View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6338_high_4 (Length: 251)
Name: NF6338_high_4
Description: NF6338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6338_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 38762730 - 38762491
Alignment:
| Q |
12 |
aagaagaaggtaatcactgggagacagttagtagtggcagcggccaaagttgcagaagtgtttattagagcaataccatatatgtccaaactcgatgtga |
111 |
Q |
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| T |
38762730 |
aagaagaaggtaatcactgggagacagttagtagtggcagcggccaaagttgcagaagtgtttattagagcaataccatatatgtccaaactcgatgtga |
38762631 |
T |
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| Q |
112 |
tcctgatcatagatcaacaaatttcattatatattatatagtttttgttttggtgtgtaaaagaagtggtaaacaccgactctcacatataactgtgagg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
38762630 |
tcctgatcatagatcaacaaatttcattatatattatatagtttttgttttggtgtgtaaaagaagtggtaaacacagactctcacatataactgcaagg |
38762531 |
T |
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| Q |
212 |
ttcaagttcaaactcaagtaaagatgttcaaccaacaact |
251 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |
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| T |
38762530 |
ttcaagttcaaactcgagtaaagatgttcaaccaacaact |
38762491 |
T |
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