View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6337_low_12 (Length: 215)
Name: NF6337_low_12
Description: NF6337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6337_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 13942748 - 13942942
Alignment:
| Q |
13 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13942748 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
13942847 |
T |
|
| Q |
113 |
tttgcctgcgactttactagatgttgagggaagattcgatgaggttgatgaccatgagttgatagttaatgatgccatggacaaggatgatgatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13942848 |
tttgcctgcgactttactagatgttgagggaagatttgatgaggttgatgaccatgagttgatagttaatgatgccatggacaaggatgatgatg |
13942942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 15254549 - 15254355
Alignment:
| Q |
13 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15254549 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
15254450 |
T |
|
| Q |
113 |
tttgcctgcgactttactagatgttgagggaagattcgatgaggttgatgaccatgagttgatagttaatgatgccatggacaaggatgatgatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15254449 |
tttgcctgcgactttactagatgttgagggaagatttgatgaggttgatgaccatgagttgatagttaatgattccatggacaaggatgatgatg |
15254355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 15719793 - 15719987
Alignment:
| Q |
13 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15719793 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
15719892 |
T |
|
| Q |
113 |
tttgcctgcgactttactagatgttgagggaagattcgatgaggttgatgaccatgagttgatagttaatgatgccatggacaaggatgatgatg |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15719893 |
tttgcctgcgaatttactagatgttgagggaagatttgatgaggttgatgaccatgagttgatagttaatgatgacatggacaaggatgatgatg |
15719987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 15215233 - 15215136
Alignment:
| Q |
110 |
agatttgcctgcgactttactagatgttgagggaagattcgatgaggttgatgaccatgagttgatagttaatgatgccatggacaaggatgatgatg |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15215233 |
agatttgcctgtgactttactagatgttgagggaagatttgatgaggttgatgaccatgagttgatagttaatgattccatggacaaggatgatgatg |
15215136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 17002881 - 17003075
Alignment:
| Q |
13 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
17002881 |
caaaggcaagaggtgtgatcgaggatcaacaagttgaagactctgcatatcaagaggattttctggatcaaaatattgctggcatctcagctgacataga |
17002980 |
T |
|
| Q |
113 |
tttgcctgcgactttactagatgttgagggaagattcgatgaggttgatgaccatgagttgatagttaatgatgccatggacaaggatgatgatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17002981 |
tttgcctgcgactttactagatgttgagggaagatttgatgaggttgatgaccatgagttgatagttaatgatcccatggacaaggatgatgatg |
17003075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 21574675 - 21574869
Alignment:
| Q |
13 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21574675 |
caaaggcaagaggtgtgatcgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggctggcatctcagctgacataga |
21574774 |
T |
|
| Q |
113 |
tttgcctgcgactttactagatgttgagggaagattcgatgaggttgatgaccatgagttgatagttaatgatgccatggacaaggatgatgatg |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21574775 |
tttgcctgcaactttactagatgttgagggaagatttgatgaggttgatgaccatgagtttctagttaatgatgccatggacaaggatgatgatg |
21574869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University