View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_11 (Length: 518)
Name: NF6339_low_11
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 193 - 478
Target Start/End: Complemental strand, 10255277 - 10254992
Alignment:
| Q |
193 |
tcagtcaaattggtattaattattatgatatttactaccattacatttcctagcagtagcacaatcatggtagaaaatcatatattttcttgtagtgtaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255277 |
tcagtcaaattggtattaattattatgatatttactaccattacatttcctagcagtagcacaatcatggtagaaaatcatatattttcttgtagtgtaa |
10255178 |
T |
|
| Q |
293 |
acaacttgaatacttccctatcaaacatgagcttcactgttcttcgacaaatcaaaattagaataataataaccgtattcaccatgatatgataaagcat |
392 |
Q |
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||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10255177 |
acatcttgaatacttccctaccaaacatgaacttcactgttcttccacaaatcaaaattagaataataataaccctattcaccatgatatgataaagcat |
10255078 |
T |
|
| Q |
393 |
gttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtgcattactactttactgaggcctt |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
10255077 |
gttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtacattactactttactgaagcctt |
10254992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 384 - 518
Target Start/End: Complemental strand, 10244474 - 10244340
Alignment:
| Q |
384 |
ataaagcatgttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtgcattactactttactgaggccttgtaaa |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
10244474 |
ataaagcatgttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtacattactactttactgaggcattgtaaa |
10244375 |
T |
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| Q |
484 |
gacgtgtattctaagagacaaacttcatagcattt |
518 |
Q |
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|| ||||||||||||||| |||||||||||||||| |
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| T |
10244374 |
gaagtgtattctaagagaaaaacttcatagcattt |
10244340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 10255455 - 10255354
Alignment:
| Q |
11 |
cagagatgcggtggagatcggtctgcgtgacggcgagggagggtgtggatgagatctgaagtgagagttccacgagtgtgttttcagaaagagaaatgtg |
110 |
Q |
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|||||||||||||||||||||| | ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255455 |
cagagatgcggtggagatcggtgcgtgtgacggcgaggg----tgaggatgagatctgaagtgagagttccacgagtgtgttttcagaaagagaaatgtg |
10255360 |
T |
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| Q |
111 |
tttgag |
116 |
Q |
| |
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|||||| |
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| T |
10255359 |
tttgag |
10255354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 10252948 - 10252901
Alignment:
| Q |
399 |
attgagattgactcaagccttatcatgttcagtaatgtctccactagt |
446 |
Q |
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|||||||||||||||||||| |||||||| | ||||||||||||||| |
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| T |
10252948 |
attgagattgactcaagcctcatcatgttgaacaatgtctccactagt |
10252901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Complemental strand, 10265569 - 10265514
Alignment:
| Q |
399 |
attgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagt |
454 |
Q |
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|||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| |
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|
| T |
10265569 |
attgagattgactcaagcctcatcatgttaagtaaagtctctcatagttctcaagt |
10265514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 10247966 - 10247930
Alignment:
| Q |
368 |
tattcaccatgatatgataaagcatgttgagattgag |
404 |
Q |
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|||||| ||||||| |||||||||||||||||||||| |
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| T |
10247966 |
tattcatcatgataggataaagcatgttgagattgag |
10247930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 20116508 - 20116548
Alignment:
| Q |
249 |
tagcacaatcatggtagaaaatcatatattttcttgtagtg |
289 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||| |
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| T |
20116508 |
tagcacaatcatggtaccaaatcttatattttcttgtagtg |
20116548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 290
Target Start/End: Original strand, 19412031 - 19412122
Alignment:
| Q |
193 |
tcagtcaaattggtattaattattatgatatttactaccattacatttcctagcagtagcacaatcatggtagaaaatcatatattttcttgtagtgt |
290 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
19412031 |
tcagtcaaattgtagttaattattatgatatttactaccattacatttcc------gagcacaatcatggtagcaaatcttatattttcttatagtgt |
19412122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 7467410 - 7467334
Alignment:
| Q |
208 |
ttaattattatgatatttactaccattacatttcctagcagtagcacaatcatggtagaaaatcatatattttcttgtagtgt |
290 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
7467410 |
ttaattataatgatatttactaccattacatttcct------agcacaatcatggtagcaaatctgatattttcttgtagtgt |
7467334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 31023077 - 31023115
Alignment:
| Q |
209 |
taattattatgatatttactaccattacatttcctagca |
247 |
Q |
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|||||||||| |||||||||||||||||||||| ||||| |
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| T |
31023077 |
taattattataatatttactaccattacatttcttagca |
31023115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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