View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_high_20 (Length: 439)

Name: NF6339_high_20
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_high_20
NF6339_high_20
[»] chr2 (15 HSPs)
chr2 (1-288)||(23853583-23853870)
chr2 (352-416)||(23853455-23853519)
chr2 (185-287)||(19577774-19577875)
chr2 (208-288)||(28603933-28604013)
chr2 (208-288)||(44630617-44630697)
chr2 (43-123)||(31327431-31327511)
chr2 (43-123)||(31334152-31334232)
chr2 (177-276)||(38592056-38592155)
chr2 (43-111)||(42926006-42926074)
chr2 (203-288)||(15446452-15446537)
chr2 (51-120)||(28603786-28603855)
chr2 (224-288)||(31328925-31328989)
chr2 (224-288)||(31335646-31335710)
chr2 (159-287)||(40846751-40846879)
chr2 (159-276)||(32080175-32080292)
[»] chr8 (3 HSPs)
chr8 (43-285)||(7002328-7002571)
chr8 (43-288)||(22714166-22714412)
chr8 (206-287)||(1910117-1910198)
[»] chr4 (11 HSPs)
chr4 (174-288)||(16948814-16948928)
chr4 (43-139)||(8029663-8029759)
chr4 (208-288)||(19102813-19102893)
chr4 (160-287)||(33468166-33468292)
chr4 (43-178)||(19102659-19102794)
chr4 (159-287)||(39216267-39216395)
chr4 (208-288)||(47244977-47245057)
chr4 (208-287)||(12875251-12875330)
chr4 (174-277)||(16955137-16955240)
chr4 (43-122)||(19107289-19107368)
chr4 (160-287)||(29349376-29349502)
[»] chr7 (9 HSPs)
chr7 (203-287)||(15973566-15973650)
chr7 (51-122)||(13313625-13313696)
chr7 (208-288)||(13313484-13313564)
chr7 (43-122)||(26286482-26286561)
chr7 (208-288)||(10674447-10674527)
chr7 (160-287)||(10387520-10387647)
chr7 (160-287)||(10392259-10392386)
chr7 (43-112)||(30258781-30258850)
chr7 (208-288)||(4580306-4580386)
[»] chr3 (8 HSPs)
chr3 (208-288)||(29351074-29351154)
chr3 (48-120)||(29350924-29350996)
chr3 (159-269)||(20508427-20508537)
chr3 (43-144)||(2207115-2207216)
chr3 (3-111)||(13155950-13156059)
chr3 (208-288)||(3656429-3656508)
chr3 (3-111)||(12566031-12566140)
chr3 (3-111)||(13260434-13260543)
[»] chr6 (4 HSPs)
chr6 (208-288)||(19674620-19674700)
chr6 (160-287)||(11428766-11428893)
chr6 (208-288)||(12689819-12689899)
chr6 (43-122)||(12689664-12689743)
[»] chr1 (7 HSPs)
chr1 (233-288)||(12260848-12260903)
chr1 (50-178)||(16036305-16036434)
chr1 (43-144)||(23192142-23192243)
chr1 (220-287)||(5283443-5283510)
chr1 (208-287)||(16036453-16036532)
chr1 (48-139)||(40166647-40166738)
chr1 (43-121)||(39587697-39587775)
[»] chr5 (9 HSPs)
chr5 (50-163)||(4872586-4872699)
chr5 (179-252)||(17162675-17162748)
chr5 (208-288)||(9725935-9726015)
chr5 (200-252)||(17159215-17159267)
chr5 (204-286)||(22832689-22832771)
chr5 (216-288)||(4872742-4872814)
chr5 (3-106)||(23688731-23688835)
chr5 (3-122)||(25688987-25689107)
chr5 (208-288)||(35679067-35679147)
[»] scaffold0054 (2 HSPs)
scaffold0054 (43-122)||(26134-26213)
scaffold0054 (208-288)||(26288-26368)
[»] scaffold0002 (1 HSPs)
scaffold0002 (3-111)||(150929-151038)
[»] scaffold0009 (1 HSPs)
scaffold0009 (43-111)||(147740-147808)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 23853870 - 23853583
Alignment:
Q  1 caaagttttagaatacttttcagtgtaccgaatgaactagctagctatccttttataggaagagtttataactaatacagagaaacttagaaattaagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853870 caaagttttagaatacttttcagtgtaccgaatgaactagctagctatccttttataggaagagtttataactaatacagagaaacttagaaattaagta 23853771  T
Q  101 aacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatcggacaagctaaaaagaaataaactcacaaaagtggaagaaccaaattaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853770 aacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatcggacaagctaaaaagaaataaactcacaaaagtggaagaaccaaattaact 23853671  T
Q  201 gaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853670 gaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 23853583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 23853519 - 23853455
Alignment:
Q  352 tatgttccatttcatgtgggaccccacactcaattgtttttcaatttaataactaaagttcaatt 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23853519 tatgttccatttcatgtgggaccccacactcaattgtttttcaatttaataactaaagttcaatt 23853455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 287
Target Start/End: Complemental strand, 19577875 - 19577774
Alignment:
Q  185 aagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtga 284  Q
    ||||| |||| ||| || |||||||||||| |||||||| ||||||| ||||||| |||||||||||| || |||| | ||||||||||||| |||||||    
T  19577875 aagaaacaaactaattggatatgaatgaaggaaatatagaaaactca-ttggattctcaatcttatcaaaatcaacgtgaactaaaattatgcgaagtga 19577777  T
Q  285 tat 287  Q
    |||    
T  19577776 tat 19577774  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 28603933 - 28604013
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| |||||||| ||| ||||||| |||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  28603933 aatgaaggaaagataggaaattcagttggattctcaatcttatcataacgaacataacctaaaattatgggaagtgatatc 28604013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 44630697 - 44630617
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| |||| ||| ||| |||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  44630697 aatgaaggaaagatagaaaattcagttggattttcaatcttatcacaacaaacataacctaaaattatgagaagtgatatc 44630617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 31327431 - 31327511
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccat 123  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | |||||||||    
T  31327431 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccat 31327511  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 31334152 - 31334232
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccat 123  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | |||||||||    
T  31334152 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccat 31334232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 38592056 - 38592155
Alignment:
Q  177 aaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatg 276  Q
    |||| |||| ||| |||| ||| |||||||||||| || |||||||||| |||||||| |||  |||||||||||| || ||||||||  ||||||||||    
T  38592056 aaaaatggaggaaacaaactaaatgaatatgaatggaggaaatataggatactcaattagatactcaatcttatcacaatcaacataagttaaaattatg 38592155  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 42926074 - 42926006
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaat 111  Q
    |||| |||||||||||| ||||||| ||||||||  ||||||| |||  ||||||||||||||||||||    
T  42926074 agctctccttttatagggagagtttgtaactaatttagagaaatttaagaattaagtaaacttaaaaat 42926006  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 15446537 - 15446452
Alignment:
Q  203 atatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    |||||||||||| ||  ||| |||||||| || |||| ||||||||||||  | | |||||| ||||||||||| |||||||||||    
T  15446537 atatgaatgaaggaacgataagaaactcagttcgattctcaatcttatcacgacctacataagctaaaattatgtgaagtgatatc 15446452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 28603786 - 28603855
Alignment:
Q  51 ttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacc 120  Q
    ||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||    
T  28603786 ttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacc 28603855  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 31328925 - 31328989
Alignment:
Q  224 gaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    |||| ||| ||||||| |||||||||||| ||  ||||||| |||||||| ||||||||||||||    
T  31328925 gaaattcagttggattctcaatcttatcacaacaaacataacctaaaattgtgagaagtgatatc 31328989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 31335646 - 31335710
Alignment:
Q  224 gaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    |||| ||| ||||||| |||||||||||| ||  ||||||| |||||||| ||||||||||||||    
T  31335646 gaaattcagttggattctcaatcttatcacaacaaacataacctaaaattgtgagaagtgatatc 31335710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 287
Target Start/End: Complemental strand, 40846879 - 40846751
Alignment:
Q  159 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 258  Q
    ||||||||| |||  |||||||||||| ||| |||| | | | ||| ||||||||| ||| ||| |||| ||||||| ||| | | |||||||| || ||    
T  40846879 aaaaagaaacaaatccacaaaagtggaggaaacaaactcattaaatttgaatgaaggaaagataagaaattcaattgaattcttattcttatcacaacca 40846780  T
Q  259 acataaactaaaattatgagaagtgatat 287  Q
     ||||||||||| ||||  ||||||||||    
T  40846779 tcataaactaaatttataggaagtgatat 40846751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 32080175 - 32080292
Alignment:
Q  159 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 258  Q
    ||||| ||| |||| |||||||| ||||||| ||||  || || |||||||||||  | | ||| |||| |||| |||||| |||||||||||| || ||    
T  32080175 aaaaataaacaaacccacaaaaggggaagaaacaaacaaattggatatgaatgaatgagagataagaaaatcaaatggattctcaatcttatcacaacca 32080274  T
Q  259 acataaactaaaattatg 276  Q
    || ||| | |||||||||    
T  32080275 acgtaagcaaaaattatg 32080292  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 285
Target Start/End: Original strand, 7002328 - 7002571
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 142  Q
    |||| |||||||||||  | ||||| ||| ||||   ||||||||||  |||||||||||||||||||| | ||||||||   |||| || |||||| ||    
T  7002328 agctctccttttatagagatagtttgtaaataatttggagaaacttaataattaagtaaacttaaaaattacgcaacccacaaatcagctcaagtaacaa 7002427  T
Q  143 acggatcggacaag-ctaaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggatttt 241  Q
    ||| ||| || |||  |||||||||| |||| |||||||||||||  |  | ||||| |  |||||||||||||||| |||| ||||| | |||||||      
T  7002428 acgaatcagataagtttaaaaagaaagaaacccacaaaagtggaatgaatagattaatttgatatgaatgaagaaaagatagaaaactgagttggattca 7002527  T
Q  242 caatcttatcataaacaacataaactaaaattatgagaagtgat 285  Q
     ||||||| || || ||||| ||||||||||||||  |||||||    
T  7002528 aaatcttaacacaaccaacacaaactaaaattatggaaagtgat 7002571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 288
Target Start/End: Complemental strand, 22714412 - 22714166
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 142  Q
    |||| ||||||||||||  |||||| ||| ||||   ||||||||||  ||||||||||||||| |||| | ||||||||  ||||| || |||||| ||    
T  22714412 agctctccttttatagggggagtttgtaaataatttggagaaacttaagaattaagtaaacttagaaattaagcaacccacagatcagctcaagtaacaa 22714313  T
Q  143 acggatcggacaagct-aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggatttt 241  Q
    ||  |||| | ||||| ||||||||| |||| || |||| | || ||| |||| | | ||||||||||||||  ||  | | |||||||||||| ||| |    
T  22714312 actaatcgcataagctaaaaaagaaacaaacccaaaaaattagatgaaacaaactcattgaatatgaatgaaagaatgacaagaaactcaattgaattct 22714213  T
Q  242 caatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
     | |||||||| |  |||||||| ||||| ||||| |||||||||||    
T  22714212 tattcttatcacagccaacataagctaaatttatgggaagtgatatc 22714166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 1910198 - 1910117
Alignment:
Q  206 tgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 287  Q
    ||||||||| ||||||| |||| ||||||  ||| | | |||||||| || || |||||| |||| ||||||||||||||||    
T  1910198 tgaatgaaggaaatataagaaattcaattaaattcttattcttatcacaaccaccataaattaaatttatgagaagtgatat 1910117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 16948814 - 16948928
Alignment:
Q  174 cacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaatt 273  Q
    |||||||||| | ||| |||| ||| || ||||| |||||| | |||||||||||||| || |||| ||||||||||||||| |||||||| ||||||||    
T  16948814 cacaaaagtgaatgaaacaaactaattggatatggatgaaggagatataggaaactcagttcgattctcaatcttatcataaccaacataagctaaaatt 16948913  T
Q  274 atgagaagtgatatc 288  Q
    ||| ||| |||||||    
T  16948914 atgggaaatgatatc 16948928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 8029759 - 8029663
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaa 139  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||||  ||||| || ||||||    
T  8029759 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaa 8029663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 19102813 - 19102893
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| |||| ||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  19102813 aatgaaggaaagatagaaaattcagttggattctcaatcttatcacaacaaacataacctaaaattatgagaagtgatatc 19102893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 33468292 - 33468166
Alignment:
Q  160 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 259  Q
    |||||||| |||  |||||||||||| ||| |||| ||  ||||| ||||||||| ||||||| |||| ||||||  ||| | | ||||||||||| ||     
T  33468292 aaaagaaacaaatccacaaaagtggaggaaacaaactat-tgaatttgaatgaaggaaatataagaaattcaattaaattcttattcttatcataaccac 33468194  T
Q  260 cataaactaaaattatgagaagtgatat 287  Q
    ||||| ||||| ||||| ||||||||||    
T  33468193 cataagctaaatttatgggaagtgatat 33468166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 19102659 - 19102794
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 142  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||| ||||||||||||||| | ||||||||   |||| || |||||| ||    
T  19102659 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaatt-agtaaacttaaaaattaagcaacccacatatcagctcaagtaacaa 19102757  T
Q  143 acggatcggacaagct-aaaaagaaataaactcacaa 178  Q
    ||| || ||| ||| | ||||||||| |||| |||||    
T  19102758 acgaataggataagttcaaaaagaaacaaacccacaa 19102794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 287
Target Start/End: Complemental strand, 39216395 - 39216267
Alignment:
Q  159 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 258  Q
    ||||||||| |||  |||||||||| | ||| |||| | | ||||||||||  ||| ||| |||| ||||||||||| ||| | | |||||||| || ||    
T  39216395 aaaaagaaacaaatccacaaaagtgtaggaaacaaactcattgaatatgaaccaaggaaagatagaaaactcaattgaattcttattcttatcacaacca 39216296  T
Q  259 acataaactaaaattatgagaagtgatat 287  Q
    ||||||  |||| ||||| ||||||||||    
T  39216295 acataagataaatttatgcgaagtgatat 39216267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 47244977 - 47245057
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| || ||||||||| ||| ||||||| |||||| ||||| ||  ||||||| ||||||||||| ||| |||||||    
T  47244977 aatgaaggaagtataggaaattcagttggattctcaatcatatcacaacaaacataacctaaaattatgggaaatgatatc 47245057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 12875251 - 12875330
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 287  Q
    ||||||| ||| |||||||| |||  || ||| ||||| |||||| || |||||||| ||||||||||| ||||||||||    
T  12875251 aatgaaggaaagataggaaattcagctgcattctcaatgttatcacaaccaacataacctaaaattatgggaagtgatat 12875330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 16955137 - 16955240
Alignment:
Q  174 cacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaatt 273  Q
    |||||||||||| ||| |||| ||| |  | |||||||||| ||| ||  |||||||| ||||||| |||||||||||| || ||||| ||  |||||||    
T  16955137 cacaaaagtggatgaaacaaactaatttgacatgaatgaaggaaagattagaaactcagttggattatcaatcttatcacaaccaacaaaatataaaatt 16955236  T
Q  274 atga 277  Q
    ||||    
T  16955237 atga 16955240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 19107289 - 19107368
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 122  Q
    |||| |||||||||||| ||| ||| ||||||||   |||||| |||  |||||||||||||||||||| | ||||||||    
T  19107289 agctctccttttatagggagaatttgtaactaatttggagaaatttaagaattaagtaaacttaaaaattaagcaaccca 19107368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 29349502 - 29349376
Alignment:
Q  160 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 259  Q
    |||||||| ||| ||||||||||||| ||| |||||||  || || ||||||||| ||||||| |||| | ||||  ||||| | |||||||||||  |     
T  29349502 aaaagaaacaaattcacaaaagtggaggaaacaaattat-tggatttgaatgaaggaaatataagaaatttaattaaatttttattcttatcataacaac 29349404  T
Q  260 cataaactaaaattatgagaagtgatat 287  Q
    ||||| ||||| ||||| ||| ||||||    
T  29349403 cataagctaaatttatgggaaatgatat 29349376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 15973566 - 15973650
Alignment:
Q  203 atatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 287  Q
    |||| ||||||||||| |||||||  ||||||| ||||||| |||||||| || |||||||||||||||||||| ||||| ||||    
T  15973566 atataaatgaagaaaagataggaagttcaattgtattttcagtcttatcacaaccaacataaactaaaattatgggaagttatat 15973650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 13313696 - 13313625
Alignment:
Q  51 ttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 122  Q
    ||||||||||||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||||    
T  13313696 ttttataggaagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaaccca 13313625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 13313564 - 13313484
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| ||| |||| ||  ||||||| || ||||||||| || |||||||||||||||||||| |||||||||||    
T  13313564 aatgaaggaaagatatgaaattctgttggattctcgatcttatcacaaccaacataaactaaaattatgtgaagtgatatc 13313484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 26286561 - 26286482
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 122  Q
    |||| |||||||| | | ||||||| ||||||||   ||||||||||  |||||||||||||||||||| ||||||||||    
T  26286561 agctctccttttacaaggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattatgcaaccca 26286482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 10674447 - 10674527
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| | |||||| |||| | |||| |||||||||||  || ||||||||||| |||||||| |||||||||||    
T  10674447 aatgaaggaaagagaggaaattcaactagattctcaatcttatcgcaaccaacataaactcaaattatgggaagtgatatc 10674527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 10387647 - 10387520
Alignment:
Q  160 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 259  Q
    |||||||| ||| ||||||||||||| ||| |||| |   || || ||||||||||||| ||| |||| ||||||| ||| | | |||||||| ||  |     
T  10387647 aaaagaaacaaattcacaaaagtggaggaaacaaactcgttggatttgaatgaagaaaagataagaaattcaattgaattcttattcttatcacaacaac 10387548  T
Q  260 cataaactaaaattatgagaagtgatat 287  Q
    ||||| ||||| ||||| ||||||||||    
T  10387547 cataagctaaatttatgggaagtgatat 10387520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 10392386 - 10392259
Alignment:
Q  160 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 259  Q
    |||||||| |||  |||||||||||| ||| |||| | | || || ||||||||| ||| ||| |||| ||||||| ||| | | |||||||| || ||     
T  10392386 aaaagaaacaaatccacaaaagtggaggaaacaaactcattggatttgaatgaaggaaagataagaaattcaattgaattcttattcttatcacaatcac 10392287  T
Q  260 cataaactaaaattatgagaagtgatat 287  Q
    ||||| ||||| ||||| ||||||||||    
T  10392286 cataacctaaatttatgggaagtgatat 10392259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 30258781 - 30258850
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatc 112  Q
    |||| ||||| |||||| ||| ||| |||||||| |  |||||||||  |||||||||||||||||||||    
T  30258781 agctctccttatatagggagaatttgtaactaattcgaagaaacttaagaattaagtaaacttaaaaatc 30258850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 4580306 - 4580386
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| |||||||| ||| ||||||| |||||||||||| ||  |  |||| ||| ||||||| |||||||||||    
T  4580306 aatgaaggaaagataggaaattcagttggattctcaatcttatcacaacaagtataagctacaattatgggaagtgatatc 4580386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 29351074 - 29351154
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| |||||||| ||| ||| |||||||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  29351074 aatgaaggaaagataggaaattcagttgaattttcaatcttatcacaacaaacataatctaaaattatgagaagtgatatc 29351154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 29350924 - 29350996
Alignment:
Q  48 tccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacc 120  Q
    |||||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||    
T  29350924 tccttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacc 29350996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 20508427 - 20508537
Alignment:
Q  159 aaaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaaca 258  Q
    |||| |||| |||| |||||||||||| ||| |||| ||| |||||||||| |||||||| ||||  || ||| |||||||   | |||||||| || ||    
T  20508427 aaaatgaaacaaacccacaaaagtggaggaaacaaactaattgaatatgaacgaagaaaagatagagaattcagttggattaatattcttatcacaacca 20508526  T
Q  259 acataaactaa 269  Q
    |||||||||||    
T  20508527 acataaactaa 20508537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 2207216 - 2207115
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 142  Q
    |||| |||||||| ||| ||||||| ||||| ||    |||||||||  |||||||||||||||||||| | ||||||||| ||||| || |||||| ||    
T  2207216 agctctccttttacagggagagtttgtaactgatttgaagaaacttaataattaagtaaacttaaaaattaagcaacccatagatcagctcaagtaacaa 2207117  T
Q  143 ac 144  Q
    ||    
T  2207116 ac 2207115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 13156059 - 13155950
Alignment:
Q  3 aagttttagaatacttttcagtgtaccgaatgaactagct-agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaa 101  Q
    |||||| ||||||||| || ||| | |||||||||||| | |||| |||||||||||| |||||| || | ||||   ||||||||||  | ||||||||    
T  13156059 aagtttcagaatacttctcggtgcatcgaatgaactaggtgagctctccttttatagggagagttcatgattaatctggagaaacttaagagttaagtaa 13155960  T
Q  102 acttaaaaat 111  Q
    ||||||||||    
T  13155959 acttaaaaat 13155950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 3656508 - 3656429
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    |||||| |||| |||||||| ||| ||| ||| |||||||||||| ||  |||||||  ||||||||||||||||||||||    
T  3656508 aatgaaaaaaagataggaaattcagttg-attatcaatcttatcacaacaaacataacataaaattatgagaagtgatatc 3656429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 12566140 - 12566031
Alignment:
Q  3 aagttttagaatacttttcagtgtaccgaatgaactag-ctagctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaa 101  Q
    |||||| ||||||||| || ||| | |||||||||||| | |||| | |||||||||| |||||| || | ||||   |||||||||   ||||||||||    
T  12566140 aagtttcagaatacttctcggtgcatcgaatgaactaggcgagctctgcttttatagggagagttcatgattaatctggagaaacttcagaattaagtaa 12566041  T
Q  102 acttaaaaat 111  Q
    ||||||||||    
T  12566040 acttaaaaat 12566031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 13260543 - 13260434
Alignment:
Q  3 aagttttagaatacttttcagtgtaccgaatgaactag-ctagctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaa 101  Q
    |||||| ||||||||| || ||| | |||||||||||| | |||| | |||||||||| |||||| || | ||||   |||||||||   ||||||||||    
T  13260543 aagtttcagaatacttctcggtgcatcgaatgaactaggcgagctctgcttttatagggagagttcatgattaatctggagaaacttcagaattaagtaa 13260444  T
Q  102 acttaaaaat 111  Q
    ||||||||||    
T  13260443 acttaaaaat 13260434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 19674620 - 19674700
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| |||||||| ||| ||||||| |||||||||||| ||  ||||||| ||||||||||| |||||||||||    
T  19674620 aatgaaggaaagataggaaattcagttggattctcaatcttatcaaaacaaacataacctaaaattatgggaagtgatatc 19674700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 11428766 - 11428893
Alignment:
Q  160 aaaagaaataaactcacaaaagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaa 259  Q
    |||||||| |||  |||||||||||| ||| |||||||  ||| | ||||||||| ||||||| |||| ||||||| |||   | | |||||| || |||    
T  11428766 aaaagaaacaaatccacaaaagtggaggaaacaaattatttgattttgaatgaaggaaatataagaaattcaattgaattcatatttttatcacaaccaa 11428865  T
Q  260 cataaactaaaattatgagaagtgatat 287  Q
    ||||| ||||| ||||| ||||||||||    
T  11428866 cataagctaaatttatgggaagtgatat 11428893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 12689819 - 12689899
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| |||||||  ||| ||||||| |||||| ||||| ||  ||||||| ||||||||||| |||||||||||    
T  12689819 aatgaaggaaagataggaatttcagttggattctcaatcatatcacaacaaacataacctaaaattatgggaagtgatatc 12689899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 12689664 - 12689743
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 122  Q
    |||| |||||||||| | ||||||||||| | ||   ||||||||||  |||||||||||||||||||| | ||||||||    
T  12689664 agctctccttttataaggagagtttataattgatttggagaaacttaagaattaagtaaacttaaaaattaagcaaccca 12689743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 12260848 - 12260903
Alignment:
Q  233 ttggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| |||||||||||| || |||||||| |||||||||||||||||||||||    
T  12260848 ttggattctcaatcttatcacaaccaacataagctaaaattatgagaagtgatatc 12260903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 16036305 - 16036434
Alignment:
Q  50 cttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatc 149  Q
    |||||||||| ||||||| ||||||||   ||||||||||  |||||||||||||||||||| | ||||||||  ||||| || ||| || ||||  |||    
T  16036305 cttttatagggagagtttgtaactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagaaacaaactaatc 16036404  T
Q  150 ggacaagct-aaaaagaaataaactcacaa 178  Q
    ||| ||| | ||||||||| |||| |||||    
T  16036405 ggataagttcaaaaagaaacaaacccacaa 16036434  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 23192243 - 23192142
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaa 142  Q
    |||| |||||||||||| ||||||| ||||||||   |||||||| |  |||||||||||||||||||| | ||||||||  ||||| || |||||| ||    
T  23192243 agctctccttttatagggagagtttgtaactaatttggagaaactaaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaacaa 23192144  T
Q  143 ac 144  Q
    ||    
T  23192143 ac 23192142  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 5283510 - 5283443
Alignment:
Q  220 ataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 287  Q
    ||||||||||||||| ||||||||||||||||| ||  || |||| ||||||||| |  |||||||||    
T  5283510 ataggaaactcaattagattttcaatcttatcacaacgaatataagctaaaattaaggaaagtgatat 5283443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 16036453 - 16036532
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatat 287  Q
    ||||||| ||| ||| |||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||  |||||||||    
T  16036453 aatgaaggaaagataagaaattcagttggattctcaatcttatcacaacaaacataacctaaaattatggaaagtgatat 16036532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 40166647 - 40166738
Alignment:
Q  48 tccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaa 139  Q
    ||||||| |||| | | ||||||||||||   ||||||||||  |||||||||||||||||||| | ||||||||  ||||| || ||||||    
T  40166647 tccttttttagggataatttataactaatttggagaaacttaagaattaagtaaacttaaaaattaagcaacccacagatcagctcaagtaa 40166738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 39587775 - 39587697
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccc 121  Q
    |||| |||||||| ||| ||||||| ||||||||   ||||||| ||  |||||||||||||||||||| | |||||||    
T  39587775 agctctccttttacagggagagtttgtaactaatttggagaaacataagaattaagtaaacttaaaaattaagcaaccc 39587697  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 4872586 - 4872699
Alignment:
Q  50 cttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaacccatggatcatctaaagtaaaaaacggatc 149  Q
    |||||||||| ||||||| ||||||||   ||||||||||  |||||| ||||||||||||| | |||||||| | | || || |||||| |||| ||||    
T  4872586 cttttatagggagagtttgtaactaatttggagaaacttaagaattaaataaacttaaaaattaagcaacccacgtaccagctcaagtaacaaactgatc 4872685  T
Q  150 ggacaagctaaaaa 163  Q
    ||| ||| ||||||    
T  4872686 ggataagttaaaaa 4872699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 17162675 - 17162748
Alignment:
Q  179 aagtggaagaaccaaattaactgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatca 252  Q
    ||||||| ||| ||||  || ||||||||||||||||||| |||||||||||| ||||| | ||||||||||||    
T  17162675 aagtggaggaaacaaacgaattgaatatgaatgaagaaaagataggaaactcagttggactctcaatcttatca 17162748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 9726015 - 9725935
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| |||| ||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||| ||||||||||    
T  9726015 aatgaaggaaagatagaaaattcagttggattctcaatcttatcacaataaacataacctaaaattatgaaaagtgatatc 9725935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 17159215 - 17159267
Alignment:
Q  200 tgaatatgaatgaagaaaatataggaaactcaattggattttcaatcttatca 252  Q
    ||||||||||||||||||| |||||||||| | ||||| ||||||||||||||    
T  17159215 tgaatatgaatgaagaaaagataggaaacttagttggagtttcaatcttatca 17159267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 22832771 - 22832689
Alignment:
Q  204 tatgaatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgata 286  Q
    ||||||||||| ||| ||| || | |||||||||||  || |||||||| |||||||||||||||||| ||||  ||||||||    
T  22832771 tatgaatgaaggaaagataagatattcaattggattcacattcttatcacaaacaacataaactaaaactatggaaagtgata 22832689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 4872742 - 4872814
Alignment:
Q  216 aaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    |||||||||||| ||| ||||||| |||||||||||| ||  ||||||| ||||| ||||| | |||||||||    
T  4872742 aaatataggaaattcagttggattctcaatcttatcacaacaaacataacctaaagttatggggagtgatatc 4872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 23688731 - 23688835
Alignment:
Q  3 aagttttagaatacttttcagtgtaccgaatgaactag-ctagctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaa 101  Q
    |||||| | |||||||||  ||||| ||||| |||||| | |||| ||||||||||| || ||||| |||| |||  |||||||||||  ||||||||||    
T  23688731 aagtttcaaaatacttttatgtgtagcgaattaactaggcgagctctccttttatagtaaaagtttgtaacaaatctagagaaacttaagaattaagtaa 23688830  T
Q  102 actta 106  Q
    |||||    
T  23688831 actta 23688835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 25689107 - 25688987
Alignment:
Q  3 aagttttagaatacttttcagtgtaccgaatgaactag-ctagctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaa 101  Q
    |||||| |||||||||||| |||   | |||||||||| | |||| |||||||||||| | ||||| |||| ||| |  |||||||||  ||||||||||    
T  25689107 aagtttcagaatacttttcggtgagtcaaatgaactaggcgagctctccttttataggtaaagtttgtaacaaatccgtagaaacttaataattaagtaa 25689008  T
Q  102 acttaaaaatcatgcaaccca 122  Q
    |||||||| | | ||||||||    
T  25689007 acttaaaagttaagcaaccca 25688987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 35679147 - 35679067
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| ||| |||| ||| ||||||| | |||||||||| ||  ||||||| ||||||||||| ||||| |||||    
T  35679147 aatgaaggaaagatatgaaattcagttggattcttaatcttatcacaacaaacataacctaaaattatgggaagtaatatc 35679067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 26134 - 26213
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaatcatgcaaccca 122  Q
    |||| |||||||||||| ||||||| ||||||||   ||||||||||  |||||||| ||||||||||| | ||||||||    
T  26134 agctctccttttatagggagagtttgtaactaatttggagaaacttaagaattaagttaacttaaaaattaagcaaccca 26213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 26288 - 26368
Alignment:
Q  208 aatgaagaaaatataggaaactcaattggattttcaatcttatcataaacaacataaactaaaattatgagaagtgatatc 288  Q
    ||||||| ||| |||| ||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||||  ||||||||||    
T  26288 aatgaaggaaagatagaaaattcagttggattctcaatcttatcacaacaaacataacctaaaattatggaaagtgatatc 26368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 150929 - 151038
Alignment:
Q  3 aagttttagaatacttttcagtgtaccgaatgaactagct-agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaa 101  Q
    |||||| ||||||||| || ||| | |||||||||||| | |||| |||||||||||| |||||| || | ||||   ||||||||||  | ||||||||    
T  150929 aagtttcagaatacttctcggtgcatcgaatgaactaggtgagctctccttttatagggagagttcatgattaatctggagaaacttaagagttaagtaa 151028  T
Q  102 acttaaaaat 111  Q
    ||||||||||    
T  151029 acttaaaaat 151038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 147808 - 147740
Alignment:
Q  43 agctatccttttataggaagagtttataactaatacagagaaacttagaaattaagtaaacttaaaaat 111  Q
    |||| |||||||||| | ||||||| ||||||||   ||||||||||  ||||| ||||||||||||||    
T  147808 agctctccttttatatggagagtttgtaactaatttggagaaacttaagaattaggtaaacttaaaaat 147740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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