||| |||| ||| || | ||||||||||||||  |  ||||||||||    | |||| |||| |||||| ||| ||||||| | ||||||     
T  31436463 tgcatttgaaggcaaataagatgtaatttagaggagttgtcaatgatttgaggaataaactatatttttttcattcgagtcagtgtaatttagttttatc 31436562  T
Q  133 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||||||  || |||||||||||| |||| |||||||||||||||||||||    
T  31436563 ctaaatcatgcaactacataggtgttttgaatctttt-tagtgagaaatcatgtaaatc 31436620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 12956468 - 12956601
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||  |||| ||| |  | ||||||||||||||  | ||||||||||  | |||||||||||| | |||| |||| |||||||||||    
T  12956468 ttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgttttcactcgagtcatcgtaattcactt 12956567  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttg 161  Q
    |||| |||||||||| ||||| || |||||||||    
T  12956568 ttatcctaaatcatgtaactctataggtgttttg 12956601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 28074554 - 28074681
Alignment:
Q  90 tttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaa 188  Q
    ||||||||||||||| ||| || || ||| |||||||||||||| ||||||||||||||| || ||||||| || | |||| ||||||||||||||||||    
T  28074554 tttttgtattgttttcatt-gagtcgttgcaattcacttttatcctaaatcatgcaactccataggtgtttcgagtctttt-tagtgagaaatcatgtaa 28074651  T
Q  189 atcggcaaatcaatacatcacgtgaaggat 218  Q
    ||  ||||| ||| ||||||  ||||||||    
T  28074652 atatgcaaaacaagacatcaaatgaaggat 28074681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 16054305 - 16054463
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 159  Q
    ||||||||||||||  |  ||| |||||  |||||||||||||| | |||| |  |||||||||| ||||||| || |||||  ||||| || | |||||    
T  16054305 ttagaggagttgtcaatgatttaaggaacattttgtattgttttcactcgagttgttgtaattcatttttatcctagatcataaaactccatagatgttt 16054404  T
Q  160 tgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||| |||||||||||||| |||||||||||||   || |||| |||||| |||||||||    
T  16054405 tgattgttttgtagtgaggaatcatgtaaatcattaattcaagacatcatgtgaaggat 16054463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 26882496 - 26882566
Alignment:
Q  137 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatc 207  Q
    |||||||||||| || |||||||||| |||||||||||||| |||||||||||||  |||||||| |||||    
T  26882496 atcatgcaactccataggtgttttgattgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatc 26882566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 14977211 - 14977122
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgttttt-attcgaatcattgtaattcacttttat-ctaaatcatgcaactc 148  Q
    ||||||||||||||  | ||||||||||  | ||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||    
T  14977211 ttagaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcattgtaattcacttttatcctaaatcatgcaactc 14977122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 22894587 - 22894477
Alignment:
Q  108 tcgaatcattgtaattcacttttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacat 206  Q
    |||||||||||| |||||||||||||| | ||||| |||||| || ||| |||| | |||| | ||||||||||||||||||||| | ||||||| | ||    
T  22894587 tcgaatcattgtgattcacttttatcttagatcattcaactccataggtatttttagtgttctatagtgagaaatcatgtaaatc-gaaaatcaagatat 22894489  T
Q  207 cacgtgaaggat 218  Q
    ||| ||||||||    
T  22894488 cacatgaaggat 22894477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 29047391 - 29047265
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||| | |||| ||| ||||||||| ||||||  |  |||||||||||| ||   |||||||| |||||||||||||| |||||||||||||    
T  29047391 ttgtattgttttcactcgagtcactgtaattcaattttataatggatcatgcaactccatatatgttttgagtgttttgtagtgaggaatcatgtaaatc 29047292  T
Q  192 ggcaaatcaatacatcacgtgaaggat 218  Q
       || |||| |||||| |||||||||    
T  29047291 ataaattcaagacatcatgtgaaggat 29047265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 5570226 - 5570093
Alignment:
Q  80 tttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgaga 178  Q
    |||||||||  | |||||||||||| | |||| |  |||||||||||||||||| || |||||||||||   | |||||||||| |||||| ||||||      
T  5570226 tttgaggaacatattgtattgttttcactcgagttgttgtaattcacttttatcctatatcatgcaacttcgtaggtgttttgagtgttttctagtgatg 5570127  T
Q  179 aatcatgtaaatcggcaaatcaatacatcacgtg 212  Q
     || |||||||||| |||||| | ||||||||||    
T  5570126 cattatgtaaatcgacaaatcgagacatcacgtg 5570093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 28260320 - 28260236
Alignment:
Q  133 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||  |||| || |||||||||| | |||| ||||||||||||||||||||| ||||| ||| |||||||||| |||||    
T  28260320 ctaaatcatgagactccataggtgttttgagtctttt-tagtgagaaatcatgtaaatcagcaaaacaagacatcacgtggaggat 28260236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 6888322 - 6888145
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||| ||||||||| |||| | | |||| ||||| ||||||||  | ||| ||| ||  ||||||||| |||| ||| || ||||||||||||| || ||    
T  6888322 tttgtatttgaaggtaaataaaaggtcatttagacgagttgtcaatggttagagaaacattttgtatt-ttttcatttgagtcattgtaattcagttcta 6888224  T
Q  132 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtg 212  Q
    || ||||||||||||||| |  |||||||||| |  ||| |||||||||||||||||||||  |||| |||  |||||||||    
T  6888223 tcctaaatcatgcaactcca--ggtgttttgagtcattt-tagtgagaaatcatgtaaatcaacaaaacaaaccatcacgtg 6888145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 13530242 - 13530077
Alignment:
Q  28 attctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcact 127  Q
    |||||||||| ||||||  |||| ||| |||| ||||||||| ||||| | ||||||||||  |||||||||||||| |||| | || ||| |||||| |    
T  13530242 attctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgttttcattcaagtctttgaaattcaat 13530143  T
Q  128 tt-tatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 193  Q
    || | ||  ||||||||||||| ||  || |||| ||  |||| || ||| ||||||||||||||||    
T  13530142 ttatttcctaatcatgcaactccatatgtatttt-aagcttttttattgaaaaatcatgtaaatcgg 13530077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 13619781 - 13619616
Alignment:
Q  28 attctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcact 127  Q
    |||||||||| ||||||  |||| ||| |||| ||||||||| ||||| | ||||||||||  |||||||||||||| |||| | || ||| |||||| |    
T  13619781 attctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgttttcattcaagtctttgaaattcaat 13619682  T
Q  128 tt-tatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 193  Q
    || | ||  ||||||||||||| ||  || |||| ||  |||| || ||| ||||||||||||||||    
T  13619681 ttatttcctaatcatgcaactccatatgtatttt-aagcttttttattgaaaaatcatgtaaatcgg 13619616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 13081986 - 13081880
Alignment:
Q  116 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaat---catgtaaatcggcaaatcaatacatcacgt 211  Q
    |||||||||| || |||| || |||||||||||  || ||||||||||  ||||||||||||| |||   ||||||||||  ||||| ||||||||| ||    
T  13081986 ttgtaattcagttgtatcctagatcatgcaacttcataggtgttttgagagttttgtagtgaggaatattcatgtaaatcatcaaattaatacatcatgt 13081887  T
Q  212 gaaggat 218  Q
    |||||||    
T  13081886 gaaggat 13081880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 12774917 - 12774795
Alignment:
Q  91 ttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    |||| |||| |||||||| || ||||||||||| | ||||||| ||||||||||||  | || |||||||| | |  ||| |||| |||||| |||||||    
T  12774917 ttttatattatttttatttgagtcattgtaatttagttttatcctaaatcatgcaataccataggtgtttttagtactttttagtaagaaataatgtaaa 12774818  T
Q  190 tcggcaaatcaatacatcacgtg 212  Q
    |||| ||| |||  |||||||||    
T  12774817 tcggaaaaacaagtcatcacgtg 12774795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 24696685 - 24696750
Alignment:
Q  153 ggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||| | |||||| |||| ||||||||||||||||  |||||||| ||||||| | ||||||    
T  24696685 ggtgtttttagtgttttatagtaagaaatcatgtaaatcaacaaatcaagacatcacataaaggat 24696750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 28859270 - 28859185
Alignment:
Q  133 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||| ||||| | ||  |||||||||  |||||||||| ||||||||||||||| | |||| | | ||||||| ||||||||    
T  28859270 ctaaatcacgcaacaccatatgtgttttgagggttttgtagtaagaaatcatgtaaatggacaaacctaaacatcacatgaaggat 28859185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 12358691 - 12358766
Alignment:
Q  139 catgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    |||||||||| || |||||||||| | |||| ||||||||||| ||||||||| | ||| ||| |||||| ||||||    
T  12358691 catgcaactctataggtgttttgagtctttt-tagtgagaaattatgtaaatctgaaaaacaagacatcaagtgaag 12358766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 41505673 - 41505573
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||  |||| ||| |||| ||||  ||||| |    |||||||||||| ||||||||| |||| |||||| |  |||||||||||||    
T  41505673 ttctttgcatttgaagacaaataagaggtcatttaggagagttataccgtgtttgaggaatattttgtattattttcattcgagttgttgtaattcactt 41505574  T
Q  129 t 129  Q
    |    
T  41505573 t 41505573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 19601766 - 19601972
Alignment:
Q  18 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 117  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| || |||||||||| ||||| |||| |||| |||| |||  ||    
T  19601766 ttttagtgtaattctttgcatttaaaggcaaattaaaagtcaattagaggagttgtcattggtttgaggaactttttctatttttttcattcaaattgtt 19601865  T
Q  118 gtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaagg 216  Q
    ||||||||||||||| |||||||||||||||| || ||| |||| |  ||||| |||||||||||||||||||||  |||||||| |||||||||||| |    
T  19601866 gtaattcacttttatcctaaatcatgcaactccataggtatttttagcgttttctagtgagaaatcatgtaaatcaacaaatcaagacatcacgtgaaag 19601965  T
Q  217 attgagg 223  Q
    || ||||    
T  19601966 atcgagg 19601972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 10576432 - 10576626
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||| ||||||||||||||| |||  ||| |||||| |||||||  | |||||| |||  |||||||||||||| |||||| ||||||||||||||||    
T  10576432 ttctttccatttgaaggaaaataagagatcatttagagaagttgtccatggtttgaagaacattttgtattgttttcattcgagtcattgtaattcactt 10576531  T
Q  129 tta-tctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    ||| ||||||| || |||||  || ||||||||| ||  ||| ||||||||||| ||||||||||| ||| ||| |||||| ||||||||| ||||    
T  10576532 ttattctaaattatacaacttcataggtgttttg-attctttctagtgagaaattatgtaaatcggaaaaacaagacatcatgtgaaggatcgagg 10576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 29437448 - 29437644
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttg--tattgtttttattcgaatcattgtaattcac 126  Q
    ||||||| ||||||||| ||||||||| ||||||||| ||||||||  | |||||||||||||||||  | || |||| |||||| |  | ||||||||     
T  29437448 ttctttgtatttgaaggcaaattagaactcaattagatgagttgtcaatagtttgaggaattttttgattttttttttcattcgagtattcgtaattcag 29437547  T
Q  127 ttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    |||||| |||||||||||||||  || | |||||||| | |||| || |||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  29437548 ttttatcctaaatcatgcaacttcatagctgttttgagtctttt-taatgagaaatcatgtaaatcggcaagacaagacatcacgtgaaggatcgagg 29437644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 34864395 - 34864241
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 159  Q
    ||||||||||||||  | ||||||||||  | |  ||||||||| | |||  ||||||||||||||||||||| ||||| ||| ||||| ||  ||||||    
T  34864395 ttagaggagttgtcaatggtttgaggaacgtatcatattgttttcactcg--tcattgtaattcacttttatcctaaattatgaaactccat--gtgttt 34864300  T
Q  160 tgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  34864299 tgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggat 34864241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 217
Target Start/End: Original strand, 23353605 - 23353789
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||  | ||||||||||| |||||| | || ||  | |||| ||||| ||||||||||||||| |||||| || |||||||||| |||||    
T  23353605 tttgcatttgaagtcagattagaagtcatttagagtaattatcaatggtttaaggaactttttgtattgttttcattcgagtcgttgtaattcaatttta 23353704  T
Q  132 tctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaagga 217  Q
    | |||||| ||||  |  ||  ||||||||| | |||| ||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  23353705 tataaatcgtgcacattcatgagtgttttgagtctttt-tagtgagaaatcatgtaaatcggcaaaacaagacatcacatgaagga 23353789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 15192269 - 15192372
Alignment:
Q  116 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||||||||||| || ||| |||| ||| || |||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  15192269 ttgtaattcacttttatcctagatcgtgcagctccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaaccaagacatcacgtgaa 15192368  T
Q  215 ggat 218  Q
    ||||    
T  15192369 ggat 15192372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 9783119 - 9782929
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||| |||||||||| |||| ||| |  | ||||||||||||||  | ||||||||||  | |||||||||||| | || | ||||||||||||| ||    
T  9783119 ttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcaattcattgtaattcagtt 9783020  T
Q  129 ttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||| | | |||||||||||| || ||| ||| || |||||||||||||| |||||||||||||  |||||||| |||||| ||| |||||    
T  9783019 ttattttagatcatgcaactccataggtttttagagtgttttgtagtgaggaatcatgtaaatcaacaaatcaagacatcatgtggaggat 9782929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 17026745 - 17026642
Alignment:
Q  116 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||||||||||| || |||||||||||| || |||||||||| ||||||||||| | ||||||||||||||| ||||| || ||||||| ||||    
T  17026745 ttgtaattcacttttatcctagatcatgcaactccataggtgttttgagtgttttgtagtcataaatcatgtaaatcgacaaattaagacatcacatgaa 17026646  T
Q  215 ggat 218  Q
    ||||    
T  17026645 ggat 17026642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 21077212 - 21077401
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||  | ||||||| ||  ||||||||| ||||||||||| || ||||| |||| ||    
T  21077212 ttctttgcatttgaaggcaaattagaagtcatttagaggagttgtcaatggtttgagaaaccttttgtattatttttattcgagtcgttgtagttcaatt 21077311  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||  |||||||  || || || ||||||||   | |||| |||||| ||||||||||||| |||||| ||| ||| || ||| |||||    
T  21077312 ttatcacaaatcatcaaattccataggtgtttttggtctttt-tagtgaaaaatcatgtaaattggcaaaacaagacaccaagtggaggat 21077401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 33519019 - 33519203
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||| |||| ||| || | |||| |||||||||| | ||||||||||| |||||||| ||||| ||||          |||||| ||    
T  33519019 ttctttgcatttgaaggcaaataagaggttatttaggggagttgtcgatagtttgaggaatattttgtatcgttttcattc----------aattcagtt 33519108  T
Q  129 ttatct-aaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    |||||| |||||||||||||   | |||||||||| | |||| |||||||||||||||| |||||||||||||| ||||| | ||||| |||||||    
T  33519109 ttatcttaaatcatgcaacttcgtaggtgttttgagtctttt-tagtgagaaatcatgtgaatcggcaaatcaaaacatctcttgaagaattgagg 33519203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 21167711 - 21167872
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||  |  ||| |||||  |||||||||||||| |||||| |  |||||||| |||||||    
T  21167711 tttgcatttgaaggaaaataagacgtcatttagaggagttgtccatgttttaaggaacattttgtattgttttcattcgagttgttgtaatttactttta 21167810  T
Q  132 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 193  Q
    | |||||  ||| ||||  || ||||||||||   |||| |||||||||||||||||||||||    
T  21167811 tcctaaaatatgtaacttcataggtgttttgagactttt-tagtgagaaatcatgtaaatcgg 21167872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 212
Target Start/End: Original strand, 27302790 - 27302940
Alignment:
Q  62 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgtttt 160  Q
    ||||| |||||||  | ||||||||||  |||||||||||||| | |||| ||||||||||||| || ||| ||| |||||||||||  || ||||||||    
T  27302790 tagagaagttgtcaatggtttgaggaacattttgtattgttttcactcgagtcattgtaattcaattatatactagatcatgcaacttcat-ggtgtttt 27302888  T
Q  161 gaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtg 212  Q
     | | |||||||||||  |||||||||||||| ||||| || ||||||||||    
T  27302889 tagtattttgtagtgatgaatcatgtaaatcgacaaattaagacatcacgtg 27302940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 9288189 - 9288378
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||||||| | ||||||||||||  || | | ||||||||| ||  | ||||||||||    |||||||||||| ||| || ||||| ||||||| ||    
T  9288189 ttctttgcatataaaggaaaattagttgtaattaagaggagttttcaatggtttgaggaacaaattgtattgttttcatttgagtcattataattcattt 9288288  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||| ||||||||| | ||| ||  || |||| | | |||| ||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  9288289 ttatcataaatcatgtacctccatatgtttttttagtctttt-tagtgagaaatcatgtaaatcggcaaaacaagacatcaagtgaaggat 9288378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 13064466 - 13064594
Alignment:
Q  90 tttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaa 188  Q
    ||||| |||||||||||||| | ||||  ||| ||||||||||  |||||||||||| |  || |||||||||| |  ||| |||| |||||||||||||    
T  13064466 tttttttattgtttttattcaattcataataaatcacttttattataaatcatgcaattttataggtgttttgagtcattt-tagtaagaaatcatgtaa 13064564  T
Q  189 atcggcaaatcaatacatcacgtgaaggat 218  Q
    || |||||||||| ||||||||||||||||    
T  13064565 attggcaaatcaagacatcacgtgaaggat 13064594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 22119625 - 22119779
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||| ||||||||||| | ||| ||||||||||  | ||||||||||    ||||| ||||||  ||||| ||||||||||| ||||    
T  22119625 ttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaacaaattgtaatgttttcgttcgagtcattgtaatttactt 22119724  T
Q  129 tta-tctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatca 183  Q
    |||  | |||||||||||||  || ||| |||||| | |||| |||||||||||||    
T  22119725 ttacccaaaatcatgcaactacataggtattttgagtctttt-tagtgagaaatca 22119779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 18898097 - 18898151
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  18898097 tgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacatgaaggat 18898151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 25315334 - 25315177
Alignment:
Q  62 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 160  Q
    |||||||||||||  |  |||||||||  | |||||||||||| | | || || |||||||| | ||||||| || |||||||||||| ||  | |||||    
T  25315334 tagaggagttgtcaatgctttgaggaacatattgtattgttttcacttgagtcgttgtaattaagttttatcctagatcatgcaactccatatgggtttt 25315235  T
Q  161 gaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    || |  ||||||||||| |||||||||||||| |||||||| ||||| | ||||||||    
T  25315234 gagtaatttgtagtgaggaatcatgtaaatcgacaaatcaagacatcgcatgaaggat 25315177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 46647175 - 46647363
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||| |||||||||||||| |||    | |||||| |||||||  | |||| | |||| |||||||||||||| |||| | ||  ||||||||||||    
T  46647175 ttctttgtatttgaaggaaaataagagaaaatttagagaagttgtcaatggtttcaagaatattttgtattgttttcattctagtcggtgtaattcactt 46647274  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||| |||||||||||||||| ||  |||  |||| |  ||| ||  |||||||||| |||||| ||||| ||| ||||||||||| ||||    
T  46647275 ttatcctaaatcatgcaactccataagtg--ttgagttatttttatcgagaaatcatataaatcagcaaaacaagacatcacgtgagggat 46647363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 31859931 - 31859842
Alignment:
Q  133 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    |||||||||||||||  || |||||||||| | |||| ||||||||||||||||||||| ||||| ||| ||| || ||||||||| ||||    
T  31859931 ctaaatcatgcaactgcataggtgttttgagtctttt-tagtgagaaatcatgtaaatcagcaaaacaagacaccaggtgaaggatcgagg 31859842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 12111336 - 12111272
Alignment:
Q  153 ggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||| |||||||||||||||| || ||||||||| ||||||||  |||||||||||||||    
T  12111336 ggtgttttgagtgttttgtagtgagaa-tcttgtaaatcgacaaatcaagtcatcacgtgaaggat 12111272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 10320291 - 10320183
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    ||||||| |||| | |||| || |||||||||||||||||| || | |||||||||| || |||||||| |   |||||||||||||||||| ||||||     
T  10320291 ttgtattcttttcactcgagtcgttgtaattcacttttatcctagaccatgcaactccataggtgttttaagctttttgtagtgagaaatcaggtaaatt 10320192  T
Q  192 ggcaaatca 200  Q
    | |||||||    
T  10320191 gacaaatca 10320183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 47024765 - 47024711
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||||||||||||||||||||||  ||||||| ||||| | ||||||||    
T  47024765 tgttttgtagtgagaaatcatgtaaatcgaaaaatcaagacatcgcatgaaggat 47024711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 26159797 - 26159925
Alignment:
Q  91 ttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    |||||||||||||| |||||| || |||||||| | |||| | |||||| || |||||  ||  ||||||||| | |||| |||||| |||||||||| |    
T  26159797 ttttgtattgttttcattcgagtcgttgtaatttagttttgtcctaaattatccaacttcatatgtgttttgagtctttt-tagtgaaaaatcatgtaga 26159895  T
Q  190 tcggcaaatcaatacatcacgtgaaggatt 219  Q
    || ||||| ||| |||||| ||||||||||    
T  26159896 tcagcaaaacaagacatcatgtgaaggatt 26159925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 5676268 - 5676368
Alignment:
Q  119 taattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaagga 217  Q
    ||||||| ||||||| |||||  |||||||| || |||||||||| | |||| ||||||  |||||||||||| |  ||||||| ||||||| |||||||    
T  5676268 taattcatttttatcctaaattgtgcaactccataggtgttttgagtattttttagtgatgaatcatgtaaattgataaatcaagacatcacatgaagga 5676367  T
Q  218 t 218  Q
    |    
T  5676368 t 5676368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 13206669 - 13206625
Alignment:
Q  171 tagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||    
T  13206669 tagtgagaaatcatgtaaatcggcaaatcagaacatcacatgaag 13206625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 24925787 - 24925903
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||| ||||||||  |||| |||||||| ||| | ||||||||  | ||||||| ||  |||||||||||||| ||| || ||  |||||||||||||||    
T  24925787 tttgtatttgaagataaataagaagtcatttaaaagagttgtcaatcgtttgagtaacattttgtattgttttcatttgagtcgctgtaattcactttta 24925886  T
Q  132 tc-taaatcatgcaact 147  Q
    || ||||||||| ||||    
T  24925887 tcataaatcatgtaact 24925903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 13275816 - 13275690
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatct-aaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||| |||||| || || ||||||||||| |||  ||||||| ||||||  | |||||||||| | |||| || ||  ||||||||||| ||    
T  13275816 ttgtattgttttcattcgagtcgttataattcactttcatcccaaatcatacaactctgtaggtgttttgagtctttt-tattgctaaatcatgtaattc 13275718  T
Q  192 ggcaaatcaatacatcacgtgaaggatt 219  Q
    |||||| ||||||| |||  ||||||||    
T  13275717 ggcaaagcaatacaccacacgaaggatt 13275690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 19217913 - 19217947
Alignment:
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtg 212  Q
    |||||||||||||||||||||||| ||||||||||    
T  19217913 aaatcatgtaaatcggcaaatcaagacatcacgtg 19217947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 12243746 - 12243691
Alignment:
Q  144 aactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatca 200  Q
    |||||||| |||||||||| |  ||| ||||||||||||||||||||||| ||||||    
T  12243746 aactcaataggtgttttgagtcattt-tagtgagaaatcatgtaaatcggtaaatca 12243691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 27918130 - 27917929
Alignment:
Q  18 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 117  Q
    ||||| |||||||||||||||||||||| ||||||||| |||| || |||||||||| || ||||||||||  ||  |||||||||| ||| || || ||    
T  27918130 ttttaatgtaattctttgcatttgaaggcaaattagaattcaactataggagttgtcattggtttgaggaacgttgggtattgttttcatttgagtcgtt 27918031  T
Q  118 gtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaagg 216  Q
    ||||||||||||||| |||||||||||||||| || |||||||||| | || | |||| ||||||||||| ||||| |||||||| ||||||  ||||||    
T  27918030 gtaattcacttttatactaaatcatgcaactccataggtgttttgactattctatagtaagaaatcatgtcaatcgacaaatcaagacatcagatgaagg 27917931  T
Q  217 at 218  Q
    ||    
T  27917930 at 27917929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 19541016 - 19541210
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||||||||||||| | |  || |||||||||   | |||||||||| ||||||||||  ||| | |||| ||||||||||||| ||    
T  19541016 ttctttgcatttgaaggaaaattagaatttatatataggagttgttaatggtttgaggaactttttgtatttatttcaatcgagtcattgtaattcagtt 19541115  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    ||||| ||||||||||||||| || |||||||||| | |||  |||||||||||||||||||||||||||  || |||||| ||||||||| ||||    
T  19541116 ttatcctaaatcatgcaactccataggtgttttgagtctttc-tagtgagaaatcatgtaaatcggcaaaataagacatcaagtgaaggatcgagg 19541210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 29647708 - 29647576
Alignment:
Q  2 atgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgt 101  Q
    ||||||||  ||||| | ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||  ||||||||| ||||| ||||||    
T  29647708 atgtttttagctatgttgttagtgtaattatttgcatttgaaggcaaattagaagtcaattagagtagttgtcattgatttgaggaactttttatattgt 29647609  T
Q  102 ttttattcgaatcattgtaattcacttttatct 134  Q
    ||| ||| || || |||||||||||||||||||    
T  29647608 tttcatttgagtcgttgtaattcacttttatct 29647576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 22510915 - 22511119
Alignment:
Q  18 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 117  Q
    ||||||||||||| |||||||||||||| |||||| |||| ||||||||||| |  | || |||| ||||| |||| ||||| |||| |||||| ||  |    
T  22510915 ttttagtgtaattttttgcatttgaaggcaaattataagtaaattagaggagcttccattggttttaggaactttt-gtatttttttcattcgagtcgct 22511013  T
Q  118 gtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaagg 216  Q
    |||||| || |||||| |||||  |||||||  || | |||||||| |||||||||||||||||||||||||||||  ||||||| |||||| ||||| |    
T  22511014 gtaatttacgtttatcctaaattgtgcaactatatag-tgttttgattgttttgtagtgagaaatcatgtaaatcgaaaaatcaagacatcaagtgaaag 22511112  T
Q  217 attgagg 223  Q
    |||||||    
T  22511113 attgagg 22511119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 17152164 - 17152322
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 159  Q
    ||||||||||||||  | ||||||||||| ||||||||| |||| |||||| || |||||||| ||||||||| ||| |||||||||||  |  ||||||    
T  17152164 ttagaggagttgtcaatggtttgaggaatattttgtattattttcattcgagtcgttgtaattaacttttatcgtaattcatgcaactctgtaagtgttt 17152263  T
Q  160 tgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||| | |||| |||| |||||||||||||||||||||| ||| |||||  |||||||||    
T  17152264 tgagttttttttagtaagaaatcatgtaaatcggcaaaacaagacatcgtgtgaaggat 17152322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 27417305 - 27417209
Alignment:
Q  123 tcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||| ||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  27417305 tcacttttatcctaaatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacatgaaggat 27417209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 22388888 - 22388704
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||  |  ||||||||| ||||| ||||||||| ||| || |||||||||| || ||    
T  22388888 ttctttgcatttgaaggcaaattagaagtcaattagaggagttgtcaataatttgaggaacttttt-tattgttttcatttgagtcattgtaatccagtt 22388790  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||| || ||||||||||||  |||    |||||| | ||||  ||||||||||||||||||| ||||||  |  |||| |||||||||||    
T  22388789 ttatcctgaatcatgcaacttcatt----ttttgagtctttt-cagtgagaaatcatgtaaattggcaaaatatgacattacgtgaaggat 22388704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 17415331 - 17415211
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||  | | |||||||| ||||||||||||||| |||||| | ||||||||| | ||    
T  17415331 ttctttacttttgaaggaaaattagaagtcatttagaggagttgtcaatgggttgaggaaatttttgtattgttttcattcgattgattgtaatttagtt 17415232  T
Q  129 ttatc-taaatcatgcaactc 148  Q
    ||||| ||||| |||||||||    
T  17415231 ttatcgtaaataatgcaactc 17415211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 24047364 - 24047550
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    ||||||||||||||||||| ||| || | |||||| | |||||  | |||| |||||  |||||||||||||| |||||| |||||||||||||||||||    
T  24047364 tttgcatttgaaggaaaataagaggttatttagagaaattgtcaatggtttaaggaacattttgtattgttttcattcgagtcattgtaattcactttta 24047463  T
Q  132 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    | |||||| ||||||||| || ||  |||||  |  ||| |||||||||||| |  ||||||||||| ||| ||||| | ||||||||    
T  24047464 tcctaaattatgcaactccataggcattttgggtcattt-tagtgagaaatcctacaaatcggcaaaacaagacatcccatgaaggat 24047550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 32276649 - 32276515
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||||||||||||||||||| ||| |||| ||| ||||| ||||  | |||||| |||  ||||| ||||||||||||||| ||||||||||| |  |    
T  32276649 ttctttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaattgaagt 32276550  T
Q  129 tta-tctaaatcatgcaactcaattggtgttttga 162  Q
    ||| |||||||||| |||||| || ||||||||||    
T  32276549 ttattctaaatcattcaactccatgggtgttttga 32276515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 24187995 - 24188138
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaat---catgcaactcaattggtgttttgaatgttttgtagt 174  Q
    |||| ||||| |||||||||||| || |||||| ||||||| ||||||||||||| |||||   ||| |||||| |   ||||||||| | |||||||||    
T  24187995 gtttaaggaactttttgtattgtattcattcgagtcattgtgattcacttttatcctaaatattcattcaactccaaatgtgttttgagtattttgtagt 24188094  T
Q  175 gagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||||||||||| | ||||||  |||||| ||||||||    
T  24188095 gagaaatcatgtaaatcgaccaatcaaggcatcacatgaaggat 24188138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 39730488 - 39730615
Alignment:
Q  91 ttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    |||| ||| |||||||||| | || |||||||||||||||||| |||||||||||||||    |||||||||| | |||| |||||||||||||| ||||    
T  39730488 ttttctatagtttttattcaagtcgttgtaattcacttttatcctaaatcatgcaactctgcaggtgttttgagtatttt-tagtgagaaatcatataaa 39730586  T
Q  190 tcggcaaatcaatacatcacgtgaaggat 218  Q
    || ||||| ||| ||||||| ||||||||    
T  39730587 tcagcaaaacaagacatcacatgaaggat 39730615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 18236371 - 18236249
Alignment:
Q  96 tattgtttttattcgaatcattgtaattcacttttatct-aaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggc 194  Q
    ||||||||| |||||| |  || |||||||||||||||| |||||||||||||| ||  || |||||| | |||| |||||||||||||||||| |||||    
T  18236371 tattgttttcattcgagttgttataattcacttttatcttaaatcatgcaactccataagtattttgagtctttt-tagtgagaaatcatgtaactcggc 18236273  T
Q  195 aaatcaatacatcacgtgaaggat 218  Q
    ||| ||| ||||||| ||||||||    
T  18236272 aaaacaagacatcacatgaaggat 18236249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 21505292 - 21505089
Alignment:
Q  12 ctatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcga 111  Q
    ||||| ||||||| |  ||||||||||||||||  |||| ||| |  | |||||| |||||||  | |||||||||   | |||||||||||| | ||||    
T  21505292 ctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggagcatattgtattgttttcactcga 21505193  T
Q  112 atcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacg 210  Q
     || || ||||| ||||||||| ||||||||||||||   | | |||||||| |||||||||||||| ||||||||||||||  |||| || |||||||     
T  21505192 gtctttataatttacttttatcctaaatcatgcaacttcttagatgttttgagtgttttgtagtgaggaatcatgtaaatcgataaattaagacatcaca 21505093  T
Q  211 tgaa 214  Q
    ||||    
T  21505092 tgaa 21505089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 34063975 - 34063787
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||||||||| |||| |||||| |||||||||||||      ||  | ||||| |||| ||||||||||||||| |||||| |  ||||||||||||     
T  34063975 ttctttgcatttcaaggcaaattaaaagtcaattagag------tcaatggtttgtggaactttttgtattgttttcattcgagttgttgtaattcacta 34063882  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgt----agtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||| |||||||||||||||| |   ||||||||| | |||| |    |||||||| ||||||||||||||||| ||| |||||  |||||||||    
T  34063881 ttatcctaaatcatgcaactccacaagtgttttgagtttttttttttgagtgagaattcatgtaaatcggcaaaacaagacatcgtgtgaaggat 34063787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 18117024 - 18117147
Alignment:
Q  91 ttttgtattgtttttattcgaatcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 190  Q
    |||||||||||||| ||| || ||||||||||||||||| ||| |||| ||||||||   |||||||||||||| |||| ||   | |||||||||||||    
T  18117024 ttttgtattgttttcatttgagtcattgtaattcactttaatccaaataatgcaactaggttggtgttttgaatctttt-taacaaaaaatcatgtaaat 18117122  T
Q  191 cggcaaatcaatacatcacgtgaag 215  Q
    ||||||| ||| | ||| |||||||    
T  18117123 cggcaaaacaagatatcgcgtgaag 18117147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 21843138 - 21843006
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||  |||| ||  || | |||||||||||| |  | |||| |||||  | |||||||||||| |||||| ||||||||||| ||||    
T  21843138 ttctttgcatttgaagacaaataagttgtaatttagaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactt 21843039  T
Q  129 ttat-ctaaatcatgcaactcaattggtgtttt 160  Q
    |||| |||||||||||||||| || ||||||||    
T  21843038 ttatcctaaatcatgcaactctataggtgtttt 21843006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 21849158 - 21849020
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    ||||||||||  ||||||||||||||  || || ||||||||||||| ||||||| ||||||||||||||| || ||  |||||| | |||| |||||||    
T  21849158 gtttgaggaacattttgtattgttttcttt-gagtcattgtaattcagttttatcataaatcatgcaactccataggatttttgagtctttt-tagtgag 21849061  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||| ||||||||||| | | ||| ||||||| ||||||||    
T  21849060 aaataatgtaaatcggaagaacaagacatcacatgaaggat 21849020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 25474104 - 25474203
Alignment:
Q  117 tgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    ||||||||| | ||||| || |||||||||||| |  |||||||||| |||||||||||||| |||||||||||||  |||||||| |||||| ||||||    
T  25474104 tgtaattcagtattatcctagatcatgcaactccaaaggtgttttgactgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaag 25474203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 15829236 - 15829290
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  15829236 tgttttgcagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggat 15829290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 30998782 - 30998940
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 159  Q
    ||||| ||||||||  | ||||||||||  | |||||||||||| | | || || ||||| |||| ||||||| || ||||| |||||| || |||||||    
T  30998782 ttagatgagttgtcaatggtttgaggaacatattgtattgttttcacttgagtcgttgtacttcagttttatcctagatcatacaactccataggtgttt 30998881  T
Q  160 tgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||| |||||||||||||  | | |||||||||| |||||||| | |||| |||||||||    
T  30998882 tgagtgttttgtagtgaagagtgatgtaaatcgacaaatcaagatatcaagtgaaggat 30998940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 16593796 - 16593696
Alignment:
Q  119 taattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaagga 217  Q
    ||||||| ||||||| || |||||||||||| || |||||| ||| |||||||||||||  |||||||||||||  |||||||| ||||||  |||||||    
T  16593796 taattcagttttatcctagatcatgcaactccataggtgttctgagtgttttgtagtgaagaatcatgtaaatcatcaaatcaagacatcatttgaagga 16593697  T
Q  218 t 218  Q
    |    
T  16593696 t 16593696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 217
Target Start/End: Original strand, 35031714 - 35031870
Alignment:
Q  62 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 160  Q
    ||||||||||||   | ||||||||||  | |||||||||||| | |||| || |||||| | ||||||||| || ||||||||| || || ||||||||    
T  35031714 tagaggagttgttaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatgcaattccataggtgtttt 35031813  T
Q  161 gaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaagga 217  Q
    || ||||||||||| || |||||| |||||   |||||||| | ||||| |||||||    
T  35031814 gagtgttttgtagtcaggaatcatataaatatacaaatcaagatatcacatgaagga 35031870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 17240989 - 17240812
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||||| |||||||  |||||| |||||| |||||  |||||||  | ||||||||| |||||  ||||||||| |||||| || | |||||| | ||    
T  17240989 ttctttgcctttgaagacaaattaaaagtcatttagataagttgtcaatagtttgaggactttttc-tattgttttcattcgagtcgtcgtaatttagtt 17240891  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcac 209  Q
    |||| |||||||||||||||  || ||||  |||| |||||| |||||| ||||||| ||||| |||||| ||| |||||||    
T  17240890 ttattctaaatcatgcaacttcataggtg--ttgagtgtttt-tagtgaaaaatcatataaattggcaaaacaagacatcac 17240812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 17415173 - 17415104
Alignment:
Q  153 ggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    |||||||||| | |||| |||||||||||| |||||||||||||| ||| |||||||||||||||| ||||    
T  17415173 ggtgttttgagtctttt-tagtgagaaatcgtgtaaatcggcaaaacaagacatcacgtgaaggatcgagg 17415104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 18818679 - 18818866
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    ||||||||| |||| |||||| |||  | ||| |||| ||| || | |||| |||||  |||| ||||||||| ||| || || ||| |||| | |||||    
T  18818679 tttgcattttaaggcaaattataagctatttaaaggatttgccgatggtttaaggaacattttatattgttttcatttgagtcgttgaaatttagtttta 18818778  T
Q  132 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    || |||||||||||| || || |  ||||| | | |||| || |||||||||||||||||||||||| |||  ||||||||||||||||    
T  18818779 tcataaatcatgcaagtccatagacgttttcagtctttt-tattgagaaatcatgtaaatcggcaaaacaaggcatcacgtgaaggatt 18818866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 1733206 - 1733261
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    |||||||||||||| |||||||||||||  |||| ||| |||||||||||||||||    
T  1733206 tgttttgtagtgaggaatcatgtaaatcatcaaagcaagacatcacgtgaaggatt 1733261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 21844765 - 21844646
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||  |||| ||  || | ||||||||||||||  | |||| |||||  | || ||||||||| |||||| ||||||||||| |||     
T  21844765 ttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaacatgttatattgttttcattcgagtcattgtaatttactc 21844666  T
Q  129 ttat-ctaaatcatgcaact 147  Q
    |||| |||||||||||||||    
T  21844665 ttatcctaaatcatgcaact 21844646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 35707907 - 35707969
Alignment:
Q  153 ggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    |||||||||| |||||||||||||| |||||||||||||   ||||||| |||||| ||||||    
T  35707907 ggtgttttgagtgttttgtagtgaggaatcatgtaaatcataaaatcaagacatcatgtgaag 35707969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 28278559 - 28278386
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||| |||| |||||  | |||||||| || ||  | |||||| |||  |  |||||| |||| | | || || |||||||||||||    
T  28278559 ttctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttgaagaacatagtgtattattttcacttgagtcgttgtaattcactt 28278460  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaa 201  Q
    ||||| || |||||||||||| || | | |||| | |||||||| || ||||| ||||||||||  ||||||||    
T  28278459 ttatcctagatcatgcaactccatagatattttaagtgttttgtggtaagaaagcatgtaaatcaacaaatcaa 28278386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 32619744 - 32619793
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtga 213  Q
    |||||||||| |||||||||||||| ||| |||||||| |||||||||||    
T  32619744 tgttttgtagcgagaaatcatgtaattcgacaaatcaagacatcacgtga 32619793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 14922030 - 14921988
Alignment:
Q  173 gtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||    
T  14922030 gtgagaaatcatgtaaatcggaaaaacaatacatcatgtgaag 14921988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 19949574 - 19949500
Alignment:
Q  144 aactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||| || |||||||||| ||||||||||| || ||||||||| ||   |||||||| |||||| |||||||||    
T  19949574 aactccataggtgttttgagtgttttgtagtaaggaatcatgtagattatcaaatcaaaacatcatgtgaaggat 19949500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 22525789 - 22525743
Alignment:
Q  29 ttctttgca-tttgaaggaaaattagaagtcaattagaggagttgtc 74  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  22525789 ttctttgcaatttgaaggcaaattagaagtcatttagaggagttgtc 22525743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 31449939 - 31450104
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttt-t 130  Q
    |||||||||||||  || ||| |||||| ||||||||||||| | | |||| |||||| ||||||||| |||| ||| || ||||| ||| ||| ||| |    
T  31449939 tttgcatttgaagacaatttataagtcatttagaggagttgtagatggttttaggaatattttgtatttttttcattagagtcattataaatcagtttat 31450038  T
Q  131 atctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 197  Q
      || ||| ||||||||  || |||||||||| | |||| || ||| ||||||||| | ||||||||    
T  31450039 tccttaattatgcaactttataggtgttttgagtatttt-tattgataaatcatgtgattcggcaaa 31450104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 25727995 - 25727854
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    |||| |||||| | |||||||||||| | || |||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  25727995 gtttaaggaatgtattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag 25727896  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    ||||||||||||||| |||||||||| ||||| |||||||||    
T  25727895 aaatcatgtaaatcgacaaatcaatatatcacatgaaggatt 25727854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 25736403 - 25736262
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    |||| |||||| | |||||||||||| | || |||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  25736403 gtttaaggaatgtattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag 25736304  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    ||||||||||||||| |||||||||| ||||| |||||||||    
T  25736303 aaatcatgtaaatcgacaaatcaatatatcacatgaaggatt 25736262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 26657488 - 26657645
Alignment:
Q  62 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 160  Q
    |||||||||||||  | ||||||||||| |  ||||||||||| | |||| || |||||||||||||||||| || |||| ||||||| || ||||||||    
T  26657488 tagaggagttgtcaatggtttgaggaatataatgtattgttttcactcgattcgttgtaattcacttttatcctagatcacgcaactccataggtgtttt 26657587  T
Q  161 gaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    || ||||||||||||| ||||||||||||||| |||||||| |||| | |||||||||    
T  26657588 gagtgttttgtagtgaaaaatcatgtaaatcgacaaatcaagacattaggtgaaggat 26657645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 30675493 - 30675653
Alignment:
Q  59 aattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgt 157  Q
    ||||||||||||||||  | ||||||||||  | |||||||||||| | |||| || ||||||| ||||||| || || |||||||||||| || |||||    
T  30675493 aattagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcctatatcatgcaactccataggtgt 30675592  T
Q  158 tttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||| |||||| |||||||||||||||||||||||||| | || |||||| |||||||||    
T  30675593 tttgagtgttttatagtgagaaatcatgtaaatcggcaatttaagacatcatgtgaaggat 30675653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 52271406 - 52271186
Alignment:
Q  2 atgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgt 101  Q
    |||||||| |||||| ||||||||||||||||||||||| |||| ||| ||| | |||| ||||||||||||| || |||||||||| ||| |||| | |    
T  52271406 atgtttttaactatgtttttagtgtaattctttgcatttaaaggcaaaataggattcaa-tagaggagttgtcattggtttgaggaaatttgtgtacttt 52271308  T
Q  102 ttttattcgaatcattgtaattcacttt-tatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatca 200  Q
    ||| |||  | || |||| ||||||||| |  |||||| ||||||||| || | |||||||| | |||| ||||||||||| ||||||||||||||| ||    
T  52271307 tttcatttaagtcgttgtcattcactttattcctaaattatgcaactccatagatgttttgagtctttt-tagtgagaaattatgtaaatcggcaaaaca 52271209  T
Q  201 atacatcacgtgaaggattgagg 223  Q
    | ||  |||||||||||| ||||    
T  52271208 aaacgccacgtgaaggatcgagg 52271186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 15299005 - 15298811
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||| ||| ||||||||||||| ||| | ||||||||  | |||||||||| |||||||||||| || ||| |||||||||||||| | ||    
T  15299005 ttctttgcatttgcaggcaaattagaagtcatttacaagagttgtcaatggtttgaggaagtttttgtattgtattcatttgaatcattgtaattaagtt 15298906  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    |||| | |||||||||||||  || |||||||||  | | || |||||| |||||||||||||||||||| ||| | |||| || |||||| ||||    
T  15298905 ttatccaaaatcatgcaacttcataggtgttttgtgtctatt-tagtgataaatcatgtaaatcggcaaaacaagaaatcatgtaaaggatcgagg 15298811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 31313531 - 31313721
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||| |||| |||  ||| |||||| |||||||  |   || |||||  ||||||||||||||  ||| | || |||||||||||||    
T  31313531 ttctttgcatttgaaggcaaataagagttcatttagagaagttgtcaatgtctttaggaacgttttgtattgttttcgttcaagtcgttgtaattcactt 31313630  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    ||||| ||||||||||||||  || |||||||||| | |||| |||| ||||||||||||||| || ||| |||||||||||||||||||||    
T  31313631 ttatcctaaatcatgcaacttcataggtgttttgagtttttt-tagtaagaaatcatgtaaattggaaaaacaatacatcacgtgaaggatt 31313721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 25730643 - 25730517
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||| |||| |||||||| |||||| ||||||| ||||||||||||||  |  |||||||||| |||||||||| |||||||||||||||||    
T  25730643 ttgtattgttttcattcaaatcattgaaattcaattttatcctaaatcatgcaacttcacaggtgttttgagtgttttgtagcgagaaatcatgtaaatc 25730544  T
Q  192 ggcaaatcaatacatcacgtgaaggat 218  Q
    | |||||||| | ||||| ||||||||    
T  25730543 gacaaatcaagatatcacatgaaggat 25730517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 30781739 - 30781929
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||  |||| ||| |  | ||||||||||||| | |  ||| || ||| | |||||||||||| | ||||  |||||||||||| ||    
T  30781739 ttctttgcatttgaagacaaataagatgagagttagaggagttgttgataattttagaaatatattgtattgttttcaatcgagacattgtaattcagtt 30781838  T
Q  129 ttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||| || ||||| |||||| || |||||||||| |||||||||||||| |||||||||||||  |||||||| |||||| |||||||||    
T  30781839 ttatccaagatcatacaactccataggtgttttgagtgttttgtagtgaggaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 30781929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 25126462 - 25126653
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||| ||| ||||||||| || |||||||||||  | ||||||| |||||||||||||||||||||| || || | |||||||| |||||    
T  25126462 tttgcatttgaaggcaaaatagaagtcatttggaggagttgtcaatggtttgagaaattttttgtattgtttttatttgagtcgtggtaattcagtttta 25126561  T
Q  132 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    | ||||||||||  | |  ||  ||||||||| | |||| || |||||||||||||||||  | |||  || |||||||||||||||||||||    
T  25126562 tcctaaatcatgtgattatatatgtgttttgagtctttt-taatgagaaatcatgtaaattagaaaaataagacatcacgtgaaggattgagg 25126653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 26102036 - 26102221
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||| | |||| ||| |||| |||||| | || ||  | |||||||||   |||||||||||||| |||||| |  |||||||||||||    
T  26102036 ttctttgcatttgaacgcaaataagaggtcatttagagaatttatcaatggtttgaggaccattttgtattgttttcattcgagttgttgtaattcactt 26102135  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||| |||||||||||||||| || |||||||||| | |||| |||||||| ||| || |||||| |||| ||| ||||||||||||    
T  26102136 ttatcctaaatcatgcaactccatgggtgttttgagtctttt-tagtgagatatcgtgcaaatcgacaaaacaagacatcacgtgaa 26102221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 34381690 - 34381875
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||| |||| ||| || | |||||||||||||   | |||||| |||  | || ||||||||| |||||| || ||||||||||||| ||    
T  34381690 tttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaacatattatattgttttcattcgagtcgttgtaattcacttcta 34381789  T
Q  132 t-ctaaatcatgcaactcaattggtgttttgaatgttttgta--gtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    | |||||||| ||||||  || |||||||||| | |||||||  |||| |||| |||||||||| |||||||| ||||||||||||    
T  34381790 ttctaaatcacgcaacttcataggtgttttgagtattttgtatagtgaaaaataatgtaaatcgacaaatcaaaacatcacgtgaa 34381875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 191
Target Start/End: Original strand, 23223422 - 23223554
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgttttt-attcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtt 158  Q
    ||||||||||||||  | ||||||||||    ||||||| ||||| | |||| || |||||||| ||||||||| ||||||||||||||| |  ||||||    
T  23223422 ttagaggagttgtcaatggtttgaggaacacattgtattttttttcactcgattcgttgtaatttacttttatcctaaatcatgcaactccaaaggtgtt 23223521  T
Q  159 ttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    || ||||||||||||||||||||||||||||||    
T  23223522 tttaatgttttgtagtgagaaatcatgtaaatc 23223554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 11770131 - 11769944
Alignment:
Q  28 attctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcact 127  Q
    |||||||||||||||||  |||| ||| |  | |||||| | |||||  | |||| |||||  | |||||||||||| | |||  || ||||||||||||    
T  11770131 attctttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgtattgttttcactcgtgtcgttgtaattcact 11770032  T
Q  128 tttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||| ||||||||| ||||  || ||||| |||| ||||||| |||||||||||||||||||||  ||||||| ||||||| ||||    
T  11770031 tttatcctaaatcatgaaacttcatgggtgtgttgagtgttttgcagtgagaaatcatgtaaatcgaaaaatcaagacatcacatgaa 11769944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 19257931 - 19257745
Alignment:
Q  37 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 135  Q
    |||||||| |||||||||| ||| ||||||  ||||||  |  ||||||||| ||| ||||||||||| |||| | ||||||||||||  |||||| |||    
T  19257931 atttgaagaaaaattagaattcatttagagaggttgtcaatgatttgaggaactttctgtattgttttcattctagtcattgtaattcgattttatccta 19257832  T
Q  136 aatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    |||||||||| ||  | |||||||||| | |||| |||||||||||| ||||||| |||| | ||| ||||||| |||| ||| ||||    
T  19257831 aatcatgcaagtccttaggtgttttgagtatttt-tagtgagaaatcgtgtaaattggcataacaagacatcacatgaaagatcgagg 19257745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 18795160 - 18795349
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||||||||||||||||||| ||| |||| |||||||| || ||  | ||||||||||  |||||||| ||||| ||| || | ||||||||| ||||    
T  18795160 ttctttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacattttgtatcgttttcatttgagtaattgtaatttactt 18795259  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||| |||| |||| || ||  || |||||||||| |  ||| |||||||||||| |||||||| ||||| ||| ||||||| ||| ||||    
T  18795260 ttatcctaagtcatacagcttcataggtgttttgagtcattt-tagtgagaaatcgtgtaaatcagcaaaacaagacatcacatgatggat 18795349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 8247684 - 8247607
Alignment:
Q  137 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||||| || |||||||||| |||||||||||||| |||||||||||||  |||||||| ||||||||||||    
T  8247684 atcatgcaactccataggtgttttgagtgttttgtagtgaggaatcatgtaaatcaacaaatcaagacatcacgtgaa 8247607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 50047160 - 50047321
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||  |||| ||| |  || |||||||||||||  |  |||||| ||  | |||||||||||| | |||| |||| |||||||||||    
T  50047160 ttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttttcactcgagtcatggtaattcactt 50047259  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    ||||| |||||||| |||||| ||   |||||||| |||||||||| |||||||||||||||    
T  50047260 ttatcctaaatcatacaactccatatatgttttgagtgttttgtagcgagaaatcatgtaaa 50047321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 18301089 - 18300949
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatctaaa-tcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    ||||||||||| | ||||| ||||||  ||  | || |||||||| ||||||||| ||| ||||||||||  || |||||||||| ||||||  |||||     
T  18301089 gtttgaggaatatattgtactgttttctttaaagtcgttgtaattgacttttatcgaaaatcatgcaacttcataggtgttttgagtgttttaaagtgat 18300990  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
     |||||||||||| | |||||||| ||||||||||||||||    
T  18300989 gaatcatgtaaatagacaaatcaagacatcacgtgaaggat 18300949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 23521729 - 23521675
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  23521729 tgttttgtagtgagaaatcatgtaaatcgacacatcaagacatcacgtgaaggat 23521675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 21551010 - 21550933
Alignment:
Q  34 tgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcga 111  Q
    |||||||||||| |||| ||| |||||||||||||||||||  | ||||||||||  |||||||||||||| ||||||    
T  21551010 tgcatttgaaggcaaatcagaggtcaattagaggagttgtctatggtttgaggaacattttgtattgttttcattcga 21550933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 23519768 - 23519714
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||||||||||||||||||||| || ||||| |||| |||||||||||    
T  23519768 tgttttgtagtgagaaatcatgtaaatcgacacatcaagacattacgtgaaggat 23519714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 25494488 - 25494443
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcac 209  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||    
T  25494488 tgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcac 25494443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 15417047 - 15416920
Alignment:
Q  91 ttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    |||| ||||||||| |||| | ||||| ||||||||||||||| ||||||||||||||  || |||||||||| | |||| ||  |  |||||||||||     
T  15417047 ttttttattgttttcattcaattcattttaattcacttttatcttaaatcatgcaactgtataggtgttttgagtctttt-tatagtcaaatcatgtaat 15416949  T
Q  190 tcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||| ||| ||| ||| ||||||||    
T  15416948 tcggcaaagcaagacaccacatgaaggat 15416920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 25266417 - 25266329
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaa 180  Q
    |||||||||||| | |||| ||||||||||||| ||||||||   |||||| ||||  ||  ||||||||| |||||||||||||||||    
T  25266417 ttgtattgttttcactcgagtcattgtaattcatttttatcttggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 25266329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 19884201 - 19884271
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactc 148  Q
    ||||||||||  |||| ||||||||| |||||| ||  |||||||| |||||||| |||||||||||||||    
T  19884201 gtttgaggaaccttttatattgttttcattcgattcgatgtaattctcttttatcctaaatcatgcaactc 19884271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 12810334 - 12810418
Alignment:
Q  62 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaa 145  Q
    |||||||||||||  | ||||||||||  | |||||||||||| |||| | || |||||||||| |||||| ||| |||||||||    
T  12810334 tagaggagttgtcaatggtttgaggaacatattgtattgttttcattcaagtcgttgtaattcatttttatcctagatcatgcaa 12810418  T

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Target: scaffold0065 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 12315 - 12416
Alignment:
Q  120 aattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    |||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  12315 aattcactcttatctaaatcatgcaactccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggatt 12414  T
Q  220 ga 221  Q
    ||    
T  12415 ga 12416  T

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Target: scaffold0065; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 12064 - 12189
Alignment:
Q  12 ctatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcga 111  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||  | |||||||||| ||||||||||||||| |||||     
T  12064 ctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtttgaggaactttttgtattgttttcattcgt 12163  T
Q  112 atcattgtaattcacttttatctaaa 137  Q
     || || ||||||||  |||||||||    
T  12164 gtcgttttaattcacacttatctaaa 12189  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 16634089 - 16634214
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||| | |||| || ||||||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||    
T  16634089 ttgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgcaactctataggtgttttgaatgttttgcagtgagaaatcatataaatc 16634188  T
Q  192 ggcaaatcaatacatcacgtgaagga 217  Q
    | |||||||| |||||||||||||||    
T  16634189 gacaaatcaagacatcacgtgaagga 16634214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 23157924 - 23157807
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||| |||| |||||||||| ||| || || |||||||||||||    
T  23157924 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaatggtttgaggaacttttggtattgttttcatttgagtcgttgtaattcactt 23157825  T
Q  129 ttatc-taaatcatgcaa 145  Q
    ||||| ||||||||||||    
T  23157824 ttatcataaatcatgcaa 23157807  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 26070453 - 26070642
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||||||||| |||| |||| ||| |||| ||||||||||||||  |  |||||||||  ||| |||||||||| |||||| | | ||||||||| ||    
T  26070453 ttctttgcattttaaggcaaataagaggtcatttagaggagttgtcaatcatttgaggaaaatttagtattgttttcattcgagttaatgtaattcagtt 26070552  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||| ||||||||||||||| ||  ||||||||| | |||| |||||||||||||||||||| |||||| ||| ||||||| ||||||||    
T  26070553 ttatcataaatcatgcaactccataagtgttttgagtctttt-tagtgagaaatcatgtaaattggcaaaacaagacatcacatgaaggat 26070642  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 19331497 - 19331651
Alignment:
Q  36 catttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ct 134  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||| || |||||||||||| || |||||| || |||||||| | |||||| ||    
T  19331497 catttgaaggaaaattagaattcaattagaggagttgtcaattgtttgagaaactttttgtattgtgttcattcgagtcgttgtaatttagttttatcct 19331596  T
Q  135 aaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcg 192  Q
    ||||||||||| || ||  ||||||||| | |||| | ||||||||||||||||||||    
T  19331597 aaatcatgcaattccat--gtgttttgagtctttt-ttgtgagaaatcatgtaaatcg 19331651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 20083445 - 20083636
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||| |||||| || | | ||||||||||||||  | ||||||||||  |||| |||||||||||||||| |  |||||||||| ||    
T  20083445 ttctttgcatttgaaggcaaattaaaaatta-ttagaggagttgtcaatagtttgaggaacattttttattgtttttattcgagtatttgtaattcagtt 20083543  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaat-gttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
     ||| ||||||||||||| || || |||||||||| |  |||| |||||| |||| ||||||||||||||| ||| |||||||||||| ||||    
T  20083544 ctatcctaaatcatgcaattccataggtgttttgagtctttttttagtgaaaaattatgtaaatcggcaaaacaaaacatcacgtgaaagatt 20083636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 20694622 - 20694808
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    ||||||||| ||||||||||| |||  | |||||||| |||||  | |||||||||| ||||||||||||||| |||||| ||||||||||||| |||||    
T  20694622 tttgcatttaaaggaaaattaaaagatatttagaggatttgtcaatggtttgaggaactttttgtattgttttcattcgagtcattgtaattcagtttta 20694721  T
Q  132 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    | | |||| || |||||  ||  ||||||||| | |||| |||| |||||||||||||||||||||| ||| ||||||  ||||||||    
T  20694722 tcccaaattattcaactgcatatgtgttttgagtctttt-tagtaagaaatcatgtaaatcggcaaaacaagacatcatatgaaggat 20694808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 24841765 - 24841922
Alignment:
Q  62 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 160  Q
    |||||||||| ||  | ||||||||||  | |||||||||||| | |||| || |||||| ||||||||||| || |||||| ||||| || ||||||||    
T  24841765 tagaggagttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaagtcacttttatcctagatcatggaactccataggtgtttt 24841864  T
Q  161 gaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
     | ||||||||||||||||||||||||||| |  ||||||| ||| ||||||||||||    
T  24841865 tagtgttttgtagtgagaaatcatgtaaattgaaaaatcaagacaacacgtgaaggat 24841922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 11274361 - 11274276
Alignment:
Q  133 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||||||||| || |||||||||| ||||||||||| |||||||||||| |||| |||||||| ||||||| ||||||||    
T  11274361 ctaaatcatgcaactccataggtgttttgagtgttttgtagtaagaaatcatgtatatcgacaaatcaagacatcacatgaaggat 11274276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 16603758 - 16603590
Alignment:
Q  18 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaatt-ttttgtattgtttttattcgaatcat 116  Q
    |||||||||| ||| ||| ||||||||| ||||||||||| ||||||||   |||||| |  ||||||||| | |||| ||||||||| |||||| || |    
T  16603758 ttttagtgtatttccttgtatttgaaggtaaattagaagtgaattagag---ttgtcgatgatttgaggaactcttttttattgttttgattcgagtcgt 16603662  T
Q  117 tgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgta 187  Q
    ||||||| | ||||| | |||||||||||| |  || |||||||||| |||||| |||||||||||||||||    
T  16603661 tgtaattaaattttagcctaaatcatgcaatttcataggtgttttgagtgttttctagtgagaaatcatgta 16603590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 17382168 - 17381990
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||  |||| ||| |  | ||||||||||||||  | ||||||||||  | |||||||||||| | || |||| ||||| ||||||||||    
T  17382168 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgttttcactcaaatcgttgtatttcactttta 17382069  T
Q  132 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    || ||||||||||||||         || ||| ||||||||||||||||||||||||||||| |||||||| |||| | |||||||||    
T  17382068 tcctaaatcatgcaact---------ttatgagtgttttgtagtgagaaatcatgtaaatcgtcaaatcaagacataatgtgaaggat 17381990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 17027556 - 17027690
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    ||||||||||  | ||| |||||||| | | || || |||||||||||||||||| ||||||| ||||||| || |||||||||| |||||||   ||||    
T  17027556 gtttgaggaacatattgaattgttttcacttgagtcgttgtaattcacttttatcctaaatcacgcaactccataggtgttttgactgttttgccatgag 17027655  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtg 212  Q
    |||||||||||||||  ||||||| ||||||||||    
T  17027656 aaatcatgtaaatcgaaaaatcaagacatcacgtg 17027690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 18222536 - 18222658
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||| | |||| ||||||||||||||||||||| |||||||||||| || || |||||||||| |||||| |||| || ||| |||||||||    
T  18222536 ttgtattgttttaactcgagtcattgtaattcacttttatcctaaatcatgcaaatccataggtgttttgagtgttttatagtaagtaattatgtaaatc 18222635  T
Q  192 ggcaaatcaatacatcacgtgaa 214  Q
      ||||||||  || ||||||||    
T  18222636 aacaaatcaaggcaacacgtgaa 18222658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 24517335 - 24517514
Alignment:
Q  31 ctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt 130  Q
    ||||||||||||||  |||| ||| |  ||||||||||||||||  | ||||||||||  | |||||||||||| |  ||| || ||||||||||| |||    
T  24517335 ctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgttttcacccgagtcgttgtaattcacattt 24517434  T
Q  131 atc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||| | ||||||| ||||| || |||||||||         || | |||||||||||||||||| ||||||||||||||||||||||||    
T  24517435 atccttaatcatgtaactccataggtgttttg---------taataagaaatcatgtaaatcggtaaatcaatacatcacgtgaaggat 24517514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 215
Target Start/End: Complemental strand, 7742997 - 7742819
Alignment:
Q  37 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 135  Q
    ||||||||| | || |||||||| ||||| ||||||||  | |||||| |||  ||||||||||||||  ||||| || ||||||||||||||||| |||    
T  7742997 atttgaaggcagataagaagtcatttagacgagttgtcaatggtttgaagaacattttgtattgttttcgttcgagtctttgtaattcacttttatccta 7742898  T
Q  136 aatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    ||||||| ||    ||  ||||||||| | |||| || |||||||||||||||||| | ||| ||| |||||||||||||    
T  7742897 aatcatgtaaaatcatatgtgttttgagt-ttttttaatgagaaatcatgtaaatcagtaaaacaaaacatcacgtgaag 7742819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 25367574 - 25367636
Alignment:
Q  4 gttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagag 66  Q
    |||||| |||||| ||||||| || ||||||||||||||||||||||||||||||||||||||    
T  25367574 gtttttaactatgtttttagtatatttctttgcatttgaaggaaaattagaagtcaattagag 25367636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 11997968 - 11997863
Alignment:
Q  91 ttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    |||||||||||||||||||   |||||| ||||  ||||||| |||||||||||||||  || |||||||||| | |||| |||||||||| ||||||||    
T  11997968 ttttgtattgtttttattcaggtcattgcaatttccttttatactaaatcatgcaacttcataggtgttttgagttttttttagtgagaaaacatgtaaa 11997869  T
Q  190 tcggca 195  Q
    ||||||    
T  11997868 tcggca 11997863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 24411031 - 24410871
Alignment:
Q  63 agaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttg 161  Q
    ||||||||||||  | ||||||||||  |||||||||||||| ||| || || |||||||||| |||||| ||||||| |||||||     |||||||||    
T  24411031 agaggagttgtcaatggtttgaggaaaattttgtattgttttcatttgagtcgttgtaattcagttttatcctaaatcgtgcaacttgcgaggtgttttg 24410932  T
Q  162 aatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    | | |||| |||||||||||||||| ||| ||||||  || ||||||| |||||||| ||||    
T  24410931 agtatttt-tagtgagaaatcatgtcaattggcaaaataagacatcacatgaaggatcgagg 24410871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 22229833 - 22229973
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    |||| |||||| | |||||||||||| | | || || |||||||||| ||||||| || | |||||||||| |   ||||||||  | ||||||||||||    
T  22229833 gtttaaggaatgtattgtattgttttcacttgagtcgttgtaattcagttttatcctagaccatgcaactccacaagtgttttgggtattttgtagtgag 22229932  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
     |||||||||||||  |||||||| ||||||||||||||||    
T  22229933 gaatcatgtaaatcaacaaatcaagacatcacgtgaaggat 22229973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 15205658 - 15205801
Alignment:
Q  65 aggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaa 163  Q
    ||||||||||  | ||||||||||  | |||||||||||| | |||| || |||||||||| |||| | ||| ||||||||| || || ||||||||||     
T  15205658 aggagttgtcagtggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcagttttctcctagatcatgcaattccataggtgttttgag 15205757  T
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatc 207  Q
    ||||||| |||||| ||| |||||||||  |||||||| |||||    
T  15205758 tgttttgcagtgaggaataatgtaaatcatcaaatcaaaacatc 15205801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 18873168 - 18873118
Alignment:
Q  19 tttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggag 69  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  18873168 tttagtataattctttgcatttgaaggaaaattagaagtcaattggaggag 18873118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 19763976 - 19763842
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    ||||| |||| ||||||||||||||| ||| ||  || |||| |||| ||||||| ||||||||||||||  ||  ||||||||| | |||| |||||||    
T  19763976 gtttgtggaactttttgtattgttttcatttgaggcaatgtagttcagttttatcctaaatcatgcaacttcat--gtgttttgagtctttt-tagtgag 19763880  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaag 215  Q
    |||||||||||||||||||| | | |||||| ||||||    
T  19763879 aaatcatgtaaatcggcaaaacgagacatcaagtgaag 19763842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 25075323 - 25075258
Alignment:
Q  153 ggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||| ||||||||||| ||||||||||||||||  |||||||| |||||| |||||||||    
T  25075323 ggtgttttgagtgttttgtagtaagaaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 25075258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 25133292 - 25133227
Alignment:
Q  153 ggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||| ||||||||||| ||||||||||||||||  |||||||| |||||| |||||||||    
T  25133292 ggtgttttgagtgttttgtagtaagaaatcatgtaaatcatcaaatcaagacatcatgtgaaggat 25133227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 26330116 - 26330015
Alignment:
Q  116 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    ||||||||| |||||||| || |||||||||||  || |||||||||| |||||||||||  |||||||||||||| |  ||||||| ||||||| ||||    
T  26330116 ttgtaattcccttttatcctagatcatgcaacttcataggtgttttgagtgttttgtagt--gaaatcatgtaaattgaaaaatcaagacatcacatgaa 26330019  T
Q  215 ggat 218  Q
    ||||    
T  26330018 ggat 26330015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 30790763 - 30790944
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||| | |||| |||||||||||||||||| ||||  | |||| || ||  ||||||     ||||||| || || || ||||||| |||||    
T  30790763 tttgcatttgaaagcaaataagaagtcaattagaggagatgtcaatggttttagtaacattttgt-----ttttatttgagtcgttataattcagtttta 30790857  T
Q  132 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    || ||||| || |||||  ||||||||||||| | |||| |||||| |||| ||||||||||||||  ||| |||||| |||||||||    
T  30790858 tcctaaattatccaacttcattggtgttttgagtctttt-tagtgaaaaattatgtaaatcggcaacacaagacatcatgtgaaggat 30790944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 12340066 - 12339960
Alignment:
Q  113 tcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgt 211  Q
    ||||||||||||| |||||| ||| |||||||||||  ||  || |||||  ||||||||||| || |||||| ||||||  |||||||| |||||||||    
T  12340066 tcattgtaattcagttttatactagatcatgcaacttcatatgtattttgcgtgttttgtagtaaggaatcatataaatcaacaaatcaagacatcacgt 12339967  T
Q  212 gaaggat 218  Q
    |||||||    
T  12339966 gaaggat 12339960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 22644000 - 22643955
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtc 74  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  22644000 ttctttgtatttgaaggaaaattagaagtcatttagaggagttgtc 22643955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 22754963 - 22755056
Alignment:
Q  119 taattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgt 211  Q
    ||||||| ||||||| || || ||||||||  || |||||||||| ||||||| ||||||||||||||||||||  |||||||| |||| ||||    
T  22754963 taattcagttttatcctagattatgcaacttcataggtgttttgagtgttttgaagtgagaaatcatgtaaatcatcaaatcaagacataacgt 22755056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 25594778 - 25594642
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    ||||||||||  | |||||||||||| | | || |  ||||| |||| ||||||| ||||| ||||||||  ||  ||||||||| |||||| |||||||    
T  25594778 gtttgaggaacatattgtattgttttcactggagttgttgtatttcatttttatcctaaatgatgcaacttcatatgtgttttgagtgttttatagtgag 25594679  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||||||||  |||| || ||||||| ||||    
T  25594678 aaatcatgtaaatcgaaaaattaagacatcacatgaa 25594642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 16622676 - 16622621
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    ||||||| ||||||||||||||||||| | |||||||| ||||||| |||||||||    
T  16622676 tgttttgcagtgagaaatcatgtaaattgacaaatcaagacatcacatgaaggatt 16622621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 25367664 - 25367737
Alignment:
Q  120 aattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 193  Q
    |||||| ||||||| ||||||||||||||  || |||||||||| | |||| |||||||||||||||||||||||    
T  25367664 aattcagttttatcataaatcatgcaacttcataggtgttttgagtctttt-tagtgagaaatcatgtaaatcgg 25367737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 4325431 - 4325399
Alignment:
Q  91 ttttgtattgtttttattcgaatcattgtaatt 123  Q
    |||||||||||||||||||||||||||||||||    
T  4325431 ttttgtattgtttttattcgaatcattgtaatt 4325399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 24268574 - 24268654
Alignment:
Q  69 gttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactc 148  Q
    ||||||| | ||||||||||  | |||||||||||| | |||| ||||| |||||||||||||| ||| ||||||||||||    
T  24268574 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgcaactc 24268654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 24345203 - 24345283
Alignment:
Q  69 gttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactc 148  Q
    ||||||| | ||||||||||  | |||||||||||| | |||| ||||| |||||||||||||| ||| ||||||||||||    
T  24345203 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgcaactc 24345283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 25680625 - 25680708
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta-tctaaatcatgcaactcaattggtgttttg 161  Q
    ||||||||||  | |||||||||||| | |||| || |||||||||| ||||| ||||||||||||||||  || |||||||||    
T  25680625 gtttgaggaacatattgtattgttttcactcgagtcgttgtaattcaattttattctaaatcatgcaacttcataggtgttttg 25680708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 29150977 - 29150882
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    ||||||| |||| | | |||||||||||||||| ||||||| |||||||||||| |  ||  |||||||||  ||||| |||||||||||| ||||||    
T  29150977 ttgtattattttcacttgaatcattgtaattcatttttatcttaaatcatgcaatttcataagtgttttga--gttttttagtgagaaatcttgtaaa 29150882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 1879 - 1980
Alignment:
Q  120 aattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    |||||||| |||||||||||||||||||| || ||||||||||  |||||||||||||||||| ||||||||  |||||||| |||||||||||||||||    
T  1879 aattcactcttatctaaatcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatcaacaaatcaagacatcacgtgaaggatt 1978  T
Q  220 ga 221  Q
    ||    
T  1979 ga 1980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 1628 - 1753
Alignment:
Q  12 ctatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcga 111  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||  | |||||||||| ||||||||||||||| |||||     
T  1628 ctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtttgaggaactttttgtattgttttcattcgt 1727  T
Q  112 atcattgtaattcacttttatctaaa 137  Q
     || || ||||||||  |||||||||    
T  1728 gtcgttttaattcacacttatctaaa 1753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 24507486 - 24507385
Alignment:
Q  120 aattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggatt 219  Q
    |||||||| |||||||||||||||||||| || ||||||||||  |||||||||||||||||| ||||||||  |||||||| |||||||||||||||||    
T  24507486 aattcactcttatctaaatcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatcaacaaatcaagacatcacgtgaaggatt 24507387  T
Q  220 ga 221  Q
    ||    
T  24507386 ga 24507385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 24507737 - 24507612
Alignment:
Q  12 ctatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcga 111  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||  | |||||||||| ||||||||||||||| |||||     
T  24507737 ctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtttgaggaactttttgtattgttttcattcgt 24507638  T
Q  112 atcattgtaattcacttttatctaaa 137  Q
     || || ||||||||  |||||||||    
T  24507637 gtcgttttaattcacacttatctaaa 24507612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 17860534 - 17860394
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatct-aaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    ||||||||||  ||||||||| |||| | |||| ||||||| ||| |||||||||| |||||||||||||| ||  ||| ||||| ||||||||||||||    
T  17860534 gtttgaggaacattttgtattattttcactcgagtcattgtcatttacttttatcttaaatcatgcaactccatacgtgctttgagtgttttgtagtgag 17860435  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||| ||  |||||||  ||||||||||||||||    
T  17860434 aaatcatgtaattcaacaaatcaggacatcacgtgaaggat 17860394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 14768395 - 14768219
Alignment:
Q  38 tttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta-tctaa 136  Q
    |||||||| |||| |||  | |||||||||||||||| || |||||||||||||||||||||| ||| |||||| | |||||||||||| |||| |||||    
T  14768395 tttgaaggcaaatgagagattaattagaggagttgtcattggtttgaggaattttttgtattggtttcattcgagttattgtaattcacatttattctaa 14768296  T
Q  137 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    | ||||||| |  ||   |||||||| | ||||  ||  |||||||||||||||||||||| ||| ||||||| ||||    
T  14768295 aacatgcaatttcataaatgttttgagtctttt-cagatagaaatcatgtaaatcggcaaaacaagacatcacatgaa 14768219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 9943267 - 9943108
Alignment:
Q  47 aaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaa 145  Q
    |||| ||| |||| ||||||||||||||  | ||||||||||| |||||||| ||| | |||| |    ||||||||||||||||| |||||||||||||    
T  9943267 aaataagaggtcatttagaggagttgtccatcgtttgaggaatattttgtatagttatcattcaagctgttgtaattcacttttatcctaaatcatgcaa 9943168  T
Q  146 ctcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacat 206  Q
    ||| || |||||||| | | |||| || |||||||||||||||||||| ||| ||| ||||    
T  9943167 ctccataggtgtttttagtatttt-tattgagaaatcatgtaaatcggaaaaacaagacat 9943108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 26512910 - 26512753
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt- 130  Q
    |||||||||||||| |||| ||| |||| ||||||||||||||  | ||||| | ||  |||||||||||||| |||||| || |||||||||||||||     
T  26512910 tttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcactttta 26512811  T
Q  131 atctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    | ||| |||||||||| | || | |||||||| |  ||  |||||||||||||||||||    
T  26512810 acctagatcatgcaacccgatagctgttttgagt-cttcctagtgagaaatcatgtaaa 26512753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 26518026 - 26517869
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt- 130  Q
    |||||||||||||| |||| ||| |||| ||||||||||||||  | ||||| | ||  |||||||||||||| |||||| || |||||||||||||||     
T  26518026 tttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcactttta 26517927  T
Q  131 atctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    | ||| |||||||||| | || | |||||||| |  ||  |||||||||||||||||||    
T  26517926 acctagatcatgcaacccgatagctgttttgagt-cttcctagtgagaaatcatgtaaa 26517869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 32930605 - 32930419
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||| |||| ||| |||| ||||||||||||||  | ||||| ||||  |||||| ||||||  ||  || || || |||||||||||||    
T  32930605 tttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacattttgttttgtttccataagagtcgttttaattcactttta 32930506  T
Q  132 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    || | || ||||||| |  || | |||||||| | |||| |||||||||||||||||||| |||||| ||| ||||||| || |||||    
T  32930505 tccttaaacatgcaatttgatagatgttttgagtctttt-tagtgagaaatcatgtaaattggcaaaacaagacatcacatggaggat 32930419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 9396735 - 9396553
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||||||||||||||||||| ||| |||| ||||||||||  ||  | |||  |||||  | |||||||||||| |||       | ||||||||  |    
T  9396735 ttctttgcatttgaaggaaaataagaggtcatttagaggagtaatcaatggttataggaacatcttgtattgttttcattt------tggtaattcatct 9396642  T
Q  129 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||| |||||||||||||||  ||  ||||||||| | |||| |||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  9396641 ttattctaaatcatgcaacttcatatgtgttttgagtctttt-tagtgagaaatcat-taaatcggcaaaacaagacatcacgtgaaggat 9396553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 12972520 - 12972335
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||| || | ||| |||| ||||||||||||||  |  |||  ||||  |||||||||| ||| |||| |  | |||||||||| ||    
T  12972520 ttctttgcatttgaaggcaactaagaggtcatttagaggagttgtcaatgttttacggaaaattttgtattgctttcattcaagacgttgtaattcagtt 12972421  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
     |||| ||||||||||||||  ||  ||||||||| | |||| ||| ||||||||||||||||| | ||| ||| |||| |||||||    
T  12972420 gtatcctaaatcatgcaacttcatacgtgttttgagtctttt-tagggagaaatcatgtaaatcagaaaaccaagacataacgtgaa 12972335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 15574904 - 15575093
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||  |||| ||| |  | |||||||| |||||  | ||||||||||  | || ||||||||| | || | || |||||||| | ||    
T  15574904 ttctttgcatttgaagacaaataagatgagatttagaggaattgtcaat-gtttgaggaacatgttatattgttttcactctagtcgttgtaatttagtt 15575002  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||| | || |||||||||||| || ||| |||| | |||||||||| ||| ||||||||||||   |||||||| ||||||||||||||||    
T  15575003 ttagcctagatcatgcaactccataggttttttaagtgttttgtagcgaggaatcatgtaaattaacaaatcaagacatcacgtgaaggat 15575093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 16387352 - 16387213
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatctaaa---tcatgcaactcaattggtgt 157  Q
    ||||| ||||||||  | ||||||||||||| |||||||||||||||||||  | |||||||||||  |||||| ||   |||||||||||             
T  16387352 ttagatgagttgtcaatggtttgaggaatttattgtattgtttttattcgagccgttgtaattcaccgttatcttaaatctcatgcaactc--------- 16387262  T
Q  158 tttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacat 206  Q
    | | |||||||| |||| |||||||||||||||||||||||||| ||||    
T  16387261 tataaatgttttatagtaagaaatcatgtaaatcggcaaatcaagacat 16387213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 15998599 - 15998676
Alignment:
Q  137 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||||  || |||||||||| |||||||||||||| ||||||||||||   |||||||| |||||| |||||    
T  15998599 atcatgcaacttcataggtgttttgagtgttttgtagtgaggaatcatgtaaatgaccaaatcaagacatcatgtgaa 15998676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 33638498 - 33638451
Alignment:
Q  171 tagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  33638498 tagtgagaaatcatgtaaatcggcaaaacaatatatcaagtgaaggat 33638451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 24617533 - 24617677
Alignment:
Q  71 tgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgtttt 169  Q
    ||||| ||||||||  ||| ||| |||||||||  |||||| || | |||||||| ||||||| ||||||||| ||||  ||  ||||||||| | ||||    
T  24617533 tgtcgattgtttgacaaatatttagtattgttta-attcgagtcgtcgtaattcagttttatcctaaatcatgtaacttcatgagtgttttgagtctttt 24617631  T
Q  170 gtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaagg 216  Q
     ||||||||||| ||||||||| ||||| ||| |||||| |||||||    
T  24617632 -tagtgagaaattatgtaaatcagcaaaacaagacatcatgtgaagg 24617677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 13759555 - 13759467
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta-tctaaatcatgcaactc 148  Q
    ||||||||||||||  | ||||||||||  | ||| |||||||| | ||||||| |||||||||| ||||| |||| ||||||||||||    
T  13759555 ttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcgaatcgttgtaattcaattttattctatatcatgcaactc 13759467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 13835580 - 13835680
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||| ||| |||||  |||| |||||||| | |||||||||||| || ||||||||||  ||| || ||||||||||| || ||| | ||||||||||    
T  13835580 ttcttttcatatgaagacaaataagaagtcattaagaggagttgtccttggtttgaggaacatttggtgttgtttttatttgattcactataattcactt 13835679  T
Q  129 t 129  Q
    |    
T  13835680 t 13835680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 22262456 - 22262510
Alignment:
Q  164 tgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||||||| | |||||||||| |||||||||| |||||| |||| ||||    
T  22262456 tgttttgtagtgaggactcatgtaaattggcaaatcaaaacatcatgtgagggat 22262510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 189
Target Start/End: Complemental strand, 14924553 - 14924393
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    ||||||||||||||||| |||| | | || | ||||||||||||||  | ||||||||||   ||| |||  | || |||||| || |||||  ||||||    
T  14924553 ttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaacaatttatatcttattcattcgagtcgttgtacctcactt 14924454  T
Q  129 tta-tctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 189  Q
    ||| |||||||||||||| |  || || ||||||| | ||||  ||||||||||||||||||    
T  14924453 ttattctaaatcatgcaattatataggggttttgagtctttt-aagtgagaaatcatgtaaa 14924393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 16439501 - 16439616
Alignment:
Q  92 tttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 190  Q
    ||||||||||||||||| || || || ||||| ||||||||| ||||| ||||||||  |   ||||||||| | |||| ||||||||||||||||||||    
T  16439501 tttgtattgtttttatt-gagtcgttataattaacttttatcctaaataatgcaacttcacatgtgttttgagtctttt-tagtgagaaatcatgtaaat 16439598  T
Q  191 cggcaaatcaatacatca 208  Q
    | | ||| ||| ||||||    
T  16439599 cagaaaaacaagacatca 16439616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 13830938 - 13830870
Alignment:
Q  61 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttt 129  Q
    ||||| |||||||| || ||||||||||  ||| || ||||||||||| || ||| |||||||||||||    
T  13830938 ttagatgagttgtccttcgtttgaggaacatttggtgttgtttttatttgattcagtgtaattcacttt 13830870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 26499895 - 26499788
Alignment:
Q  116 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaa 214  Q
    |||||||||  ||||||| ||||||||| || |  || |||||| ||| |||||| ||||||||||||||| ||||||||||| ||| | | ||||||||    
T  26499895 ttgtaattcgattttatcctaaatcatgtaatttcataggtgttatgagtgtttt-tagtgagaaatcatgcaaatcggcaaaacaagataccacgtgaa 26499797  T
Q  215 ggattgagg 223  Q
     ||| ||||    
T  26499796 agatcgagg 26499788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 1747 - 1926
Alignment:
Q  12 ctatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcga 111  Q
    ||||| ||||||  |||||||||||||||||||||| ||||||||||||||| |||| ||||| || |||||| |||  ||||||||||||||  |||||    
T  1747 ctatgtttttagcctaattctttgcatttgaaggaatattagaagtcaattataggatttgtcattggtttgaagaaccttttgtattgttttcgttcga 1846  T
Q  112 atcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
      | ||||||||||| |||||| | ||||||||||||  | | ||||||||  ||||||||| | ||||||||||||||||    
T  1847 gccgttgtaattcac-tttatctttaatcatgcaacttcacttgtgttttgggtgttttgtaattagaaatcatgtaaatc 1926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 11830 - 11640
Alignment:
Q  32 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 131  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||  |  ||||| ||| ||||||||| ||||| ||| ||||| |||||||||| ||||     
T  11830 tttgcatttgaaggcaaaatagaagtcatttagaggagttgtcaatgatttgatgaactttttgtatagttttcatttgaatcgttgtaattcagttttg 11731  T
Q  132 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgag 222  Q
    | |||||||||||||||  || |||||||||| | ||||   ||  |||||||||||||||| |||| ||| |||||| || ||||||||||    
T  11730 tcctaaatcatgcaactacatgggtgttttgagtctttt-ccgtacgaaatcatgtaaatcgacaaaacaagacatcaagttaaggattgag 11640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 228296 - 228132
Alignment:
Q  53 gaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaat 151  Q
    ||||||||||||||||||| || ||  |||| ||||  ||||  |||||||| |||||| || |||||||||| ||||||| ||||||||||||| | |     
T  228296 gaagtcaattagaggagttttcattgatttgtggaacattttaaattgttttcattcgagtcgttgtaattcatttttatcataaatcatgcaaccctaa 228197  T
Q  152 tggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
      ||||| |  ||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  228196 aagtgttgt--atgttttatagtgagaaatcatgtaaatcgacaaatcaagacatcacgtgaaggat 228132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 58724 - 58844
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||  | |||||||||| ||||||||||||||| |||||  |||||||||| ||  |    
T  58724 ttctatgcatttgaaggcaaattagaagtcaatcagaggagttgtcaatggtttgaggaactttttgtattgttttcattcgggtcattgtaatccaggt 58823  T
Q  129 ttat-ctaaatcatgcaactc 148  Q
    |||| || |||||||||||||    
T  58824 ttatcctgaatcatgcaactc 58844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 13116 - 13017
Alignment:
Q  120 aattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    |||||||||||||| ||||| ||||||||| |  |||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||    
T  13116 aattcacttttatcctaaattatgcaactccacaggtgttttgagtgttttgtagtgaggaatcatgtaaatcgacaaatcaagacatcacatgaaggat 13017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 206
Target Start/End: Complemental strand, 8781 - 8667
Alignment:
Q  93 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 191  Q
    |||||||||||| | |||| |  | |||||||||||||||| |||||  |||||||| ||   ||||||||||||||||||||||| |||||||||||||    
T  8781 ttgtattgttttcactcgacttgtagtaattcacttttatcctaaattgtgcaactccatatatgttttgaatgttttgtagtgaggaatcatgtaaatc 8682  T
Q  192 ggcaaatcaatacat 206  Q
    | |||||||| ||||    
T  8681 gacaaatcaagacat 8667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 27007 - 26905
Alignment:
Q  113 tcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgt 211  Q
    ||||||||||| ||||||||| |||||||| |||||  || |||||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||||    
T  27007 tcattgtaatttacttttatcctaaatcatacaactacataggtgttttgagtgtttagtagtgagaaatcatgtaaatcgacaaattaagacatcacgt 26908  T
Q  212 gaa 214  Q
    |||    
T  26907 gaa 26905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 21426 - 21566
Alignment:
Q  79 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgag 177  Q
    |||||||||| || |||||||||||| | |||| || ||||||||||||||||| |||||||||||||||  ||   |||||||  ||||||| ||||||    
T  21426 gtttgaggaacttattgtattgttttcactcgagtcgttgtaattcacttttatcctaaatcatgcaacttcataattgttttgggtgttttgcagtgag 21525  T
Q  178 aaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
     |||||||||||||| |||| ||| |||| || ||||||||    
T  21526 gaatcatgtaaatcgacaaaccaagacattacatgaaggat 21566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 6259 - 6364
Alignment:
Q  113 tcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaa-tcatgtaaatcggcaaatcaatacatcacg 210  Q
    ||||||||||| ||||||||| || | | |||| |||||  |||||| | | ||||||||| ||||||| |||||||||||| |||||||| ||||||||    
T  6259 tcattgtaatttacttttatcctagagcttgcacctcaa--ggtgttataagtgttttgtattgagaaaatcatgtaaatcgacaaatcaagacatcacg 6356  T
Q  211 tgaaggat 218  Q
    ||||||||    
T  6357 tgaaggat 6364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 1422 - 1586
Alignment:
Q  29 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 128  Q
    |||||| ||| | ||||||||| ||| |||| ||||||||||||||  |  ||||||||   |||||||||||||| |||||| ||||| ||||||||||    
T  1422 ttcttttcatcttaaggaaaataagaggtcatttagaggagttgtcaatattttgaggagcattttgtattgttttcattcgattcattttaattcactt 1521  T
Q  129 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 193  Q
    ||||| | |||||||||||||||  | ||||| || | |||| || ||| ||||||||||||||||    
T  1522 ttatcattaatcatgcaactcaaaagatgtttcgagtctttttta-tgaaaaatcatgtaaatcgg 1586  T

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Target: scaffold1026 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 1994 - 1780
Alignment:
Q  2 atgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgt 101  Q
    |||||||| |||||| |||||||    |||||||||||| ||||||  |||||| | ||||||| ||||||||  |  ||| ||||| ||||||||||||    
T  1994 atgtttttaactatgtttttagttattttctttgcatttaaaggaa--ttagaacttaattagatgagttgtcaatgatttaaggaaatttttgtattgt 1897  T
Q  102 ttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatca 200  Q
    ||| |||| | ||||||||||  | |||||| |||||| ||||||||   | |||  ||||||| |||| ||||||||||||||| |||| |||||| ||    
T  1896 tttcattctagtcattgtaatctagttttatcctaaattatgcaactttgtaggttatttgaatctttt-tagtgagaaatcatggaaattggcaaaaca 1798  T
Q  201 atacatcacgtgaaggat 218  Q
    | | |||| |||||||||    
T  1797 agagatcatgtgaaggat 1780  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 447064 - 447145
Alignment:
Q  137 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggat 218  Q
    ||||||| |||| || || ||||||| ||||||| |||||| |||||||||||||   ||||||| |||||| |||||||||    
T  447064 atcatgccactccataggcgttttgagtgttttgaagtgaggaatcatgtaaatcattaaatcaagacatcatgtgaaggat 447145  T

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Target: scaffold0650 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 5765 - 5710
Alignment:
Q  168 ttgtagtgagaaatcatgtaaatcggcaaatcaatacatcacgtgaaggattgagg 223  Q
    ||||||||||||||||||||||| | ||||| || ||||||| |||||||| ||||    
T  5765 ttgtagtgagaaatcatgtaaattgacaaataaagacatcacatgaaggatcgagg 5710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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