View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_14 (Length: 493)
Name: NF6339_low_14
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 5365515 - 5365046
Alignment:
| Q |
18 |
ctttctgatttgaattttttggatttagatattaaagaagatgaagctttagctgttaattgtgttaatgctttgcattcagtaacagttggcaatggta |
117 |
Q |
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| T |
5365515 |
ctttctgatttgaattttttggatttagatattaaagaagatgaagctttagctgttaattgtgttaatgctttgcattcagtaacagttggcaatggta |
5365416 |
T |
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| Q |
118 |
atggtaacggtaataaccgtcgtgactcgttgatagcttcgttgatcgcgttgcggcctaggatagtaacaatggttgaagaggaggctgatttaaattt |
217 |
Q |
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| T |
5365415 |
atggtaacggtaataaccgtcgtgactcgttgatagcttcgttgatcgcgttgcggcctaggatagtaacaatggttgaagaggaggctgatttaaattt |
5365316 |
T |
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| Q |
218 |
tggtaatgaaggatatgaatttgtaaatggttttgaagagtgtttaaggtggtttagggtttactttgaagcattagaagagagttttccgaagacgagt |
317 |
Q |
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| T |
5365315 |
tggtaatgaaggatatgaatttgtgaatggttttgaagagtgtttaaggtggtttagggtttactttgaagcattagaagagagttttccgaagacgagt |
5365216 |
T |
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| Q |
318 |
aacgagcgtttgatgcttgaaagggaagcagggagaggaatagttgatttggtggcatgtgctccggcggagtcgattgaacggagagaaactgcggtga |
417 |
Q |
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| T |
5365215 |
aacgagcgtttgatgcttgaaagggaagcagggagagggatagttgatttggtggcatgtgctccggcggagtcgattgaacggagagaaactgcggtga |
5365116 |
T |
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| Q |
418 |
ggtggtcacggcgtttgcatggtcgagggtttaatacggtggcgtttagtgaggaagtttgtgatgatgt |
487 |
Q |
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| T |
5365115 |
ggtggtcacggcgtttgcatggtcgagggtttaatacggtggcgtttagtgaggaagtttgtgatgatgt |
5365046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 246 - 487
Target Start/End: Original strand, 39988026 - 39988267
Alignment:
| Q |
246 |
ggttttgaagagtgtttaaggtggtttagggtttactttgaagcattagaagagagttttccgaagacgagtaacgagcgtttgatgcttgaaagggaag |
345 |
Q |
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|||||| ||||||||||||| |||||||||||||| ||||||||| | || || |||||| | | || |||| ||| | |||||||| ||||| |||| |
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| T |
39988026 |
ggttttaaagagtgtttaagatggtttagggtttattttgaagcacttgatgaaagtttttcaagaacaagtagtgagaggttgatgctagaaagagaag |
39988125 |
T |
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| Q |
346 |
cagggagaggaatagttgatttggtggcatgtgctccggcggagtcgattgaacggagagaaactgcggtgaggtggtcacggcgtttgcatggtcgagg |
445 |
Q |
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| T |
39988126 |
ctgggagaggtattgttgatttggttgcttgtgatccttatgagtcagtggagagacgtgaaacggcggcgcggtggaggaggaggttgcatggtggcgg |
39988225 |
T |
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| Q |
446 |
gtttaatacggtggcgtttagtgaggaagtttgtgatgatgt |
487 |
Q |
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| T |
39988226 |
gtttaatacggtgtcgtttagtgatgaagtttgtgatgatgt |
39988267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 39987840 - 39987868
Alignment:
| Q |
39 |
gatttagatattaaagaagatgaagcttt |
67 |
Q |
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| T |
39987840 |
gatttagatattaaagaagatgaagcttt |
39987868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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