View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_high_56 (Length: 240)
Name: NF6339_high_56
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 32899015 - 32899190
Alignment:
| Q |
11 |
ggagtagcaaagggtggtggttgacagtggtggtggtctcaacatgggaggattaggttcttctgagcttgattgcatgtggaactattaattaaggatt |
110 |
Q |
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| T |
32899015 |
ggaggagcaaagggtggtggttgacagtggtggtggtctcaacatgggaggattaggttcttctgagcttgattgcatgtggaactattaattaaggatt |
32899114 |
T |
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| Q |
111 |
atgagtagtagatttaattatgtgtctatgatttcaatcaaagattttaattaggatttaacttgtttaaggttgc |
186 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32899115 |
atgattagtagatttaattatttgtctatgatttcaatcaaatattttaattaggatttaacttgtttaaggttgc |
32899190 |
T |
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