View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_16 (Length: 474)
Name: NF6339_low_16
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 467
Target Start/End: Original strand, 43748597 - 43749057
Alignment:
| Q |
9 |
acatactttcctatgcacggacaaaattcagtctattttctcgtatatcgattcattaggcttgtctggaattgagaactacagactcatatcaaatttt |
108 |
Q |
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| T |
43748597 |
acatactttcctatgcacggacaaaattcagtctattttctcgtatatcgattcattaggcttgtctggaattgagaactacagactcatatcaaatttt |
43748696 |
T |
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| Q |
109 |
cctagaagggtttatggtgttgatcaaatgagaatgactctcaaagatgttggcttgtatcctaaagctagtttgttcttggagcctttgtgaagaggag |
208 |
Q |
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| T |
43748697 |
cctagaagggtttatggtgttgatcaaatgagaatgactctcaaagatgttggcttgtatcctaaagctagtttgttcttggagcctttgtgaagaggag |
43748796 |
T |
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| Q |
209 |
tctcataaccatgctaacatgcacatgtacttagtgccaaacatatatttatttggattcctagtgaatcaaaatgaa--gggnnnnnnnttatgttgat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
43748797 |
tctcataaccatgctaacatgcacatgtacttagtgccaaacatatatttatttggattcctagtgaatcaaaatgaagggggaaaaaaattatgttgat |
43748896 |
T |
|
| Q |
307 |
ataagctataagcctagtaattgtttctactctctatgcaacaaatgtggcatcaattgcagttttggtcttcatatttttatcggtttaccgaattgat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
43748897 |
ataagctataagcctagtaattgtttctactctctatgcaacaaatgtggcatcaattgcagttttgatcttcatatttttatcgatttaccgaattgat |
43748996 |
T |
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| Q |
407 |
cctcctttttcaaatcaaattttttgtctcgcaactcaaatttttaaaacaatgatgatgt |
467 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
43748997 |
cctccttttttaaatcaaattttttgtctctcaactcaaatttttaaaacaatgataatgt |
43749057 |
T |
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