View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_high_3 (Length: 708)
Name: NF6339_high_3
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 28328699 - 28329168
Alignment:
| Q |
18 |
attgagtcactgagactatggcaagtaaacatggttataacctaaattctgtaagatatttcttatacaaggttatgttattccgatatgtatagacttt |
117 |
Q |
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| T |
28328699 |
attgagacactgagactatggcaagtaaacatggttataacctaaattctgtaagatatttcttatacaaggttatgttattccgatatgtatagacttt |
28328798 |
T |
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| Q |
118 |
attttcnnnnnnnatttagagaatgtaatgaggcactgagagcaggctaaataatcattgcttcagttcaatacgtgctataaacaaaaattaattgaat |
217 |
Q |
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| T |
28328799 |
attttctttttttatttagagaatgtaatgaggcactgagagcaggctaaataatcattgcttcagttcaatacgtgctataaacaaaaattaattgaat |
28328898 |
T |
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| Q |
218 |
attaaagcataaggagaaagcagaagaagagatattagaaactaaacatagcacatataacttggaatgcaagttattaattcacaacaaagccagctaa |
317 |
Q |
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| T |
28328899 |
attaaagcataaggagaaagcagaagaagagatattagaaactaaacatagcacatataacttggaatgcaagttattaattcacaacaaagccagctaa |
28328998 |
T |
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| Q |
318 |
gcaaacagttagaggacagctcaacagttagttagaagcatataatagaagtttgttatggtagtttggtaaaagttagtgaaataagaagagatacatt |
417 |
Q |
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| T |
28328999 |
gcaaacagttagaggacagctcaacagttagttagaagcatataatagaagtttgttatggtagtttggtaaaagttagtgaaataagaagagatacatt |
28329098 |
T |
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| Q |
418 |
ctc-tttttcccttttctctcattcttcagaggcatctcactgaaaccacttagcctttccttgtccaac |
486 |
Q |
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| T |
28329099 |
ctcttttttcccttttctctcattcttcagaggcatcttgttgaaaccacttagctattccttatccaac |
28329168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 428 - 698
Target Start/End: Original strand, 28329174 - 28329444
Alignment:
| Q |
428 |
cttttctctcattcttcagaggcatctcactgaaaccacttagcctttccttgtccaacgatcatcattttccgagatgacattgtatctcagaaaattc |
527 |
Q |
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| T |
28329174 |
cttttctctcattcttcagaggcatctcactgaaaccacttagcctttccttgtccaatgatcatcattttccgagatgacattgtatctcagaaaattc |
28329273 |
T |
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| Q |
528 |
aacacattccgtccaatctcaaccttgtttcttcggttttctcatgctcgcccttccgctccaactcaatttcaatcacctcagaatgaggatcttgatt |
627 |
Q |
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| T |
28329274 |
aacacattccgtccaatctcaaccttgtttcttcggttttctcatgctcgcccttccgctccaactcaatttcaatcacctcagaatgaggatcttgatt |
28329373 |
T |
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| Q |
628 |
ctttcaagaatctaccggttaagtcttcttctccacgcataatcgagttcaacaatcgattacactctctg |
698 |
Q |
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| T |
28329374 |
ctttcaagaatctaccggttaagtcttcttctccacgcataatcgagttcaacaatcgattacactctctg |
28329444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 29948235 - 29948184
Alignment:
| Q |
138 |
gaatgtaatgaggcactgagagc--aggctaaataatcattgcttcagttca |
187 |
Q |
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| T |
29948235 |
gaatgtagtgaggcactgagagctaaggcttaataatcattgcttcacttca |
29948184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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