View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_2 (Length: 745)
Name: NF6339_low_2
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 324 - 727
Target Start/End: Complemental strand, 7089776 - 7089372
Alignment:
| Q |
324 |
aagcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttattttgtttttcagcctggtccaagagacaatccaattcagtgtttt |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089776 |
aagcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttattttgtttttcagcctggtccaagagacaatccaattcagtgtttt |
7089677 |
T |
|
| Q |
424 |
atcaagagggaaagggctacttctacatatagtttatatcttggtctaagccctggtaagattgtagtgctcacatgaaattactctctatttggtaaca |
523 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089676 |
attaagagggaaagggctacttctacatatagtttatatcttggtctaagccctggtaagattgtagtgctcacatgaaattactctctatttggtaaca |
7089577 |
T |
|
| Q |
524 |
aaattttgttggaatttttgtaaaataatactaagacttctctttgaatcaaatgaagtatgtagttgttaaaaattgaattaccttcttttaggc-nnn |
622 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7089576 |
aaattttgttggaatttttttaaaataatactaagacttctctttgaatcaaatgaagtatgtagttgttaaaacttgaattaccttcttttaggctttt |
7089477 |
T |
|
| Q |
623 |
nnnngtagtattctttttcatctttctgttttccagagtaaagttacaattcaatcattaaactgttaccttatctcttattcagtccctaaagtatgga |
722 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089476 |
ttttgtagtattctttttcatctttctgttttccagagtaaacttacaattcaatcattaaactgttaccttatctcttattcagtccctaaagtatgga |
7089377 |
T |
|
| Q |
723 |
aatgt |
727 |
Q |
| |
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||||| |
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| T |
7089376 |
aatgt |
7089372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 7090031 - 7089827
Alignment:
| Q |
64 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7090031 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgtgcacttgtag |
7089932 |
T |
|
| Q |
164 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089931 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
7089832 |
T |
|
| Q |
264 |
ggtaa |
268 |
Q |
| |
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||||| |
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| T |
7089831 |
ggtaa |
7089827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 324 - 584
Target Start/End: Complemental strand, 7669606 - 7669346
Alignment:
| Q |
324 |
aagcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttattttgtttttcagcctggtccaagagacaatccaattcagtgtttt |
423 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7669606 |
aagcttggaagcacatggtgtatggtactaaatgtgttattactttgtcttttattttgtttttcagccttgtccaagagacaatccaattcagtgtttt |
7669507 |
T |
|
| Q |
424 |
atcaagagggaaagggctacttctacatatagtttatatcttggtctaagccctggtaagattgtagtgctcacatgaaattactctctatttggtaaca |
523 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
7669506 |
atcaagagagaaagggcgacttctacatatagtttatatcttggtctaagccctggtaagattgttgtgctcacatgaaattattctctatttgataaca |
7669407 |
T |
|
| Q |
524 |
aaattttgttggaatttttgtaaaataatactaagacttctctttgaatcaaatgaagtat |
584 |
Q |
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|||||||||| | |||||| |||||| | || ||| ||||||||||||||||| |||||| |
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| T |
7669406 |
aaattttgtttggatttttctaaaatcacaccaaggtttctctttgaatcaaattaagtat |
7669346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 64 - 268
Target Start/End: Complemental strand, 7669857 - 7669653
Alignment:
| Q |
64 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
163 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
7669857 |
cagagtcaatgggctaacttacctcctgagttactattagacataattcaaagggtggaagctagtgaaaccacttggccatctctccgcgcacttgtag |
7669758 |
T |
|
| Q |
164 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
263 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7669757 |
cttgtgcctcagtttgtagattgtggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcattgaagca |
7669658 |
T |
|
| Q |
264 |
ggtaa |
268 |
Q |
| |
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||||| |
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|
| T |
7669657 |
ggtaa |
7669653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 583 - 678
Target Start/End: Complemental strand, 7668888 - 7668793
Alignment:
| Q |
583 |
atgtagttgttaaaaattgaattaccttcttttaggcnnnnnnngtagtattctttttcatctttctgttttccagagtaaagttacaattcaatc |
678 |
Q |
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||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||| || || |||||||||| |
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| T |
7668888 |
atgtagttgttaaaacttgaaataccctcttttaggttttttttgtagtattctttttcatccttctgttttccagagtgaactttcaattcaatc |
7668793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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