View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6339_high_22 (Length: 423)
Name: NF6339_high_22
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 19137473 - 19137082
Alignment:
| Q |
16 |
tcacctattacaacaacaacaacaagcacaaccgctccagtatcagagcggttgtgaatgatgatgagtcgacacaagaccttcgccctgtgtttgtggg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19137473 |
tcacctattacaacaacaacaacaagcacaaccgctccagtatcagagcggttgtgaatgatgatgagtcgacacaagaccttcgccccgtgtttgtggg |
19137374 |
T |
|
| Q |
116 |
aaagacacggcggcgataccttgttaactctgaagttgttggtcatcctctttttaaggagcttgtggataggtcacgcgattcgaccgaggtaaatgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19137373 |
aaagacacggcggcgataccttgttaactctgaagttgttggtcatcctctttttaaggagcttgtggataggtcacgcgattcgaccgaggtaaatgat |
19137274 |
T |
|
| Q |
216 |
gaagatgatacggttaacgtggcttgtgaggttgtcttgttcgagcatatgttgtggatgattgagaatactgatcctcaaccggaatcattggatgaac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19137273 |
gaagatgatacggttaacgtggcttgtgaggttgtcttgttcgagcatatgttgtggatgattgagaatactgatcctcaaccggaatcattggatgaac |
19137174 |
T |
|
| Q |
316 |
tcgtcgattattacagttgctagctgtgtcgtggtaacagcatttgagcaaaagatcatgcattaatatcccttgtatgtatatgtatatgt |
407 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19137173 |
tcgttgattattacagttgctagctgtgtcgtggtaacagcatttgagcaaaagatcatgcattagtatcccttgtatgtatatgtatatgt |
19137082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 51687326 - 51687418
Alignment:
| Q |
237 |
gcttgtgaggttgtcttgttcgagcatatgttgtggatgattgagaatactgatcctcaaccggaatcattggatgaactcgtcgattattac |
329 |
Q |
| |
|
||||||||||||||| | ||||| ||| |||| |||||| |||| ||| ||||||||||||| ||||| | |||||||| ||||||| |||| |
|
|
| T |
51687326 |
gcttgtgaggttgtccttttcgaacatttgttatggatgcttgaaaatgctgatcctcaacctgaatctcttgatgaacttgtcgatttttac |
51687418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University