View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_high_10 (Length: 525)

Name: NF6339_high_10
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_high_10
NF6339_high_10
[»] chr2 (12 HSPs)
chr2 (16-515)||(43223910-43224409)
chr2 (189-515)||(41654489-41654815)
chr2 (189-433)||(43213348-43213592)
chr2 (189-515)||(41649937-41650275)
chr2 (187-515)||(43227882-43228225)
chr2 (185-515)||(43206370-43206709)
chr2 (16-174)||(41654905-41655066)
chr2 (16-89)||(41650635-41650708)
chr2 (16-90)||(43213046-43213120)
chr2 (16-83)||(43206111-43206178)
chr2 (16-89)||(43227443-43227516)
chr2 (457-514)||(43213628-43213685)
[»] chr8 (4 HSPs)
chr8 (200-409)||(5073627-5073836)
chr8 (16-87)||(5072737-5072808)
chr8 (203-237)||(31839458-31839492)
chr8 (203-240)||(26262851-26262888)


Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Original strand, 43223910 - 43224409
Alignment:
Q  16 catcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaaccnnnnnnn-tcatcaatgaaatata 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  43223910 catcatggccacatgcatgcatctttccaggcactttactcttatgctcccactccaccaattcctaaggttaaccaaaaaaaatcatcaatgaaatata 43224009  T
Q  115 gatgaaacagtatcctaatataaaatccaagataatatatggttgaaaaccaaaacactcagnnnnnnntgtagacctgcatgagaagagcatccatgtc 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  43224010 gatgaaacagtatcctaataaaaaatccaagataatatatggttgaaaaccaaaacactcagaaaaaa-tgtagacctgcatgagaagagcatccatgtc 43224108  T
Q  215 agctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtttatattgaacacttaattcatccaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43224109 agctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttatattgaacacctaattcatccaat 43224208  T
Q  315 tctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43224209 tctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgag 43224308  T
Q  415 gttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaacatgatgat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43224309 gttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaacatgatgat 43224408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 189 - 515
Target Start/End: Complemental strand, 41654815 - 41654489
Alignment:
Q  189 acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt 288  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41654815 acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt 41654716  T
Q  289 tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat 388  Q
    |||||  |||||  ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41654715 tatatgtaacacccaattcatccaattttgttcttataagcttactggtctcaaattcttcataaccaagttcaggattctcatgaatcttcctccttat 41654616  T
Q  389 atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggtgtagca 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  41654615 atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaagttggggattgcatttgaactggtggaagagtctgagaagattggtgtagca 41654516  T
Q  489 gataaaaaggaaatgaacatgatgatg 515  Q
    ||||||||||||||||| |||| ||||    
T  41654515 gataaaaaggaaatgaaaatgacgatg 41654489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 189 - 433
Target Start/End: Original strand, 43213348 - 43213592
Alignment:
Q  189 acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt 288  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  43213348 acctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgtt 43213447  T
Q  289 tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat 388  Q
    ||||| | |||| ||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  43213448 tatatgggacacctaattcatctaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttat 43213547  T
Q  389 atcaaccatccaatcaaaaacttgaggttccttggctaattccag 433  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  43213548 atcaaccatccaatcaaaaacttgaggctctttggctaattccag 43213592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 189 - 515
Target Start/End: Complemental strand, 41650275 - 41649937
Alignment:
Q  189 acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt 288  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41650275 acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt 41650176  T
Q  289 tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat 388  Q
    ||||| | |||| |||||||||||||| ||||| |||||||||||| || | |||||| | |||||  |||||||||||||||||||| || ||||||||    
T  41650175 tatatgggacacctaattcatccaattttgttcgtataagcttactagttttaaattcttgataactcagttcaggattctcatgaatttttctccttat 41650076  T
Q  389 atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaa---ctggaggaagaatctgagaag 476  Q
    |||||||||  |||||||||||||||||||||||| ||| |  || || || |||||||         | ||||||    ||||||| ||||||||||||    
T  41650075 atcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtcatttgaagtggtggaggaggaatctgagaag 41649976  T
Q  477 attggtgtagcagataaaaaggaaatgaacatgatgatg 515  Q
    |||||||| |||||| ||||| ||||||| |||||||||    
T  41649975 attggtgttgcagatgaaaagaaaatgaaaatgatgatg 41649937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 187 - 515
Target Start/End: Original strand, 43227882 - 43228225
Alignment:
Q  187 agacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatg 286  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  43227882 agacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatg 43227981  T
Q  287 tttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctcctt 386  Q
    ||||||||||||||  || |||||||||| |||||||||||||||||| ||||||||||| | |||||  |||||||||||||||||||| || ||||||    
T  43227982 tttatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctcctt 43228081  T
Q  387 atatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaactgg------aggaagaatctg 471  Q
    |||  ||||||||| |||||||||| ||| || || ||||| || || || || |||||||         | |||||| |||      |||| |||||||    
T  43228082 atagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggtggaggaggaggaatctg 43228181  T
Q  472 agaagattggtgtagcagataaaaaggaaatgaacatgatgatg 515  Q
    ||||||||| ||| |||||||||||| ||||||| |||||||||    
T  43228182 agaagattgatgttgcagataaaaagaaaatgaaaatgatgatg 43228225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 185 - 515
Target Start/End: Original strand, 43206370 - 43206709
Alignment:
Q  185 gtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactgga 284  Q
    ||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  43206370 gtagacctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactgga 43206469  T
Q  285 tgtttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctcc 384  Q
    ||||||||||||||||  || |||||||||| |||||||||||||||||| ||||||||||| | |||||  |||||||||||||||||||| || ||||    
T  43206470 tgtttatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctcc 43206569  T
Q  385 ttatatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaactggaggaagaatctgagaa 475  Q
    |||||  ||||||||| |||||||||| ||| || || ||||| || || || || |||||||         | |||||| |||| ||  | ||||||||    
T  43206570 ttatagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggaagagaagtctgagaa 43206669  T
Q  476 gattggtgtagcagataaaaaggaaatgaacatgatgatg 515  Q
    || |||||| ||||| |||||| ||||||| |||||||||    
T  43206670 gactggtgttgcagagaaaaagaaaatgaaaatgatgatg 43206709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 41655066 - 41654905
Alignment:
Q  16 catcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaacc--nnnnnnntcatcaatgaaatat 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  41655066 catcatggccacatgcatgcatctttccaggcactttactcttatgctcccactccaccaattcctaaggttaaccaaaaaaaattcatcaatgaaatat 41654967  T
Q  114 agatgaaacag--tatcctaatataaaatccaagataatatatggttgaaaaccaaaacactc 174  Q
    |||||||||||  ||||||||||||||||  | || ||||||| ||| |||||||||||||||    
T  41654966 agatgaaacagtatatcctaatataaaatatatgacaatatat-gtttaaaaccaaaacactc 41654905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 41650708 - 41650635
Alignment:
Q  16 catcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaa 89  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||    
T  41650708 catcatgaccacatgcatgcatctttccaggtactttactcttatgctcccactccaccaattcctaatgttaa 41650635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 43213046 - 43213120
Alignment:
Q  16 catcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaac 90  Q
    ||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  43213046 catcatgaccacatccatgcatctttccaggtactttactcttatgctcccactccaccaattcctgaagttaac 43213120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 43206111 - 43206178
Alignment:
Q  16 catcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaa 83  Q
    ||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||    
T  43206111 catcatgaccacatgcatgcatctttccaggtactttacttttatgctcccactccaccatttcctaa 43206178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 43227443 - 43227516
Alignment:
Q  16 catcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaa 89  Q
    ||||||| ||||||||||||||||||||||| ||||  || ||||||||||| |||| |||||||||| |||||    
T  43227443 catcatgaccacatgcatgcatctttccaggtactttgcttttatgctcccattccaacaattcctaatgttaa 43227516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 514
Target Start/End: Original strand, 43213628 - 43213685
Alignment:
Q  457 tggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaacatgatgat 514  Q
    ||||||| ||||||||||| || ||||| ||| |||||||| ||||||| ||||||||    
T  43213628 tggaggaggaatctgagaaaataggtgttgcacataaaaagaaaatgaaaatgatgat 43213685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 200 - 409
Target Start/End: Original strand, 5073627 - 5073836
Alignment:
Q  200 aagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtttatattgaaca 299  Q
    |||||||||||| |||||||| | ||| ||||||||||  |  |||||||||||| || |||| ||||| || | ||||||||||| ||||||  ||| |    
T  5073627 aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttatagggaata 5073726  T
Q  300 cttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatcc 399  Q
    || | || |||||||||||||||||| |  | ||| |||||||||||||||||||| | ||| |||||||||||||| ||||| || ||||  | |||||    
T  5073727 ctcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgatattgatcatcc 5073826  T
Q  400 aatcaaaaac 409  Q
    ||||| ||||    
T  5073827 aatcataaac 5073836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 5072737 - 5072808
Alignment:
Q  16 catcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggtt 87  Q
    ||||||| ||||| ||||||||||||||||| || | |||| | |||||||||||||||| |||||||||||    
T  5072737 catcatgaccacacgcatgcatctttccaggtaccttactcctgtgctcccactccaccatttcctaaggtt 5072808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 31839458 - 31839492
Alignment:
Q  203 agcatccatgtcagctctaagagcgacaaaaggag 237  Q
    |||||||||||||||||||||||| ||||||||||    
T  31839458 agcatccatgtcagctctaagagcaacaaaaggag 31839492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 26262888 - 26262851
Alignment:
Q  203 agcatccatgtcagctctaagagcgacaaaaggaggaa 240  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  26262888 agcatccatgtcagctctaagagcaacaaatggaggaa 26262851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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