View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6337_low_3 (Length: 354)
Name: NF6337_low_3
Description: NF6337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6337_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 37997523 - 37997203
Alignment:
| Q |
19 |
gaagacaaagttatttaaaaaacacaatatttgactttgttgaaagtgacacttatgtagttattgaaacttaccatcagtaagttagtaaaactagtga |
118 |
Q |
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| T |
37997523 |
gaagacaaagttatttaaaaaacacaatatttgactttgttgaaagtgacacttatgtagttattgaaacttaccatcagtaagttagtaaaactagtga |
37997424 |
T |
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| Q |
119 |
catcattgatccctacaggcacacttgtgctaggcccctcatgttgcacttatctttgagaatcccttaagtcacctgttttcctctttttgggagttgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37997423 |
catcattgatccctacaggcacacttgtgctaggtccctcatgttgcacttgtctttgagaatcccttaagtcacctgttttcctttttttgggagttgg |
37997324 |
T |
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| Q |
219 |
ccatttaccctcctctgatcttggttctgcgtataaacacataaatgtgaacttctttatttcactaaaattaatattgaaattcaatattttgataatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37997323 |
ccatttaccctcctctgatcttggttctgcgtataaacacataaatgtgaacttctttatttcactaaaattaatattgaaattcaatattttgataatt |
37997224 |
T |
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| Q |
319 |
taatttgtgaagcacttgaac |
339 |
Q |
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||||||||||||||||||||| |
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| T |
37997223 |
taatttgtgaagcacttgaac |
37997203 |
T |
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