View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6339_low_1 (Length: 966)
Name: NF6339_low_1
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 392 - 870
Target Start/End: Complemental strand, 28971431 - 28970960
Alignment:
| Q |
392 |
ctgtaactatctgcaagtttgtttgttttggatacaaattggctctacttttctctttttctttagtataaaaagataagtaagataagtatttccattt |
491 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
28971431 |
ctgtaactatctgcaagtttgtttgttttagatacaaattggctctacttttctctttttcttttgt-----aagataagtaagagaagtatttccattt |
28971337 |
T |
|
| Q |
492 |
ggcttctctattttgaaggggtgcatagaggataaagtgcaatgataaccgttcattgaagaatcaattggattaaatttacaaaccatatagtcattta |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28971336 |
ggcttctctattttgaaggggtgcatagaggataaagtgcaatgataaccgttcattgaagaatcaattggattaaatttacaaaccatatagtcattta |
28971237 |
T |
|
| Q |
592 |
aatctcaatcgttgattttccaatgaacaagtataattctgcactttaacttctaaatgtaccccgtctggaaaagtcaaattcacttccatttctataa |
691 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28971236 |
aatctcaatcgttgattttccaatgaaccagtataattctgcactttaacttctaaatgtaccccgtctggaaaagtcaaattcacttccatttctataa |
28971137 |
T |
|
| Q |
692 |
gaaataaaggcaaagctttaaccaactaaatgattttttgattctaatannnnnnnnnnnnnnnnaacttgtgcaattgatatttgtaggctagaattca |
791 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28971136 |
gaaataaaggcaaagctttaaccaactaaatgattttttgattctaata--ttttttatttttttaacctgtgcaattgatatttgtaggctagaattca |
28971039 |
T |
|
| Q |
792 |
tttatgttgtttcagttgtttctctctctgattgatgtgtatgtatcnnnnnnncagcttgatgtgactgcactgcaag |
870 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
28971038 |
tttatgttgtttcagttgtttctctctctgattgatgtgtatgtatctttttttcagcttgatgtgactgcaccgcaag |
28970960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 28971808 - 28971497
Alignment:
| Q |
15 |
aacctgtgaggatcgcttcaatctgtaagtatttttgtttgatatgaatttcagagctactttctgttgatttctgatgtgtttgtatctctatgtttcc |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28971808 |
aacctatgaggatcgcttcaatctgtaagtatttttgtttgatatgaatttcagagctactttctgttgatttctgatgtgtttgtatctctatgtttcc |
28971709 |
T |
|
| Q |
115 |
aggtataggattgaacaagaacttggcactgaaataaaacaaattccaccattcattgaccaggctatatactgtcggtgattggtggtaaataccttgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28971708 |
aggtataggattgaacaagaacttggcactgaaataaaacaaattccaccattcattgaccaggctatatactgtcggtgattggtggtaaataccttgt |
28971609 |
T |
|
| Q |
215 |
ttgtattctcaactgtggtgaatcacgatggtaagtgatacgaagcatttacctttatttatgatgatagtcaatcttgtttgtgagattttatgatcta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28971608 |
ttgtattctcaactgtggtgaatcacgatggtaagtgatacgaagcatttacctttatttatgatgatagtcaatcttgtttgtgagattttatgatcta |
28971509 |
T |
|
| Q |
315 |
agagtgaaaata |
326 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28971508 |
agagtgaaaata |
28971497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 28994750 - 28994467
Alignment:
| Q |
21 |
tgaggatcgcttcaatctgtaagtatttttgtttgatatgaatttca------gagctactttctgttgatttctgatgtgtttgtatctctatgtt-tc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
28994750 |
tgaggatcgcttcaatctgtaagtatttttgttggatatgaatttgaattttagagctactttctgttgatttctgatgtgtctgtatctctatgttgtc |
28994651 |
T |
|
| Q |
114 |
caggtataggattgaacaagaacttggcactgaaataaaacaaattccaccattcattgaccaggctatatactgtcggtgattggtggtaaataccttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28994650 |
caggtataggattgaacaagaacttggcactgaaataaaacaaattccgccattcattgaccaggctgtatactgtcggtgattggtggtaaataccttg |
28994551 |
T |
|
| Q |
214 |
tttgtattctcaactgtggtgaatcacgatggtaagtgatacgaagcatttacctt---tatttatgatgatagtcaatcttgt |
294 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
28994550 |
tttgtattctcaactgtggtgaatcacaatggtaagtgataggaagcatttacctttaatatttatgatgatattcaatattgt |
28994467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 392 - 739
Target Start/End: Complemental strand, 28994384 - 28994038
Alignment:
| Q |
392 |
ctgtaactatctgcaagtttgtttgttttggatacaaattggctctacttttctctttttctttagtataaaaagataagtaagataagtatttccattt |
491 |
Q |
| |
|
|||||| | ||||||||||||||| |||| || ||||||||| ||||||||||| |||| || ||||||||| ||||||||| || ||||||||||| |
|
|
| T |
28994384 |
ctgtaattgtctgcaagtttgtttcttttagaaacaaattggacatacttttctctgtttcatttttataaaaagttaagtaagagaaatatttccattt |
28994285 |
T |
|
| Q |
492 |
ggcttctctattttgaaggggtgcatagaggataaagtgcaatgataaccgttcattgaagaatcaattggattaaatttacaaaccatatagtcattta |
591 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
28994284 |
ggcttctctattttgaagcggtgcatagaggattaagtgcaatgacaactgttcattgaagaatcaatgggattaaattaacaaaccatataatcattta |
28994185 |
T |
|
| Q |
592 |
aatctcaatcgttgattttccaatgaacaagtataattctgcactttaacttctaaatgtaccc--cgtctggaaaagtcaaattcacttccatttctat |
689 |
Q |
| |
|
|||||||||| || ||||||| ||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28994184 |
aatctcaatcactggttttccattgaaccagtataattctgcactttatcttctaaatgcacccctcgtctggaaaagtcaaattcacttccatttctat |
28994085 |
T |
|
| Q |
690 |
aagaaataaaggcaaagctttaaccaactaaatgattttttgattctaat |
739 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
28994084 |
aagaaat-aagccaaagc-ttaaccaactaaatgatttttt-attctaat |
28994038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 47 - 298
Target Start/End: Complemental strand, 28984113 - 28983855
Alignment:
| Q |
47 |
ttttgtttgatatgaatttcagagctactttctgttgatttctgatgtgtttgtatctctatgtt-tccaggtataggattgaacaagaacttggcactg |
145 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28984113 |
ttttgttagatatgaatttcagatctactttctggtgatttctgatgtgtttgtatctctatgttgtccaggtataggattgaacaagaacttggcactg |
28984014 |
T |
|
| Q |
146 |
aaataaaacaaattccaccattcattgaccaggctatatactgtcggtgattggtggtaaataccttgtt--tgtattctc-aactgtggtgaatcacga |
242 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| || || ||||||| || | |
|
|
| T |
28984013 |
aaataaaacaaattccgccattcattgaccaggccatatattgtcggtgattggtggtaaataccttgtttgtgtattctcaaagtgcggtgaataacaa |
28983914 |
T |
|
| Q |
243 |
tggtaagtgatacgaagcatttacctt---tatttatgatgatagtcaatcttgtttgt |
298 |
Q |
| |
|
|||||||||||| ||||| ||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
28983913 |
tggtaagtgataggaagccttttcctttaatatttatgatgatagtgaatcttgtttgt |
28983855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 478 - 739
Target Start/End: Complemental strand, 28983803 - 28983542
Alignment:
| Q |
478 |
aagtatttccatttggcttctctattttgaaggggtgcatagaggataaagtgcaatgataaccgttcattgaagaatcaattggattaaatttacaaac |
577 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||| ||||||||||||||||| || ||||||| |||||| |
|
|
| T |
28983803 |
aagtatttccatttggcttctctattatgaaggggtgcatagaggataaattgcaattacaactattcattgaagaatcaatggggttaaattaacaaac |
28983704 |
T |
|
| Q |
578 |
catatagtcatttaaatctcaatcgttgattttccaatgaacaagtataattctgcactttaacttctaaatgtaccccg--tctggaaaagtcaaattc |
675 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||||| |||||| ||| |||| || |||||| ||| |||||| ||||| | | |||| |||||||| |
|
|
| T |
28983703 |
catatagtcttttaaatctcaataattggttttcccatgaaccagttcaattgtgtactttatcttttaaatgcacccctcttttagaaaggtcaaatta |
28983604 |
T |
|
| Q |
676 |
acttccatttctataagaaataaaggcaaagctttaaccaactaaatgattttttgattctaat |
739 |
Q |
| |
|
| ||||||||||||||||||||| || || |||||||||| ||||||||||| |||||||| |
|
|
| T |
28983603 |
atttccatttctataagaaataa--gccaatgtttaaccaaccgaatgatttttttattctaat |
28983542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 868 - 948
Target Start/End: Complemental strand, 28970926 - 28970846
Alignment:
| Q |
868 |
aagttagggtattgttagacccttttgttgactgttttgttgttaattatgctctgtgtgagtatgcaataaggaagttag |
948 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28970926 |
aagttagggtattgttagacccttttgttgactgttttgttgttaattatgctctgtgtgagtatgcaataaggaagttag |
28970846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 868 - 940
Target Start/End: Complemental strand, 28993917 - 28993845
Alignment:
| Q |
868 |
aagttagggtattgttagacccttttgttgactgttttgttgttaattatgctctgtgtgagtatgcaataag |
940 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
28993917 |
aagttagggtattgttggacccttttgttgactgttttgtcgttaattatgctccgagtgagtatgcaataag |
28993845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 870 - 948
Target Start/End: Complemental strand, 28983354 - 28983276
Alignment:
| Q |
870 |
gttagggtattgttagacccttttgttgactgttttgttgttaattatgctctgtgtgagtatgcaataaggaagttag |
948 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||| ||||| | ||| |||||| ||||||||||| |
|
|
| T |
28983354 |
gttagggtattgttagacccttttgttgactattctgttgttaattatcctctgcgcgaggatgcaacaaggaagttag |
28983276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 868 - 915
Target Start/End: Complemental strand, 28983282 - 28983235
Alignment:
| Q |
868 |
aagttagggtattgttagacccttttgttgactgttttgttgttaatt |
915 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28983282 |
aagttaggttattgttagacccttttgttgactgttttgttgttaatt |
28983235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 868 - 915
Target Start/End: Complemental strand, 28970852 - 28970805
Alignment:
| Q |
868 |
aagttagggtattgttagacccttttgttgactgttttgttgttaatt |
915 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28970852 |
aagttagggaattgttagacccttttgtcgactgttttgttgttaatt |
28970805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 28984366 - 28984328
Alignment:
| Q |
15 |
aacctgtgaggatcgcttcaatctgtaagtatttttgtt |
53 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28984366 |
aacctatgaggatcgcttcaatctgtaagtatttttgtt |
28984328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 774 - 834
Target Start/End: Complemental strand, 28983488 - 28983428
Alignment:
| Q |
774 |
tttgtaggctagaattcatttatgttgtttcagttgtttctctctctgattgatgtgtatg |
834 |
Q |
| |
|
||||||| ||||||||||||||||| ||| | ||||||| ||| |||||||||||||||| |
|
|
| T |
28983488 |
tttgtagactagaattcatttatgtagttgctgttgtttgtcttgctgattgatgtgtatg |
28983428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 868 - 915
Target Start/End: Complemental strand, 28993841 - 28993794
Alignment:
| Q |
868 |
aagttagggtattgttagacccttttgttgactgttttgttgttaatt |
915 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
28993841 |
aagttagggcatttatagacccttttgtcgactgttttgttgttaatt |
28993794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 28994450 - 28994417
Alignment:
| Q |
275 |
atgatgatagtcaatcttgtttgtgagattttat |
308 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
28994450 |
atgatgatagccaatcttgtttgtgagattttat |
28994417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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