View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_low_23 (Length: 395)

Name: NF6339_low_23
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_low_23
NF6339_low_23
[»] chr4 (2 HSPs)
chr4 (1-391)||(14291013-14291403)
chr4 (1-391)||(14307062-14307452)
[»] chr8 (1 HSPs)
chr8 (43-150)||(13029722-13029829)
[»] chr6 (3 HSPs)
chr6 (27-159)||(12646604-12646736)
chr6 (43-119)||(27853476-27853552)
chr6 (266-391)||(27853699-27853824)
[»] chr2 (3 HSPs)
chr2 (278-384)||(176778-176884)
chr2 (346-390)||(35136043-35136087)
chr2 (346-390)||(40327457-40327501)
[»] chr1 (4 HSPs)
chr1 (284-390)||(43297652-43297758)
chr1 (56-150)||(50237099-50237193)
chr1 (86-152)||(23464857-23464923)
chr1 (338-390)||(50237381-50237433)
[»] chr3 (2 HSPs)
chr3 (66-150)||(38647726-38647810)
chr3 (86-156)||(55025366-55025436)
[»] chr7 (3 HSPs)
chr7 (44-103)||(23208391-23208450)
chr7 (80-114)||(1354282-1354316)
chr7 (86-152)||(16770528-16770594)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 14291403 - 14291013
Alignment:
Q  1 tattggagtgtcagagagagcagggacaaaataacatgtttcgaaggctgttttgaccaattggaaaatgtcttcacccactatatgccaatattgtttg 100  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14291403 tattagagtgtcagagagagcagggtcaaaataacatgtttcgaaggctgttttgaccaattggaaaatgtcttcacccactatatgccaatattgtttg 14291304  T
Q  101 aaggaaatgcattgcaaaccctctgcgcctgatgctttgtaaggtttcatagtgtttagagctgcggttacctctgccttagtgattgggttggttaaag 200  Q
    ||| |||||||||| ||||| |||| ||| || | ||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  14291303 aagaaaatgcattgaaaaccatctgggccagaggatttgtaaagtttcatagagttcagagctgcggttacctctgccttagtgattgggttggttaaag 14291204  T
Q  201 aagttatatcctgaacatcaatggttgggtgggtaccttctagggtaaggttgttgttattgtgttggttgttgcaaaaaaggtttttgaagaatcgttg 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14291203 aagttatatcttgaacatcaatggttgggtgggtaccttctagggtaaggttgttgttattgtgttggttgctgcaaaaaaggtttttgaagaatcgttg 14291104  T
Q  301 agcctcttcttggagagttgagctatcagtggaccagataccatttgggagctgaagcctatgaattttgtttctttttcttctgatgatg 391  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14291103 agcctcttcttggagagttgagctatcagtggaccagataacatttgggagctgaagcctatgaattttgtttctttttcttctgatgatg 14291013  T

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Target: chr4; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 14307452 - 14307062
Alignment:
Q  1 tattggagtgtcagagagagcagggacaaaataacatgtttcgaaggctgttttgaccaattggaaaatgtcttcacccactatatgccaatattgtttg 100  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14307452 tattagagtgtcagagagagcagggtcaaaataacatgtttcgaaggctgttttgaccaattggaaaatgtcttcacccactatatgccaatattgtttg 14307353  T
Q  101 aaggaaatgcattgcaaaccctctgcgcctgatgctttgtaaggtttcatagtgtttagagctgcggttacctctgccttagtgattgggttggttaaag 200  Q
    ||| |||||||||| ||||| |||| ||| || | ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  14307352 aagaaaatgcattgaaaaccatctgggccagaggatttgtaaggtttcatagagttcagagctgcggttacctctgccttagtgattgggttggttaaag 14307253  T
Q  201 aagttatatcctgaacatcaatggttgggtgggtaccttctagggtaaggttgttgttattgtgttggttgttgcaaaaaaggtttttgaagaatcgttg 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  14307252 aagttatatcttgaacatcaatggttgggtgggtaccttctagggtaaggttgttgttattgtgtcggttgctgcaaaaaaggtttttgaagaatcgttg 14307153  T
Q  301 agcctcttcttggagagttgagctatcagtggaccagataccatttgggagctgaagcctatgaattttgtttctttttcttctgatgatg 391  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14307152 agccttttcttggagagttgagctatcagtggaccagataccatttgggagctgaagcctatgaattttgtttctttttcttctgatgatg 14307062  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 13029829 - 13029722
Alignment:
Q  43 gaaggctgttttgaccaattggaaaatgtcttcacccactatatgccaatattgtttgaaggaaatgcattgcaaaccctctgcgcctgatgctttgtaa 142  Q
    |||||||||||||||||  |||||||||||||| |||||||| |||||||||||||||||| || ||||||  ||||| || | |||||  ||  |||||    
T  13029829 gaaggctgttttgaccatctggaaaatgtcttcccccactatgtgccaatattgtttgaagaaactgcatttaaaaccatcagggcctggagccgtgtaa 13029730  T
Q  143 ggtttcat 150  Q
    ||||||||    
T  13029729 ggtttcat 13029722  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 12646604 - 12646736
Alignment:
Q  27 caaaataacatgtttcgaaggctgttttgaccaattggaaaatgtcttcacccactatatgccaatattgtttgaaggaaatgcattgcaaaccctctgc 126  Q
    |||||||||||||   ||| |||| ||| || | ||||||||| ||||| |||||||||||||||||||| |||||| |||||| ||| || || || |     
T  12646604 caaaataacatgtgaggaaagctgatttcacaagttggaaaatatcttctcccactatatgccaatattgcttgaagaaaatgctttggaagccatccgg 12646703  T
Q  127 gcctgatgctttgtaaggtttcatagtgtttag 159  Q
    ||| | |||||||||||||||||| | ||||||    
T  12646704 gccaggtgctttgtaaggtttcatggagtttag 12646736  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 27853476 - 27853552
Alignment:
Q  43 gaaggctgttttgaccaattggaaaatgtcttcacccactatatgccaatattgtttgaaggaaatgcattgcaaac 119  Q
    |||||||||||| ||||| |||||||||||||| ||||||| |||| ||||||| || ||| |||| ||||| ||||    
T  27853476 gaaggctgttttaaccaactggaaaatgtcttcccccactacatgctaatattgcttaaagaaaatacattgaaaac 27853552  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 27853699 - 27853824
Alignment:
Q  266 tggttgttgcaaaaaaggtttttgaagaatcgttgagcctcttcttggagagttgagctatcagtggaccagataccatttgggagctgaagcctatgaa 365  Q
    ||||||||||| ||||| ||||| ||| | ||||||||||| | ||| ||| | |||   ||| | ||||| |||||||| || |||||||||   ||||    
T  27853699 tggttgttgcataaaagatttttaaagtaacgttgagcctcattttgaagaatggagtcgtcattagaccaaataccattgggaagctgaagctagtgaa 27853798  T
Q  366 ttttgtttctttttcttctgatgatg 391  Q
    || | ||||| |||||||||||||||    
T  27853799 ttctatttctctttcttctgatgatg 27853824  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 176884 - 176778
Alignment:
Q  278 aaaaggtttttgaagaatcgttgagcctcttcttggagagttgagctatcagtggaccagataccatttgggagctgaagcctatgaattttgtttcttt 377  Q
    ||||| |||||||| |||| |||||| |||||||| || || ||| |||||||||||||| | ||||| || |||||||||||||| ||| |||| ||||    
T  176884 aaaagatttttgaaaaatctttgagcttcttcttgaagggtagagttatcagtggaccagttgccattaggaagctgaagcctatggattatgttccttt 176785  T
Q  378 ttcttct 384  Q
    | |||||    
T  176784 tccttct 176778  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 35136043 - 35136087
Alignment:
Q  346 tgggagctgaagcctatgaattttgtttctttttcttctgatgat 390  Q
    |||||| || || ||||||||| ||||||||||||||||||||||    
T  35136043 tgggagttggagtctatgaattatgtttctttttcttctgatgat 35136087  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 40327501 - 40327457
Alignment:
Q  346 tgggagctgaagcctatgaattttgtttctttttcttctgatgat 390  Q
    |||||| || || ||||||||| ||||||||||||||||||||||    
T  40327501 tgggagttggagtctatgaattctgtttctttttcttctgatgat 40327457  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 390
Target Start/End: Complemental strand, 43297758 - 43297652
Alignment:
Q  284 tttttgaagaatcgttgagcctcttcttggagagttgagctatcagtggaccagataccatttgggagctgaagcctatgaattttgtttctttttcttc 383  Q
    ||||||||| ||  |||||| |||||||||||  | |||||||||| || ||| || |||||||| || ||||||||||| ||| | ||||| |||||||    
T  43297758 tttttgaagtatttttgagcttcttcttggaggatagagctatcagaggtccatatgccatttggaagttgaagcctatggattctatttctctttcttc 43297659  T
Q  384 tgatgat 390  Q
    |||||||    
T  43297658 tgatgat 43297652  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 50237099 - 50237193
Alignment:
Q  56 accaattggaaaatgtcttcacccactatatgccaatattgtttgaaggaaatgcattgcaaaccctctgcgcctgatgctttgtaaggtttcat 150  Q
    ||||| || |||||||| ||||| || || |||||||||||||||||| ||||||| || || || ||||  || | ||||||||||||||||||    
T  50237099 accaaatgtaaaatgtcatcaccaacaatgtgccaatattgtttgaagaaaatgcaatggaagccatctggtccaggtgctttgtaaggtttcat 50237193  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 23464923 - 23464857
Alignment:
Q  86 tgccaatattgtttgaaggaaatgcattgcaaaccctctgcgcctgatgctttgtaaggtttcatag 152  Q
    ||||| |||||||||||  |||||||||| || || ||||  |||| ||||||||||||||||||||    
T  23464923 tgccagtattgtttgaaaaaaatgcattggaagccatctggtcctggtgctttgtaaggtttcatag 23464857  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 50237381 - 50237433
Alignment:
Q  338 ataccatttgggagctgaagcctatgaattttgtttctttttcttctgatgat 390  Q
    ||||||||||| || || |||||||||||| ||||||| |||||||| |||||    
T  50237381 ataccatttggaagttggagcctatgaattatgtttctctttcttctaatgat 50237433  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 38647726 - 38647810
Alignment:
Q  66 aaatgtcttcacccactatatgccaatattgtttgaaggaaatgcattgcaaaccctctgcgcctgatgctttgtaaggtttcat 150  Q
    ||||||| || || ||||| |||||||||||||||||| | || || || ||||| |||| ||| | ||||||||||||||||||    
T  38647726 aaatgtcatctccgactatgtgccaatattgtttgaagaagatacaatggaaaccatctgggccgggtgctttgtaaggtttcat 38647810  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 55025366 - 55025436
Alignment:
Q  86 tgccaatattgtttgaaggaaatgcattgcaaaccctctgcgcctgatgctttgtaaggtttcatagtgtt 156  Q
    |||||||||||||||||  | |||||||| ||||| |||| ||| |  ||||||||||||||||| |||||    
T  55025366 tgccaatattgtttgaaaaatatgcattggaaaccatctgggccaggagctttgtaaggtttcatggtgtt 55025436  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 23208391 - 23208450
Alignment:
Q  44 aaggctgttttgaccaattggaaaatgtcttcacccactatatgccaatattgtttgaag 103  Q
    |||||||||| |||||  ||||| ||||| || || ||||||||||||||||||||||||    
T  23208391 aaggctgtttggaccatatggaagatgtcgtctccaactatatgccaatattgtttgaag 23208450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 1354282 - 1354316
Alignment:
Q  80 actatatgccaatattgtttgaaggaaatgcattg 114  Q
    |||||||||||||||||||||||| ||||||||||    
T  1354282 actatatgccaatattgtttgaagaaaatgcattg 1354316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 16770528 - 16770594
Alignment:
Q  86 tgccaatattgtttgaaggaaatgcattgcaaaccctctgcgcctgatgctttgtaaggtttcatag 152  Q
    ||||| |||||||||||  |||||||||| ||||| || |  |||| ||||||||||||||||||||    
T  16770528 tgccagtattgtttgaaaaaaatgcattggaaaccatccggacctggtgctttgtaaggtttcatag 16770594  T

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