View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6338_low_1 (Length: 858)
Name: NF6338_low_1
Description: NF6338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6338_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 20 - 848
Target Start/End: Original strand, 51836458 - 51837281
Alignment:
| Q |
20 |
taggtgatcattgaattcgacaaa-ctctgataccaatgtttgggaggctaaaagaaaaggggcgaatcattccaaaaataagaccacggatgctatgtg |
118 |
Q |
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||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51836458 |
taggtgatctttgaattcgacaaaactctgataccaatatttgggaggttaaaagaaaaggggcgaatcattccaaaaataagaccacgaatgctatgtg |
51836557 |
T |
|
| Q |
119 |
cacattatatatacttgtaccaaccgcaaacaattagttaactgaaactcgatagctagttagccacgtcgtaagcaaacacacttacgcaaccatgtgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51836558 |
cacattatatatacttgtaccaaccgcaaacaattagttaactgaaactcgatagctagttagccacgtcgtaagcaaacacacttacgcaaccatgtgc |
51836657 |
T |
|
| Q |
219 |
atatatggctgaatcagattctacagtactggtgnnnnnnnnnnnnnnnnggttatggccaagcagattaatgtggtgtattttgattagttattagtcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51836658 |
atatatggctgaatcagattctacagtactggtgaaaaaacaaaataaaaggttatggccaagcagattaatgtggtgtattttgattagttattagtcc |
51836757 |
T |
|
| Q |
319 |
cttagttgaattttaggaccactcaaggctagaagatgagcgcatatatcatatgcatatgcatgtatctttcaagaaattaattcaacaaagctattgt |
418 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51836758 |
cttatttgaattttaggaccactcaaggctagaagatgagcgcatatatcatatgcatatgcatgtatctttcaagaaattaattcaacaaagctattgt |
51836857 |
T |
|
| Q |
419 |
ttttacaaaatcnnnnnnngcttatatactaacaggaatataaattattgttttttaaataaatgttggtagttggtttgttagaatagtatttttactc |
518 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51836858 |
ttttacagaatcaaaaaaagcttatatactaacaggaatataaattattgttttttaaataaatgttggtagttggtttgttaaaatagtatttttactc |
51836957 |
T |
|
| Q |
519 |
tttgttcatatttaaacctacgacctcaaactcatattcttttagttcaaatcag--------ttgaactatctaatccctaacaagaaaatatatttac |
610 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
51836958 |
tttgttcagatttaaacctacgacctcaaactcatattcttttagttcaaatcagttgaacacttgaactatctaacccctaacaag------------- |
51837044 |
T |
|
| Q |
611 |
aacaaacagggagataatgataccattgtggttgcatatgagagagttaaggagtagagcacaggcaaaaaggagtgttgtatgattgaattggcaagcg |
710 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51837045 |
---aaacagggaaataatgataccattgtggttgcatatgagagagttaaggagtagagcacaggcaaaaaggagtgttgtatgattgaattggcaagcg |
51837141 |
T |
|
| Q |
711 |
a-aaaaatttt-tgagctaaatcagcagttgtgagcatcagtatcccacaatagacccaagcagcattcaaacgatttctttccccttttcattttctta |
808 |
Q |
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| T |
51837142 |
acaaaaattttatgagcgaaatcagcagttgtgagcatcagtatcccacaatagacccaagcagcattcaaacgatttctttccccttttcattttctta |
51837241 |
T |
|
| Q |
809 |
caaacaaacatttgctagattttgtttgtattgatgatgt |
848 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
51837242 |
caaacaaacatttgctagattttgtttgtattgatgatgt |
51837281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 27272780 - 27272746
Alignment:
| Q |
20 |
taggtgatcattgaattcgacaaactctgatacca |
54 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
27272780 |
taggtgatcattgaattcgacagactctgatacca |
27272746 |
T |
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