View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_13 (Length: 499)
Name: NF6339_low_13
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 5 - 494
Target Start/End: Complemental strand, 26831969 - 26831480
Alignment:
| Q |
5 |
tacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatctattagtaatgaacggattaattaatattt |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26831969 |
tacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatctattagtaatgaactgattaattaatattt |
26831870 |
T |
|
| Q |
105 |
gtactatcctgcaaaataatttctaatcagtataagataaactatatagcaattaatttgcatcgaagcaaggttgttgaattaattaattaacgatgtg |
204 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831869 |
gtactatcctgcaaaataattcctaatcagtataagataaactatatagcaattaatttgcatcgaagcaaggttgttgaattaattaattaacgatgtg |
26831770 |
T |
|
| Q |
205 |
tgattttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttgg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831769 |
tgattttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttgg |
26831670 |
T |
|
| Q |
305 |
atcttcctcttacgccttctttggcttcaacggtaaaatccctaatctaatctcatcgcatggctaaaacagtttcatccattttccttctaaattgtga |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26831669 |
atcttcctcttacgccttctttggcttcaacggtaaaacccctaatctaatctcatcgcatggctaaaacagtttcatccattttccttctgaattgtga |
26831570 |
T |
|
| Q |
405 |
ttatagtcatagttatggttacgtacactgcaagctttgatactacaataatacaaacaaatgtggctgatatgcggccacaattatagc |
494 |
Q |
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| T |
26831569 |
ttatagtcatagttatggttacatacgctgcaagctttgatactacgataatacaaacaaatgtggctgatatgcggccacaattatagc |
26831480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 208 - 339
Target Start/End: Complemental strand, 26818016 - 26817885
Alignment:
| Q |
208 |
ttttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatc |
307 |
Q |
| |
|
||||| ||||||||| |||||||||| | |||||||| ||||| ||||||||| | ||||||||| |||||||||||| || ||||||||||| ||||| |
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|
| T |
26818016 |
ttttctctttgttttcagtgaatgcgaacgaatgtttgatgacgaggatgcaacaaatgtcactcgattatcattttaaggtagaacaagaagtgggatc |
26817917 |
T |
|
| Q |
308 |
ttcctcttacgccttctttggcttcaacggta |
339 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |
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|
| T |
26817916 |
ttccgcttacgccttctttggcttcaatggta |
26817885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 214 - 340
Target Start/End: Complemental strand, 26785120 - 26784994
Alignment:
| Q |
214 |
ctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctc |
313 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||| ||||||||| |||||||||| ||||||||||||| |||||||||||||| || ||||| | |
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|
| T |
26785120 |
ctttgtttttagtaaatgcgaatgaatgtttgatgacgaggatgcaaaagatgtcacttgattatcattttacggttgaacaagaagtggggtcttctac |
26785021 |
T |
|
| Q |
314 |
ttacgccttctttggcttcaacggtaa |
340 |
Q |
| |
|
||| ||||||||||||||||| ||||| |
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|
| T |
26785020 |
ttatgccttctttggcttcaatggtaa |
26784994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 340
Target Start/End: Complemental strand, 26791329 - 26791197
Alignment:
| Q |
208 |
ttttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatc |
307 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||| ||||||||| | |||||||| |||| ||||||| || ||||||||||| || || |
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|
| T |
26791329 |
ttttccctatgtttttagtgaatgcaaatgaatgtttaatgacgaggatgcaacaaatgtcacttgattaccattttaaggtggaacaagaagtagggtc |
26791230 |
T |
|
| Q |
308 |
ttcctcttacgccttctttggcttcaacggtaa |
340 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||| |
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|
| T |
26791229 |
ttccacttatgccttctttggcttcaatggtaa |
26791197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 41546623 - 41546664
Alignment:
| Q |
228 |
aatgcggatgaatgtttaatgacaaggatgcaagagatgtca |
269 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||||||| |
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|
| T |
41546623 |
aatgctgatgaatgcttaatgacaagaatgcaagagatgtca |
41546664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 219 - 341
Target Start/End: Original strand, 41919467 - 41919589
Alignment:
| Q |
219 |
tttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacg |
318 |
Q |
| |
|
|||| ||||||| ||||||||||| | ||||| || ||||||||||||||||| |||| |||||||| || ||||||||||| || |||||| |||| | |
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|
| T |
41919467 |
ttttcagtgaattcggatgaatgtatgatgactagaatgcaagagatgtcactagattaccattttactgtggaacaagaagtggggtcttccacttatg |
41919566 |
T |
|
| Q |
319 |
ccttctttggcttcaacggtaaa |
341 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
41919567 |
ccttctttggcttcaacggtaaa |
41919589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 340
Target Start/End: Complemental strand, 20237408 - 20237292
Alignment:
| Q |
224 |
agtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttc |
323 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||||||||||||| | |||| ||||| |||||||| |||||||||||||| | || | || ||| |
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| T |
20237408 |
agtgaatgcaaatgaatgtttgttgacaagaatgcaagagatgtctttggattaccatttcacagttgagcaagaagttggatcagctactcatgctttc |
20237309 |
T |
|
| Q |
324 |
tttggcttcaacggtaa |
340 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
20237308 |
tttggcttcaatggtaa |
20237292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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