View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_high_61 (Length: 231)
Name: NF6339_high_61
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 46593409 - 46593265
Alignment:
| Q |
17 |
aatatatggtgtggaggatgcaattctacgactgcaaagggtgtccggttcaatgcagagaagaagcaagttgggaattactactctacaaaggtatgtg |
116 |
Q |
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| T |
46593409 |
aatatatggtgtggaggatgcaattctacgactgcaaagggtgtccggttcaatgcagagaagaagcaagttgggaattactactctacaaaggtatgtg |
46593310 |
T |
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| Q |
117 |
gcgaagcatctaatgtttattatggctacagcggcaaattatttt |
161 |
Q |
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| T |
46593309 |
gcgaagcatctaatgtttattatggctacagcggcaaattatttt |
46593265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 4437429 - 4437573
Alignment:
| Q |
17 |
aatatatggtgtggaggatgcaattctacgactgcaaagggtgtccggttcaatgcagagaagaagcaagttgggaattactactctacaaaggtatgtg |
116 |
Q |
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| T |
4437429 |
aatatatggtgtggaggatgcaattctacgactgcaaagggtgtccggttcaatgcatagaagaagcaagttgggaattactactctacaaaggtatgtg |
4437528 |
T |
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| Q |
117 |
gcgaagcatctaatgtttattatggctacagcggcaaattatttt |
161 |
Q |
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| T |
4437529 |
gcgaagcatctaatgtttattatggctacagcggcaaattatttt |
4437573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 37717731 - 37717587
Alignment:
| Q |
17 |
aatatatggtgtggaggatgcaattctacgactgcaaagggtgtccggttcaatgcagagaagaagcaagttgggaattactactctacaaaggtatgtg |
116 |
Q |
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| T |
37717731 |
aatatatggtgtggaggatgcaattctacgagtgcaaagggtgttcggttcaatgcagagaagaagcaagttgggaattactactctacaaaggtatgtg |
37717632 |
T |
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| Q |
117 |
gcgaagcatctaatgtttattatggctacagcggcaaattatttt |
161 |
Q |
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| T |
37717631 |
gcgaagcatctaatgtttattatggctacagcggcaaattatttt |
37717587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 37609136 - 37609179
Alignment:
| Q |
169 |
gatcaagttcctattaccccatccaacaaaaacttataacttag |
212 |
Q |
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| T |
37609136 |
gatcaagttcctattaccccatccagcaaaaacttttaacttag |
37609179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 42078274 - 42078120
Alignment:
| Q |
17 |
aatatatggtgtggaggatgcaattctacgactgcaaagggtgtccggttcaatgcagagaagaagcaagttgggaattactactctacaaaggtatgt- |
115 |
Q |
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||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42078274 |
aatatatggtgcggaggatgcaattctatgattgcaaagggtgtccggttcaatgcagagaagaagcaagttgggaattactactctacaaaggtatgtt |
42078175 |
T |
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| Q |
116 |
---------ggcgaagcatctaatgtttattatggctacagcggcaaattatttt |
161 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42078174 |
gaagtagagtgcaaagcatctaatgtttattatggctacagcgacaaattatttt |
42078120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 8631982 - 8631939
Alignment:
| Q |
169 |
gatcaagttcctattaccccatccaacaaaaacttataacttag |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8631982 |
gatcaagttcctattaccccatccagcaaaaacttataacttag |
8631939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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