View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_19 (Length: 443)
Name: NF6339_low_19
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 188 - 435
Target Start/End: Complemental strand, 41342995 - 41342753
Alignment:
| Q |
188 |
tactaactagcagttgataatatgacgtgcatgcctagattgaagtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcatt |
287 |
Q |
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| T |
41342995 |
tactaacttgcagttgataat--gacgtgcatgcctagattgatgtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcatt |
41342898 |
T |
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| Q |
288 |
attattattactaggtaaagtatccttctgcattgagctcgtttgatagattgatgaaagctgccattgggaaaaggatcgtcgtatttttagattatga |
387 |
Q |
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| T |
41342897 |
attatta---ctaggtaaagcacccttctgcattgagctcgtttgatagattgatgaaagctgccattgggaaaaggatcgtcgtatttttagattatga |
41342801 |
T |
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| Q |
388 |
tggtaccttatcacccattgtaaatgaccctgatcgtgctttcatgtc |
435 |
Q |
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| T |
41342800 |
tggtaccttatcacccattgtaaatgaccctgatcgtgctttcatgtc |
41342753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 41343231 - 41343037
Alignment:
| Q |
1 |
tcacacaatctgagttaccaatttgatatcggacggacggcacaaatcaattacatagtcttcggaaaattcattccacgtttcttgtgaacagacaaac |
100 |
Q |
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| T |
41343231 |
tcacacaatctgagttaccaatttgatatcggacggacggcacaaatcaattacataatcttcagaaaattcattccacgtttcttgtgaacagacaaac |
41343132 |
T |
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| Q |
101 |
atgtacacaaga-----aaatgatttttatgttgaaattatacgtgtatatcgacatattattttaaagttatatataaatgtacattacattac |
190 |
Q |
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| T |
41343131 |
atgtacacaagaaaattaaatgatttttatgttgaaattatacgtgtatatcgacatattattttaaagttatatataaatgtacattacattac |
41343037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 37980133 - 37980072
Alignment:
| Q |
374 |
tttttagattatgatggtaccttatcacccattgtaaatgaccctgatcgtgctttcatgtc |
435 |
Q |
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| T |
37980133 |
tttttggactatgatggtactttgtcacctattgtcgatgaccctgaccgtgctttcatgtc |
37980072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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