View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_high_59 (Length: 236)
Name: NF6339_high_59
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1238826 - 1239060
Alignment:
| Q |
1 |
ttgtttccttctcttctctagacttgaatattttattctaagacaaccaccttactcagaatccaaagcactatagagaattcaaatgcaaatagagtat |
100 |
Q |
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| T |
1238826 |
ttgtttccttctcttctctagacttgaatattttattctaagacaaccaccttactcagaatccaaagcactatagagaattcaaatgcaaatagagtat |
1238925 |
T |
|
| Q |
101 |
gaagcattcctctatcaagtgcaaacccatacaatgttattcccccatggttgtgttgtagatacgtcactgcaaaaatcaaacacaataaaacctcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1238926 |
gaagcattcctctatcaagtgcaaacccatacaatgttattcccccatggttgtgttgtagatacgtcactgcaaaaatcaaacacaataaaacctcaca |
1239025 |
T |
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| Q |
201 |
----taacccaataataaagagataatgatgatgt |
231 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
1239026 |
taattaacccaataataaagagataatgattatgt |
1239060 |
T |
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