View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_high_43 (Length: 259)
Name: NF6339_high_43
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_high_43 |
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| [»] scaffold0354 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 25014596 - 25014815
Alignment:
| Q |
7 |
gtacaacaacaagtctaccatcacacctcaataagtctaatcaacctgaggaattgatggatagaatcattaaacaaattcaacgcacaggaaactataa |
106 |
Q |
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| T |
25014596 |
gtacaacaacaagtctaccatcacacctcaataagtctaatcaacctgaggaattgatggatagaatcatcaaacaaattcaacgcacaggaaactaaaa |
25014695 |
T |
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| Q |
107 |
ccccttcaaaatcagatccaaacaaaatgaactcgcaaaaggaaagcagggatctcgcaaatctgatcagaaaaggaaagggacacaacacaatcaatcg |
206 |
Q |
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| T |
25014696 |
ccccttcaaaatcagatccaaacaaaatgaactcgcaaaaggaaagcagggatctcgcaaatccgatcagaaaaggaaagggacacaacacaatcaatcg |
25014795 |
T |
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| Q |
207 |
gaacaagaaatagaagaaca |
226 |
Q |
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|||||||||||| ||||||| |
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| T |
25014796 |
gaacaagaaataaaagaaca |
25014815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 19115949 - 19116097
Alignment:
| Q |
52 |
ctgaggaattgatggatagaatcattaaacaaattcaacgcacaggaaactataaccccttcaaaatcagatccaaacaaaatgaactcgcaaaaggaaa |
151 |
Q |
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| T |
19115949 |
ctgatgaattgaaggatagaatcatcaaa-aaattcaacgcacaagagactaaaaccccttcataattagatccaaccaaaatgaaatcgtaagaggaaa |
19116047 |
T |
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| Q |
152 |
gcagggatctcgcaaatctgatcagaaaaggaaagggacacaacacaatcaa |
203 |
Q |
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| T |
19116048 |
tcagtgatctcacaa--ccgaacacaaaaggaaaggaacagaacacaatcaa |
19116097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 6651 - 6799
Alignment:
| Q |
52 |
ctgaggaattgatggatagaatcattaaacaaattcaacgcacaggaaactataaccccttcaaaatcagatccaaacaaaatgaactcgcaaaaggaaa |
151 |
Q |
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|||| ||||||| | |||||||||| ||| ||||||||||||||| | |||| |||||||||| ||| |||||||| ||||| ||| ||| || |||||| |
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| T |
6651 |
ctgatgaattgaagaatagaatcatcaaa-aaattcaacgcacagtagactaaaaccccttcataattagatccaaccaaaaggaaatcgtaagaggaaa |
6749 |
T |
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| Q |
152 |
gcagggatctcgcaaatctgatcagaaaaggaaagggacacaacacaatcaa |
203 |
Q |
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| T |
6750 |
tctgggatctcacaa--ccgaacacaaaaggaaaggaacagaacacaatcaa |
6799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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