View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6339_high_9 (Length: 535)
Name: NF6339_high_9
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 7098853 - 7099373
Alignment:
| Q |
1 |
tcatcactgataacaggagtcttgacaggtgtatcaccacccttccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7098853 |
tcatcactgataacaggagtcttgacaggtgtatcaccacccttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttag |
7098952 |
T |
|
| Q |
101 |
cttcagataaactaccaacattttgtaagcctttgatctacagctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7098953 |
cttcagataaactaccaacattttgtaagcctttgatctccagctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaatt |
7099052 |
T |
|
| Q |
201 |
aacaatataaacacttaaggttcttaagcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7099053 |
aacaatataaacacttaaggttcttaagcaagataattttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaaga |
7099152 |
T |
|
| Q |
301 |
ttttgtaagcaagacaagtgttctggaagacaactcagtttggtaaaggctcgcaacttcaagatttccaatctttgtaagttataaactgagttaggga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7099153 |
ttttgtaagcaagacaagtgttctggaagacaactcagtttggtaaaggctcgcaacttcaagatttccaatctttgtaagttataaactgagttaggga |
7099252 |
T |
|
| Q |
401 |
agggttttatgccaaaattgtgaagctctaaatacctcagatgaattagactaccgagtaatgagaattcaaaagtgtctgttcgcaaaacccgaagagt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7099253 |
agggttttatgccaaaattgtgaagctctaaatacctcagatgaattagactaccgagtaatgagaattcaaaagtgtctgttcgcaaaacccgaagagt |
7099352 |
T |
|
| Q |
501 |
gtgctttattggtatgaaact |
521 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7099353 |
gtgctttattggtatgaaact |
7099373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 45 - 519
Target Start/End: Complemental strand, 7582349 - 7581875
Alignment:
| Q |
45 |
ccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagc |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||| |||||| |||||||| |||||| |||| |
|
|
| T |
7582349 |
ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatttggtaagcctctgatctccagc |
7582250 |
T |
|
| Q |
145 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
7582249 |
tttcctcctaagtttagatcacgtaactccgctaagctatgtcctttctcggaatttacaatataaacacttaatgttcttaagcaagataattttccaa |
7582150 |
T |
|
| Q |
245 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagtttggt |
344 |
Q |
| |
|
||| |||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
7582149 |
catgacgaaacatgcgagacaacaaatgacaatcttcaatgactaaatgtctaagattttgtaagcaagacaagtgttccggaagacaactcaggttgga |
7582050 |
T |
|
| Q |
345 |
aaaggctcgcaacttcaagatttccaatctttgtaagttataaactgagttagggaagggttttatgccaaaattgtgaagctctaaatacctcagatga |
444 |
Q |
| |
|
||| || ||| |||||||||| ||| |||||||| |||||| ||||| ||||||| || |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7582049 |
aaaatctttcaatttcaagattttcaacttttgtaagctataaattgagtcggggaaggtttctatgtcaaaattgtgaagctctaaatacctcaaatga |
7581950 |
T |
|
| Q |
445 |
attagactaccgagtaatgagaattcaaaagtgtctgttcgcaaaacccgaagagtgtgctttattggtatgaaa |
519 |
Q |
| |
|
|||| |||||| |||||||| || || |||||| |||| |||||| ||||| |||| ||||| ||||| |||| |
|
|
| T |
7581949 |
attaaactaccaagtaatgataactctaaagtgcttgttttcaaaacgcgaagggtgtactttactggtaagaaa |
7581875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 45 - 513
Target Start/End: Original strand, 13616084 - 13616549
Alignment:
| Q |
45 |
ccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagc |
144 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
13616084 |
ccatgacaagaataattcatcgaggtcttttttatccattaaattggcttcttgagcttcaaataaactacctatattttgtaagcctttgatctccagc |
13616183 |
T |
|
| Q |
145 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
244 |
Q |
| |
|
||||||||||| | ||||||| |||||| ||||||| ||| |||| | |||||||||||| ||| ||| ||||||| |||| |||| ||||||| |
|
|
| T |
13616184 |
tttcctcctaagtctagatcatgtaactttgctaagttatctcct------agattaacaatatagacagttattgttcttaggcaatataattttccaa |
13616277 |
T |
|
| Q |
245 |
tgtgaggaaacatgcgagacaatgaattacaa---ccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
341 |
Q |
| |
|
|||||||| | || ||||||| |||| |||| |||||||| | ||| |||||||| |||||||||||||||| ||| ||||| |||||||| | |
|
|
| T |
13616278 |
tgtgaggacccttgtgagacaacgaataacaatttaattcaatgacttaatatctaagatgttgtaagcaagacaagcgtttcggaaggaaactcagtct |
13616377 |
T |
|
| Q |
342 |
ggtaaaggctcgcaacttcaagatttccaatctttgtaagttataaactgagttagggaagggttttatgccaaaattgtgaagctctaaatacctcaga |
441 |
Q |
| |
|
|| ||||||| ||||||||||||||||| | |||||| | |||||| ||||| |||||||| |||||| ||||| |||||||||| |||||| ||| | |
|
|
| T |
13616378 |
gggaaaggctttcaacttcaagatttccattttttgtatgctataaattgagtcagggaaggtttttatctcaaaactgtgaagctccaaatacatcaaa |
13616477 |
T |
|
| Q |
442 |
tgaattagactaccgagtaatgagaattcaaaagtgtctgttcgcaaaacccgaagagtgtgctttattggt |
513 |
Q |
| |
|
|||||| || |||||||||||| || || | ||||| | ||| |||| | |||| ||||||||| ||||| |
|
|
| T |
13616478 |
tgaatttaaccaccgagtaatgataactctatagtgttttttcttaaaaactgaagggtgtgctttcttggt |
13616549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 49 - 338
Target Start/End: Complemental strand, 20297217 - 20296928
Alignment:
| Q |
49 |
gacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagctttc |
148 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||||| ||| ||||||| || |||||||||||| ||| |||| |
|
|
| T |
20297217 |
gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactcagttttc |
20297118 |
T |
|
| Q |
149 |
ctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaatgtg |
248 |
Q |
| |
|
| || | ||||||||||||||||||| ||||||| ||||||| ||| ||||||| || |||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
20297117 |
caccaagttttagatcacgtaactctgtcaagctattccctttctttaaactaacaatgtacacacttaatgttcttagacaagataattttccaatgct |
20297018 |
T |
|
| Q |
249 |
aggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcag |
338 |
Q |
| |
|
||||||||| |||||||| || |||| ||||||||| || ||||||||||||||||| ||| | |||||||| |||||||||||||| |
|
|
| T |
20297017 |
aggaaacattcgagacaaagaccaacaatcttcaatgactatatgtctaagattttgtaggcaggccaagtgtttcggaagacaactcag |
20296928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 333
Target Start/End: Original strand, 52351438 - 52351727
Alignment:
| Q |
44 |
tccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacag |
143 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| |||| |||||||| ||| | | |||||||| || | |||||||| || ||||| || ||| |
|
|
| T |
52351438 |
tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag |
52351537 |
T |
|
| Q |
144 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
243 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||| | || || | | | | || || || ||||||| ||||||| | ||||||| ||||| |
|
|
| T |
52351538 |
ttttccttctagctttagatcacgtaactctgccaagttgtgccccgtttttgatctgactatgtatacacttactgttcttagggaagataatcttcca |
52351637 |
T |
|
| Q |
244 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaa |
333 |
Q |
| |
|
|||| ||| ||||| | |||||||||| |||| |||||||||| | |||||| |||| || ||||||| ||| ||||||| |||||| |
|
|
| T |
52351638 |
atgtaagggaacatacaagacaatgaaaaacaatcttcaatgataagatgtctgagatgttttaagcaattcaaacgttctggtagacaa |
52351727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 182 - 514
Target Start/End: Original strand, 17982513 - 17982846
Alignment:
| Q |
182 |
tatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttc |
281 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| | | ||||||| ||||| ||||||||||||||||||||| ||||||| |||| ||||| ||| |
|
|
| T |
17982513 |
tatgtcctttctctggattaacaatatagacacttaatgattttaagcatgataattttccaatgtgaggaaacatgtgagacaacgaataacaacgttc |
17982612 |
T |
|
| Q |
282 |
aatgattaaatgtctaagattttgtaagc-aagacaagtgttctggaagacaactcagtttggtaaaggctcgcaacttcaagatttccaatctttgtaa |
380 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||| ||| || ||||||||||||||| || | | ||| ||||||||||||||| ||||||| |
|
|
| T |
17982613 |
aatgactaaatgtctaagattttgtaaacaaagacagacgtttcggcagacaactcagtttgtaaacagatttcaatttcaagatttccaatttttgtaa |
17982712 |
T |
|
| Q |
381 |
gttataaactgagttagggaagggttttatgccaaaattgtgaagctctaaatacctcagatgaattagactaccgagtaatgagaattcaaaagtgtct |
480 |
Q |
| |
|
| |||||| ||||| ||||| |||||| ||||| |||||||||| |||||||||| |||||||| |||| |||||||||| || || ||||| | | |
|
|
| T |
17982713 |
gctataaattgagtcggggaatatttttatctcaaaactgtgaagctccaaatacctcaaatgaattaaactaacgagtaatgataactctaaagtcttt |
17982812 |
T |
|
| Q |
481 |
gttcgcaaaacccgaagagtgtgctttattggta |
514 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| |
|
|
| T |
17982813 |
gttcttaaaacccgaagagtttgctttattggta |
17982846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 45 - 341
Target Start/End: Original strand, 30749116 - 30749412
Alignment:
| Q |
45 |
ccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagc |
144 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| ||||| || ||| ||||||||||||||| |||||||| | ||| |||||||| ||| |
|
|
| T |
30749116 |
ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcagt |
30749215 |
T |
|
| Q |
145 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
244 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| |||| ||| ||||||| |
|
|
| T |
30749216 |
tttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttccaa |
30749315 |
T |
|
| Q |
245 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
341 |
Q |
| |
|
||| |||||||||| ||||||| || ||||| | ||||||| || ||||||||||||||||||||||| |||| ||| ||| |||||||||||||| |
|
|
| T |
30749316 |
tgttaggaaacatgagagacaaagatttacatctgtcaatgactatatgtctaagattttgtaagcaagccaagcgttttgggagacaactcagttt |
30749412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 44 - 341
Target Start/End: Complemental strand, 30243003 - 30242706
Alignment:
| Q |
44 |
tccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacag |
143 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| ||||| || ||| ||||||||||||||| |||||||| | |||| || ||| ||| |
|
|
| T |
30243003 |
tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaagtgttggatactcag |
30242904 |
T |
|
| Q |
144 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
243 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| |||||||||| |||||||| ||||||| |||| ||| |||||| |
|
|
| T |
30242903 |
ttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatatacacacttaatgttcttagacaagttaattttcca |
30242804 |
T |
|
| Q |
244 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
341 |
Q |
| |
|
|||| |||||||||| ||||||| || ||| ||| ||||| || ||||||||||||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
30242803 |
atgttaggaaacatgagagacaaagaccgacattctttaatgactatatgtctaagattttgtaagcaagccaagtgttttgggagacaactcagttt |
30242706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 43 - 341
Target Start/End: Original strand, 30059840 - 30060138
Alignment:
| Q |
43 |
ttccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctaca |
142 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| |||| ||||| || ||| ||||||| |||| || |||||||| | ||| |||| ||| | || |
|
|
| T |
30059840 |
ttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataacctgccaacattgtttaatccttggatatgca |
30059939 |
T |
|
| Q |
143 |
gctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcc |
242 |
Q |
| |
|
| ||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| |||| ||| ||||| |
|
|
| T |
30059940 |
gttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttcc |
30060039 |
T |
|
| Q |
243 |
aatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
341 |
Q |
| |
|
||||| |||||||||| ||||||| || ||| ||||||||| || ||||||||||||||||||||||| |||| ||| ||| |||||||||||||| |
|
|
| T |
30060040 |
aatgttaggaaacatgagagacaaagaccgacatacttcaatgactatatgtctaagattttgtaagcaagccaagcgttttgggagacaactcagttt |
30060138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 44 - 341
Target Start/End: Complemental strand, 30339156 - 30338859
Alignment:
| Q |
44 |
tccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacag |
143 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||| |||| ||||| || ||| |||||||||||| || |||||||| | ||| |||| ||| | ||| |
|
|
| T |
30339156 |
tccacgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcag |
30339057 |
T |
|
| Q |
144 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
243 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| |||||||| |||||| |
|
|
| T |
30339056 |
ttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagataattttcca |
30338957 |
T |
|
| Q |
244 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
341 |
Q |
| |
|
|||| ||||||||| ||||||| || ||| ||||||||| || ||| ||||||||||||||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
30338956 |
atgttaggaaacattagagacaaagaccgacattcttcaatgactatatgcctaagattttgtaagcaagccaagcgttttggaagacaactcagttt |
30338859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 44 - 340
Target Start/End: Original strand, 30435294 - 30435590
Alignment:
| Q |
44 |
tccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacag |
143 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| || | ||||| || ||| |||||||||||||||||||||||| | ||| |||||||| ||| |
|
|
| T |
30435294 |
tccacgacaagcataattcatgaaggtcttttttacccttcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgatactcag |
30435393 |
T |
|
| Q |
144 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
243 |
Q |
| |
|
||||| || | ||||||||| ||||||||| ||||||| ||||||||| ||| ||||||| || |||||||| ||||||| |||| ||| |||||| |
|
|
| T |
30435394 |
ttttccaccgaggtttagatcatgtaactctgtcaagctatttcctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttcca |
30435493 |
T |
|
| Q |
244 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagtt |
340 |
Q |
| |
|
|||| |||||||| ||| | || || ||| |||||||||| || |||||||||||||||||||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
30435494 |
atgttgggaaacattcgaaataaagatccacatccttcaatgactatatgtctaagattttgtaagcaaaccaagcgttttgggagacaactcagtt |
30435590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 45 - 329
Target Start/End: Complemental strand, 30677798 - 30677514
Alignment:
| Q |
45 |
ccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagc |
144 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| || || || ||| |||||||||||||||| ||||||| | ||| |||||||| ||| |
|
|
| T |
30677798 |
ccatgacaagcataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaactagcaacattgtttaatcctttgatactcagt |
30677699 |
T |
|
| Q |
145 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
244 |
Q |
| |
|
||||| | | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| |||||||| |||| ||| |||| || |
|
|
| T |
30677698 |
tttccactgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttctaa |
30677599 |
T |
|
| Q |
245 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaag |
329 |
Q |
| |
|
||| ||||||||| |||||||| || | |||| |||||||| || |||||||||||||||||| |||| |||| ||| |||||| |
|
|
| T |
30677598 |
tgttaggaaacatacgagacaaagattcacaatattcaatgactatatgtctaagattttgtaaacaagccaagcgttttggaag |
30677514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 44 - 338
Target Start/End: Original strand, 30482876 - 30483170
Alignment:
| Q |
44 |
tccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacag |
143 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| ||||| || ||| |||||||||||| || |||||||| | ||| |||| ||| | ||| |
|
|
| T |
30482876 |
tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcag |
30482975 |
T |
|
| Q |
144 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
243 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| | | ||||||| || |||||||| ||||||| |||| ||| |||||| |
|
|
| T |
30482976 |
ttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctacactaacaatgtacacacttaatgttcttagacaagttaattttcca |
30483075 |
T |
|
| Q |
244 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcag |
338 |
Q |
| |
|
|||| ||||||||| ||||||| || ||| ||||||||| || ||| ||||||||||||||||||| |||| ||| ||| ||||||||||| |
|
|
| T |
30483076 |
atgttaggaaacatttgagacaaagaccgacattcttcaatgactatatgcctaagattttgtaagcaagccaagcgttttgggagacaactcag |
30483170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 43 - 341
Target Start/End: Complemental strand, 30714054 - 30713756
Alignment:
| Q |
43 |
ttccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctaca |
142 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| |||| ||||| || ||| ||||||| ||||||| |||||||| | ||| |||||||| || |
|
|
| T |
30714054 |
ttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactca |
30713955 |
T |
|
| Q |
143 |
gctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcc |
242 |
Q |
| |
|
| ||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| |||| ||| ||||| |
|
|
| T |
30713954 |
gttttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaagttaattttcc |
30713855 |
T |
|
| Q |
243 |
aatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
341 |
Q |
| |
|
||||| ||||||||| |||||||| || ||| ||||||||| || |||||||||||||||||| |||| |||| ||| ||||| ||||| ||||| |
|
|
| T |
30713854 |
aatgttaggaaacattcgagacaaagatcgacattcttcaatgactatatgtctaagattttgtaaacaagccaagcgtttcggaaggcaactaagttt |
30713756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 45 - 340
Target Start/End: Original strand, 29852784 - 29853079
Alignment:
| Q |
45 |
ccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagc |
144 |
Q |
| |
|
||||||||| |||||||||| | |||| ||||| |||| ||||| || ||| ||||||||||||||| || |||| || |||||||||||| |||| |
|
|
| T |
29852784 |
ccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagcctttgatactcagc |
29852883 |
T |
|
| Q |
145 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
244 |
Q |
| |
|
||||| || | |||||||||| |||||||| ||||||| |||||||| ||| ||||||| || | ||||| ||||||| |||||||| || |||| |
|
|
| T |
29852884 |
tttccaccaaggtttagatcacataactctgtcaagctattccctttctctaaactaacaatgtacatgcttaatgttcttagacaagataatttgccaa |
29852983 |
T |
|
| Q |
245 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagtt |
340 |
Q |
| |
|
||| |||||||||| ||||||| || ||| |||| ||||| || ||||||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
29852984 |
tgttaggaaacatgagagacaaagatcgacatcctttaatgactatatgtctaagattttgtaagcaagccaagtgtttcgggagacaactcagtt |
29853079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 44 - 318
Target Start/End: Original strand, 29871658 - 29871932
Alignment:
| Q |
44 |
tccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacag |
143 |
Q |
| |
|
|||||||||||||||||| || |||||||||||| |||| ||||| || ||| ||||||||||||||| |||||||| | ||| |||| ||| ||| |
|
|
| T |
29871658 |
tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcag |
29871757 |
T |
|
| Q |
144 |
ctttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttcca |
243 |
Q |
| |
|
||||| || | ||||||||||||||||||| || |||| |||||||| ||| ||||||| || |||||||| |||||||| |||| ||| |||||| |
|
|
| T |
29871758 |
ttttccaccgagttttagatcacgtaactctgtcaaactattccctttctctaaactaacaatgtacacacttaatgttcttaaacaagttaattttcca |
29871857 |
T |
|
| Q |
244 |
atgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaag |
318 |
Q |
| |
|
|||| ||||||||| | |||||| || ||| ||||||||| || |||||||||||||||||| |||| |||| |
|
|
| T |
29871858 |
atgttaggaaacatactagacaaagatcgacattcttcaatgactatatgtctaagattttgtaaacaagccaag |
29871932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 45 - 340
Target Start/End: Original strand, 30399550 - 30399845
Alignment:
| Q |
45 |
ccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagc |
144 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |||| || ||| ||||| ||||||||| |||| || || |||||||| ||| ||| |
|
|
| T |
30399550 |
ccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagt |
30399649 |
T |
|
| Q |
145 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
244 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||| ||| | || ||| ||||||| |
|
|
| T |
30399650 |
tttccaccgaggtttagatcacgtaactctgacaagctattccctttctctaaactaacaatgtacacacttaatgtttttagactagttaattttccaa |
30399749 |
T |
|
| Q |
245 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagtt |
340 |
Q |
| |
|
||| ||||||||| |||||||| || ||||| |||||| | || ||||||||||||||||||| ||| |||| ||| ||| |||||| |||||| |
|
|
| T |
30399750 |
tgttaggaaacattcgagacaaagatatacaatattcaataactatatgtctaagattttgtaagaaagccaagcgttttgggagacaaatcagtt |
30399845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 55 - 318
Target Start/End: Original strand, 30206008 - 30206271
Alignment:
| Q |
55 |
cataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagctttcctccta |
154 |
Q |
| |
|
|||||||| | ||||||||||||| |||| ||||||||| ||| ||||||||||||||||| ||||| | ||| |||||||| || |||||||| | |
|
|
| T |
30206008 |
cataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttgatacttagttttcctccca |
30206107 |
T |
|
| Q |
155 |
aatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaatgtgaggaaa |
254 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| || | ||| |||||||||| ||||| |
|
|
| T |
30206108 |
ggtttagatcgtgtaactctgccaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaggttaattttccaatgtatggaaa |
30206207 |
T |
|
| Q |
255 |
catgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaag |
318 |
Q |
| |
|
|||| || ||||||||| ||| ||| ||||| | |||||| ||||| ||||| |||| |||| |
|
|
| T |
30206208 |
catgtgaaacaatgaatggcaatctttaatgacaagatgtctgagattctgtaaacaagccaag |
30206271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 17418789 - 17418695
Alignment:
| Q |
43 |
ttccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgat |
137 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||| | || || || ||||||| ||||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
17418789 |
ttccacgacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgat |
17418695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 45 - 160
Target Start/End: Original strand, 17982400 - 17982514
Alignment:
| Q |
45 |
ccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagc |
144 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| | || ||||| ||||||| | ||||||||||||||| ||||||||| || || |||| | ||| |
|
|
| T |
17982400 |
ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactactgacattttgt-aggctctgatttccagt |
17982498 |
T |
|
| Q |
145 |
tttcctcctaaattta |
160 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
17982499 |
tttcctcctaagttta |
17982514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 30475010 - 30475150
Alignment:
| Q |
201 |
aacaatataaacacttaaggttcttaagcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaaga |
300 |
Q |
| |
|
|||||| || |||||||| ||||||| | || | || |||||||| | |||||||| | |||||||||||||||| ||||||||| | ||| || ||| |
|
|
| T |
30475010 |
aacaatgtatacacttaatgttcttaggaaatacaattttccaatataaggaaacacacaagacaatgaattacaatcttcaatgacaagatgcctgaga |
30475109 |
T |
|
| Q |
301 |
ttttgtaagcaagacaagtgttctggaagacaactcagttt |
341 |
Q |
| |
|
|| ||||| |||| |||||||| ||| ||| || ||||||| |
|
|
| T |
30475110 |
ttctgtaaacaagtcaagtgttttggtagaaaagtcagttt |
30475150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 30522084 - 30521963
Alignment:
| Q |
213 |
acttaaggttcttaagcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaa |
312 |
Q |
| |
|
|||||| ||||||| | ||||||| || ||||||| ||| |||| || ||||||| || |||| |||||| | | |||||| ||||||||||||||| |
|
|
| T |
30522084 |
acttaatgttcttagggaagataatttaccaatgttagggaacacacgggacaatgcatcacaattttcaataacaagatgtctgagattttgtaagcaa |
30521985 |
T |
|
| Q |
313 |
gacaagtgttctggaagacaac |
334 |
Q |
| |
|
| ||||||||| || ||||||| |
|
|
| T |
30521984 |
gtcaagtgttccggtagacaac |
30521963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 30562424 - 30562303
Alignment:
| Q |
213 |
acttaaggttcttaagcaagataagtttccaatgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaa |
312 |
Q |
| |
|
|||||| ||||||| | ||||||| || ||||||| ||| |||| || ||||||| || |||| |||||| | | |||||| ||||||||||||||| |
|
|
| T |
30562424 |
acttaatgttcttagggaagataatttaccaatgttagggaacacacgggacaatgcatcacaattttcaataacaagatgtctgagattttgtaagcaa |
30562325 |
T |
|
| Q |
313 |
gacaagtgttctggaagacaac |
334 |
Q |
| |
|
| ||||||||| || ||||||| |
|
|
| T |
30562324 |
gtcaagtgttccggtagacaac |
30562303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 30474853 - 30474932
Alignment:
| Q |
44 |
tccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattt |
123 |
Q |
| |
|
||||||||||| ||||||| | |||||| |||||| |||| |||||||| | | ||||||| |||| |||||||||||| |
|
|
| T |
30474853 |
tccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacattt |
30474932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 45 - 338
Target Start/End: Original strand, 26706817 - 26707110
Alignment:
| Q |
45 |
ccatgacaagcataattcatcgaggtcttttttaaccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctacagc |
144 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||| ||||||||||||| ||||||||||||||| ||||||| || |||||||| ||| ||| |
|
|
| T |
26706817 |
ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagccttcgatactcagt |
26706916 |
T |
|
| Q |
145 |
tttcctcctaaatttagatcacgtaactctgctaagctatgtcctttctcgaaattaacaatataaacacttaaggttcttaagcaagataagtttccaa |
244 |
Q |
| |
|
||||| || | ||||||||||||||||||| ||||||| |||||||| ||| ||||||| || |||||||| ||||||| || ||||| ||||||| |
|
|
| T |
26706917 |
tttccaccgaggtttagatcacgtaactctgtcaagctattccctttctctaaactaacaatgtacacacttaatgttcttagacaggataattttccaa |
26707016 |
T |
|
| Q |
245 |
tgtgaggaaacatgcgagacaatgaattacaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcag |
338 |
Q |
| |
|
|| ||||||||| |||||||| || ||| |||||||||| || |||||||||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
26707017 |
tgctaggaaacattcgagacaaagatccacatccttcaatgactatatgtctaagattttgtaaacaagtcaagtgtttaggaagacaactcag |
26707110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 25294271 - 25294203
Alignment:
| Q |
273 |
acaaccttcaatgattaaatgtctaagattttgtaagcaagacaagtgttctggaagacaactcagttt |
341 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||| ||| |||| |||||||| ||||||||| |
|
|
| T |
25294271 |
acaacattgaatgattagatgtctaagattttgtaagcaagccaaatgttttggaagaccactcagttt |
25294203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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