View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_15 (Length: 480)
Name: NF6339_low_15
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 4 - 467
Target Start/End: Original strand, 2366208 - 2366671
Alignment:
| Q |
4 |
atgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggag |
103 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
2366208 |
atgcagtatccagaccctcatttcaagaaaaaacatcataaaagaagaggtctgcagaagcctttggttggtgctattgtcgataatttatctccagggg |
2366307 |
T |
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| Q |
104 |
gacaggtatattttctgcatgctctaatataagttcactactcctttgattgttcattatgtcaattcaaatttatctttggttgttgattatggcaact |
203 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2366308 |
gacatgtatattttctgcatgctctaatataagtt-actactcctttgattgttcattatgtcaattcaaatttatctttggttgttgattatggcaact |
2366406 |
T |
|
| Q |
204 |
cttaaagaagaatgccattgagaaaaaccataatgaagtcggg-attatgtgactacgaataggaagtgtggaacttccaagatatactgatattccatg |
302 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2366407 |
cttaaagaagaatgccgttgagaaaaaccataatgaagtcggggattatgtgactacgaataggaagtgtggaacttccaagatatgctgatattccatg |
2366506 |
T |
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| Q |
303 |
cctggacaagacttgagagattcttctgaagggaatgaagtaacagtgcatgtttgtgtaccagaagaagcagatgtgattgatctgttaaagcttgagt |
402 |
Q |
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| T |
2366507 |
cctggacaagacttgagagattcttctgaagggaatgaagtaacagtgcatgtttgtgtaccaaaagaagcagatgtgattgatttgttaaagcttgagt |
2366606 |
T |
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| Q |
403 |
gcaaccttgtccattccatgccagacatatatggaatggaaaaacagtacaattcacatgagaaa |
467 |
Q |
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| T |
2366607 |
gcaaccttgtccattccatgcctgacatatatggaatggaaaaacagtacaaatcacatgagaaa |
2366671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 2362041 - 2362171
Alignment:
| Q |
4 |
atgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggag |
103 |
Q |
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||||||| ||||||||||||||| ||||||||| || |||||||||||| | |||| ||||||||||||||| ||||||| ||||||||||||||||| | |
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| T |
2362041 |
atgcagtgtccagaccctcatttaaagaaaaaatatcataaaagaagagttttgcaaaagcctttggttggcactattgtagataatttatctccagggg |
2362140 |
T |
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| Q |
104 |
gacaggtatattttctgcatgctctaatata |
134 |
Q |
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| T |
2362141 |
gacaggtatattttctgcatgctctaatata |
2362171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 2354058 - 2354180
Alignment:
| Q |
4 |
atgcagtatccagaccctcatttcaagaaaaaacattataaaagaagaggtctgcagaagcctttggttggcgctattgtcgataatttatctccaggag |
103 |
Q |
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||||||| |||||||||||||||||||||||||||| |||| ||||| | | ||||||||||||||||||| |||||||| |||||||||||||| || | |
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| T |
2354058 |
atgcagtgtccagaccctcatttcaagaaaaaacatcataagagaagggttttgcagaagcctttggttggtgctattgtagataatttatctcctgggg |
2354157 |
T |
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| Q |
104 |
gacaggtatattttctgcatgct |
126 |
Q |
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||||||||||||||||| ||||| |
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| T |
2354158 |
gacaggtatattttctgtatgct |
2354180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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