View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6337_low_4 (Length: 327)
Name: NF6337_low_4
Description: NF6337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6337_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 42072062 - 42071871
Alignment:
| Q |
15 |
caaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattgacactgttagtctgac |
114 |
Q |
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| T |
42072062 |
caaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattgacactgttagtctgac |
42071963 |
T |
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| Q |
115 |
ttgctctacaggagaatcatccacttctgtgtcatcatctgcatcacacacatacaacaatgtaaacaactatgaagcattgacacagacac |
206 |
Q |
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| T |
42071962 |
ttgctctataggagaatcatccacttctgtgtcatcatctgcatcacacacatacaacaatgtaaacaactatgaagcattgacacagacac |
42071871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 42055860 - 42055715
Alignment:
| Q |
15 |
caaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattgacactgttagtctgac |
114 |
Q |
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| T |
42055860 |
caaaggcaaggacaatgcaacatgccaaaccaataatccatgtcctaaatgtcagtgctggttgtgttgggtcgtctgttgttgacactgttagtctgac |
42055761 |
T |
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| Q |
115 |
ttgctctacaggagaatcatccacttctgtgtcatcatctgcatca |
160 |
Q |
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| T |
42055760 |
ctgctctattggagaatcatccacttctgtgtcatcatctgcatca |
42055715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 42081010 - 42080865
Alignment:
| Q |
15 |
caaaggcaagggcaatgcaagacacaaaaccaataacccatgtcctaaatgttagtgctggttgtgtagggtcgtctgttattgacactgttagtctgac |
114 |
Q |
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| T |
42081010 |
caaaggcaaggacaatgcaacatgccaaaccaataatccatgtcctaaatgtcagtgctggttgtgttgggtcgtctgttgttgacactgttagtctgac |
42080911 |
T |
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| Q |
115 |
ttgctctacaggagaatcatccacttctgtgtcatcatctgcatca |
160 |
Q |
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| T |
42080910 |
ctgctctattggagaatcatccacttctgtgtcatcatctgcatca |
42080865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 42071872 - 42071790
Alignment:
| Q |
228 |
accgataataataaattgagaaaattgattaattgaatgtaaccatatgttccatttgaacattagacatgtatgtctttgat |
310 |
Q |
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| T |
42071872 |
accgataataataaattgagaaaattgattaattgaatgtaaccatatgttccatttgaacattagacatgtatgtctttgat |
42071790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 42080768 - 42080716
Alignment:
| Q |
232 |
ataataataaattgagaaaattgattaattgaatgtaaccatatgttccattt |
284 |
Q |
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| T |
42080768 |
ataatagtatattgagaaaattgaaaaattgaatgtaaccatatgtgccattt |
42080716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 9483390 - 9483433
Alignment:
| Q |
234 |
aataataaattgagaaaattgattaattgaatgtaaccatatgt |
277 |
Q |
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| T |
9483390 |
aataataatttgagaaaatagaataattgaatgtaaccatatgt |
9483433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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