View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_high_25 (Length: 390)
Name: NF6339_high_25
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 3521624 - 3521986
Alignment:
| Q |
18 |
cttcctgtgttaattctattgaatctgcgcttaaggatgttaacggtgttcaaagtattgctgtttcggtaattgatggccgcgccgcggtcaaatttgt |
117 |
Q |
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| T |
3521624 |
cttcctgtgttaattctattgaatctgcgcttaaggatgttaacggtgttcaaagtattgctgtttcggtaattgatggccgcgccgcggtcaaatttgt |
3521723 |
T |
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| Q |
118 |
tcctaaactaataactgtaagcctcaaaatcatcattatttaattttattatatgaatttcatgatttattcactagtcatagaagtgattattttattg |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3521724 |
tcctaaactcataactgtaagcctcaaaatcatcattatttaattttattatatgaatttcatgatttattcactagtcatagaagtgattattttattg |
3521823 |
T |
|
| Q |
218 |
ttaaaaaatcaagaaaaaagttgtaattattaggttctgaattgtgtttttaattaattatgggttannnnnnnaattgtaggcgaaaagaataaaagaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3521824 |
ttaaaaaatcaagaaaaaagttgtaattattaggttctgaattgtgtttttaattaattatgggttattttcttaattgtaggcgaaaagaataaaagaa |
3521923 |
T |
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| Q |
318 |
agtatggaagagagtgggtttagggttaatgaggttcatgatcatgaccaagatatatctgtg |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3521924 |
agtatggaagagagtgggtttagggttaatgaggttcatgatcatgaccaagatatatctgtg |
3521986 |
T |
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