View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_17 (Length: 472)
Name: NF6339_low_17
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 3522086 - 3522549
Alignment:
| Q |
1 |
ttagctatagaggagggaaaagtgcactatgatcataaccttgacaatactgaaaagataattgaatcgatagaagatgcgggattttgagcagagctta |
100 |
Q |
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| T |
3522086 |
ttagctttagaggaggcaaaagtgcactatgatcctaaccttgccaatcctgaaaagataattgaatcgatagaagatgcgggatttggagcagagctta |
3522185 |
T |
|
| Q |
101 |
ttagctatggtaatgacgtaaataaagtgaatcttaaagttgaagggatttattctgaagaagatgctaatgtcttggtgtcttatcttgagttagttgc |
200 |
Q |
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| T |
3522186 |
ttagctctgggaatgacgcaaataaagttcatcttaaagttgaagggattgattctgaagaagatgctaatgtcttggtgtcttatcttgagttagttgc |
3522285 |
T |
|
| Q |
201 |
gggtgtaaaccgtgttgaaattgacttttcagaacgtatagttacggttagctatgttcccgatattacaggtccgagaactctcattcattgtgttcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3522286 |
gggtgtaaaccgtgttgaaattgacttttcagaacgtatagttacggttagctatgttcccgatattacaggtccgagaactctcattcaatgtgttcaa |
3522385 |
T |
|
| Q |
301 |
gaagctagccgtggctccaaggtgtatcgagcaactttgtattctccttcggggcgaagagaaagggataaggttaatgaaattcacatgtatagggatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522386 |
gaagctagccgtggctccaaggtgtatcgagcaactttgtattctccttcggggcgaagagaaagggataaggttaatgaaattcacatgtatagggatc |
3522485 |
T |
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| Q |
401 |
agtttttgttaagctgcttgttttctgttcctgtttttgtgtttgccatggtgcttcctatgct |
464 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3522486 |
agtttttgttaagctgcttgttttctgttcccgtttttgtgtttgccatggtgcttcctatgct |
3522549 |
T |
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