View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_21 (Length: 423)
Name: NF6339_low_21
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_21 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 213 - 362
Target Start/End: Complemental strand, 42519560 - 42519411
Alignment:
| Q |
213 |
aacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagcatgtg |
312 |
Q |
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| T |
42519560 |
aacacaatggctggaggttacatagcacaaggctctggaaaagaatatccaggaaaattcaccattagggtgttcatcatttgcatgactgcagcatgtg |
42519461 |
T |
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| Q |
313 |
gaggcttaatctttggttatgatcttggcatttcaggtacaatattctaa |
362 |
Q |
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| T |
42519460 |
gaggcttaatctttggttatgatcttggcatttcaggtacaatattctaa |
42519411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 42519764 - 42519628
Alignment:
| Q |
10 |
aagaatatatgttattattttaaacttttgatcgaaatatggatgagcatctatattaactcaagttgtttattttgtcgataaataaaaacttagctgt |
109 |
Q |
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| T |
42519764 |
aagaatatatgttattattttaaacttttgatagaaatatggatgagcatctatattaactcaagttgtttattttgtcgataaataaaaacttagctgt |
42519665 |
T |
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| Q |
110 |
ttatataataaaaatacctgacagcatatatctaaac |
146 |
Q |
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| T |
42519664 |
ttatataataaaaatacctgacagcatatatctaaac |
42519628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 208 - 360
Target Start/End: Complemental strand, 1241333 - 1241181
Alignment:
| Q |
208 |
gaaagaacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagc |
307 |
Q |
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| T |
1241333 |
gaaagaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagc |
1241234 |
T |
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| Q |
308 |
atgtggaggcttaatctttggttatgatcttggcatttcaggtacaatattct |
360 |
Q |
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| T |
1241233 |
atttgaaggcttaatcttcggctatgatcttggcctttcaggtacaatattct |
1241181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 1241567 - 1241520
Alignment:
| Q |
21 |
ttattattttaaacttttgatcgaaatatggatgagcatctatattaa |
68 |
Q |
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| T |
1241567 |
ttattattttaaacttttgatcgaaatatggatgagcatctatattaa |
1241520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 208 - 360
Target Start/End: Complemental strand, 270 - 118
Alignment:
| Q |
208 |
gaaagaacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagc |
307 |
Q |
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| T |
270 |
gaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagc |
171 |
T |
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| Q |
308 |
atgtggaggcttaatctttggttatgatcttggcatttcaggtacaatattct |
360 |
Q |
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| T |
170 |
atttggaggcttaatcttcggctatgatcttggcatttcaggtacaatattct |
118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 208 - 360
Target Start/End: Complemental strand, 41972962 - 41972810
Alignment:
| Q |
208 |
gaaagaacacaatggctggaggttacgtagcacaaggctctggaaaagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagc |
307 |
Q |
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| T |
41972962 |
gaaacaacacaatggctggaggttacatagcacatggctctgaaaaagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagc |
41972863 |
T |
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| Q |
308 |
atgtggaggcttaatctttggttatgatcttggcatttcaggtacaatattct |
360 |
Q |
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| T |
41972862 |
atttggaggcttaatcttcggctatgatcttggcatttcaggtacaatattct |
41972810 |
T |
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