View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_18 (Length: 448)
Name: NF6339_low_18
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 4953512 - 4953746
Alignment:
| Q |
19 |
catgttactatcctataaaattttatgaggttgaatgtcacaatgaaaaatggtacattttgttcctgtgtgaagatagtgtactccacatgctgctcca |
118 |
Q |
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| T |
4953512 |
catgttactatccaataaaattttatgaggttgaatgtcacaatgaaaaatggtacgttttgttcctgtgtgaagatagtgtactccacatgctgctcca |
4953611 |
T |
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| Q |
119 |
atgcaaatttttagcctttgtttccatgtaagaggttcaattttcatgccactattatgtacacaacaaagatgattatagagagaaccattggaattat |
218 |
Q |
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| T |
4953612 |
atgcaaatttttagcctttgtttccatgtaagaggttcaattttcatgccactattatgtacacaacaaagatgattatagagagaaccattggaattat |
4953711 |
T |
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| Q |
219 |
aatcatacacaataatcttctcatctttatggtcacaat |
257 |
Q |
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| T |
4953712 |
aatcat----aataatcttctcatctttatggtcacaat |
4953746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 306 - 448
Target Start/End: Original strand, 4953743 - 4953885
Alignment:
| Q |
306 |
caatttcattcttaaactctcttaannnnnnnatctgtaattggataaactcgtttgattatgacattataatcaataataccattatattggagacaac |
405 |
Q |
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| T |
4953743 |
caatttcattcttaaactctcttaatttttttatctgtaattggataaactcgtttgattatgacattataatcaataataccattatattggagacaac |
4953842 |
T |
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| Q |
406 |
ctttgtacactatacctaggtttccacttccaattattcgatt |
448 |
Q |
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| T |
4953843 |
ctttgtacactatacctaggtttccacttccaattattcgatt |
4953885 |
T |
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