View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6337_low_2 (Length: 475)

Name: NF6337_low_2
Description: NF6337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6337_low_2
NF6337_low_2
[»] chr8 (3 HSPs)
chr8 (1-94)||(14457646-14457739)
chr8 (170-230)||(14457815-14457875)
chr8 (289-346)||(14457959-14458016)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 14457646 - 14457739
Alignment:
Q  1 ttcagctaggtgatcgaaacctacggttagttacttcgattttctcgcttaatcgttctgcattttcgatttcatgcaaagacgctttgttcaa 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14457646 ttcagctaggtgatcgaaacctacggttagttacttcgattttctcgcttaatcgttctgcattttcgatttcatgcaaagacgctttgttcaa 14457739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 14457815 - 14457875
Alignment:
Q  170 agctagctgagacgcgttgaatttttcagaaattaatctctgaggtaagaaacaggtttaa 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14457815 agctagctgagacgcgttgaatttttcagaaattaatctctgaggtaagaaacaggtttaa 14457875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 14457959 - 14458016
Alignment:
Q  289 acttgttctattatcgttgaaaatcaacattttatggaaaaatttcaagttcatgcac 346  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14457959 acttgttctattttcgttgaaaatcaacattttatggaaaaatttcaagttcatgcac 14458016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University