View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_12 (Length: 502)
Name: NF6339_low_12
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 23 - 482
Target Start/End: Original strand, 2019006 - 2019467
Alignment:
| Q |
23 |
acacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgac |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019006 |
acacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgac |
2019105 |
T |
|
| Q |
123 |
aagccaggtacattcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttg-atttcagtatagaaatatagcctattg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
2019106 |
aagccaggtacattcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttgtattgcagtatagaaatatagcctattg |
2019205 |
T |
|
| Q |
222 |
tagctgtgtatagcctgtagaataacagctctcacatctagctagtctaagagagatttctaactaacggaatcaaatcagttagagggatttgacctct |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2019206 |
tagctgtgtatagcctgtagaataacagctctcacatctacctagtctaagagagatttctaactaactgaatcaaatcagttagagggatttgacctct |
2019305 |
T |
|
| Q |
322 |
ataaataccaatcatcctgtaatcattactaaacgacgatcaatgaagaatattcaaattccc-ctcatattctctttcatatctatttctcaaagataa |
420 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2019306 |
ataaataccaatcatcctgtaatcattactaaacgttgatcaatgaagaatattcagattccctctcatattctctttcatatctatttctcaaagataa |
2019405 |
T |
|
| Q |
421 |
cttgggtttcaattatatggatcattgattatttaattgatactggtgttccttcatttcag |
482 |
Q |
| |
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| T |
2019406 |
cttgggtttcaattatatggatcattgattatttaattgatactggtgttccttcttttcag |
2019467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 2035826 - 2035978
Alignment:
| Q |
23 |
acacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgac |
122 |
Q |
| |
|
|||| ||||||| |||| |||| ||||||||||| |||||||| |||||||||| | |||| ||||| ||||||||||||||||||||||| | ||||| |
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| T |
2035826 |
acacattaagaaaacatcttcccgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgac |
2035925 |
T |
|
| Q |
123 |
aagccaggtacattcattaccagtattgtgcagcctccactcttattcatggt |
175 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||| | ||||||||| |
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| T |
2035926 |
aagccaggtacattcattacgagtattgtgcagtctccactttcattcatggt |
2035978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 2021638 - 2021778
Alignment:
| Q |
23 |
acacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgac |
122 |
Q |
| |
|
|||||||||||| || | ||||||||||| ||| ||||||||| ||||||||| | |||| ||||| ||||||||||||||||||| ||||| ||||| |
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| T |
2021638 |
acacgttaagaaaacgtcttcctgtttctagttatgagggattaattgaacttcagaagattgctcaaaggtttgaagataagatttacacttctgcgac |
2021737 |
T |
|
| Q |
123 |
aagccaggtacattcattaccagtattgtgcagcctccact |
163 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||||| |
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|
| T |
2021738 |
aagcaaggtacattcattacgagtattgtgctgcctccact |
2021778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 1990076 - 1990230
Alignment:
| Q |
23 |
acacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgac |
122 |
Q |
| |
|
|||||||||||| | || |||| |||||||||| ||||||||||||||||||| | || | ||||| |||||||||||||||| |||||| ||| | |
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| T |
1990076 |
acacgttaagaaaatatcatcctatttctggttctgagggattacttgaacttcggaagcttgctcaaaggtttgaagataagatctatactgatgcggc |
1990175 |
T |
|
| Q |
123 |
aagccaggtacattcattaccagtattgtgcagcctccactcttattcatggtta |
177 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| | ||||||||||| |
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|
| T |
1990176 |
aagccaggtacattcattacgagtattgtgcagtctccactttcattcatggtta |
1990230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 1990425 - 1990503
Alignment:
| Q |
407 |
tttctcaaagataacttgggtttcaattatatggatcattgattatttaa-ttgatactggtgttccttcatttcagtc |
484 |
Q |
| |
|
||||||||||||| ||| |||||| | ||||| || ||| |||||||||| ||||||||||||||||||| |||||||| |
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| T |
1990425 |
tttctcaaagatagcttaggtttctactatattgaacatcgattatttaacttgatactggtgttccttcttttcagtc |
1990503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 2021893 - 2021940
Alignment:
| Q |
282 |
taactaacggaatcaaatcagttagagggatttgacctctataaatac |
329 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||| |||| |||| |
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|
| T |
2021893 |
taactaactgaatcaaataagttagagggatttgacctttatagatac |
2021940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 2021999 - 2022077
Alignment:
| Q |
407 |
tttctcaaagataacttgggtttcaattatatggatcattgattatttaatt-gatactggtgttccttcatttcagtc |
484 |
Q |
| |
|
||||||||||||| ||| |||||| | | ||| || ||| |||||||||| | ||||||||||||||||| |||||||| |
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| T |
2021999 |
tttctcaaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttcttttcagtc |
2022077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 40911160 - 40911269
Alignment:
| Q |
23 |
acacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgac |
122 |
Q |
| |
|
|||| |||| ||| ||| |||||||||||||| || ||||| | |||||||| | |||| | ||| |||||||||||||||||||||| | || || |
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| T |
40911160 |
acacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaagtttgaagataagatttatactgctgcaac |
40911259 |
T |
|
| Q |
123 |
aagccaggta |
132 |
Q |
| |
|
|||||||||| |
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|
| T |
40911260 |
aagccaggta |
40911269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 44968827 - 44968718
Alignment:
| Q |
23 |
acacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgac |
122 |
Q |
| |
|
|||| |||| ||| ||| |||||||||||||| || ||||| | |||||||| | |||| | ||| |||||||||| |||||||||||| | || || |
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|
| T |
44968827 |
acacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaggtttgaagagaagatttatactgctgcaac |
44968728 |
T |
|
| Q |
123 |
aagccaggta |
132 |
Q |
| |
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|||||||||| |
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|
| T |
44968727 |
aagccaggta |
44968718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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