View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_24 (Length: 392)
Name: NF6339_low_24
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 30480500 - 30480689
Alignment:
| Q |
1 |
ttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatggagttaaaaga |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |
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| T |
30480500 |
ttcaaagagaaataaatggctcctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatctactaaaatatatggagttaaaaga |
30480599 |
T |
|
| Q |
101 |
tgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggttcagc |
190 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30480600 |
tgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccgaaattatcacctcttatagtttctgtggttcagc |
30480689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 30433035 - 30433205
Alignment:
| Q |
1 |
ttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatggagttaaaaga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30433035 |
ttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactaaaatatatggagttaaaaga |
30433134 |
T |
|
| Q |
101 |
tgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctctt |
171 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| |
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| T |
30433135 |
tgcaaaattcactttgttatcaaataaaacagttgatttcttgttcatatcatccaaaatcatcacctctt |
30433205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 30716561 - 30716372
Alignment:
| Q |
1 |
ttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatggagttaaaaga |
100 |
Q |
| |
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||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
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| T |
30716561 |
ttcaaagcgaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatataaagagttaaaaga |
30716462 |
T |
|
| Q |
101 |
tgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggttcagc |
190 |
Q |
| |
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|| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
30716461 |
tgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagattctgtggttcagc |
30716372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 30680375 - 30680194
Alignment:
| Q |
9 |
gaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatggagttaaaagatgcaaaat |
108 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||||| |
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| T |
30680375 |
gaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatataaagagttaaaagatgtaaaat |
30680276 |
T |
|
| Q |
109 |
tcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggttcagc |
190 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30680275 |
tcactttgttatcaaattaaacggttgatttctcattgatatcatccaaaatcatcacctcttatagtttctgtggttcagc |
30680194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 30056852 - 30057029
Alignment:
| Q |
9 |
gaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatggagttaaaagatgcaaaat |
108 |
Q |
| |
|
||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| |
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| T |
30056852 |
gaaataagtgtcacctgttcagtttcataggagatgctctctgtaagtgatatgactaatgctaatatactaaaatataaagagttaaaagataaaaaat |
30056951 |
T |
|
| Q |
109 |
tcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggtt |
186 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30056952 |
tcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggtt |
30057029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 30203901 - 30204043
Alignment:
| Q |
10 |
aaataaatggcacctgttcagtttcacaggagatg-ctctctgtaagtgatatgaataatgctaatatactgaaatatatggagttaaaagatgcaaaat |
108 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | | |||||||| ||||| ||| |||||||||| | || |||||||||||||||||||||| |||| |
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| T |
30203901 |
aaataaatggcacctgttcagttccacaggaaaaggctctctgttagtgaaatggctaatgctaatctgctataatatatggagttaaaagatgccaaat |
30204000 |
T |
|
| Q |
109 |
tcactttgttatcaaataaaacatttgatttctcattcatatc |
151 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||| |
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| T |
30204001 |
tcactttgttatcaaataaaactgttgatttctcattcgtatc |
30204043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 30396998 - 30397080
Alignment:
| Q |
65 |
taatgctaatatactgaaatatatggagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattca |
147 |
Q |
| |
|
|||||||||| |||| ||||||| | |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
30396998 |
taatgctaatctactaaaatatacgtagttaaaagatggaaaattcactttgttataaaataaaacaattgatttctcattca |
30397080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 40676856 - 40677024
Alignment:
| Q |
1 |
ttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatg-gagttaaaag |
99 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| ||| |||||||| ||| ||||||| | | ||||||||| ||| |||| || ||||| |||| |
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|
| T |
40676856 |
ttcaaacagaaataaatggcacatgttcagttccacgagagatgctatctataagtgaaacaacgaatgctaatcaactaaaattgataagagtttaaag |
40676955 |
T |
|
| Q |
100 |
atgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacct |
168 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||| | ||||||||| |||||| | ||||||| |
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|
| T |
40676956 |
atgcaaatttcactttgctatcaaataaaaatattgatttgttattcatatcctccaaagtcatcacct |
40677024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 30746455 - 30746501
Alignment:
| Q |
144 |
ttcatatcatccaaaattatcacctcttatagtttctgtggttcagc |
190 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
30746455 |
ttcatatcatccaaaatcatcaccttttatagtttctgtggttcagc |
30746501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 30481513 - 30481554
Alignment:
| Q |
299 |
caccgatcagactttgctaatgggtacggagctccgacccat |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30481513 |
caccgatcagactttgctaatgggtacggagctctgacccat |
30481554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 372
Target Start/End: Original strand, 30398564 - 30398632
Alignment:
| Q |
303 |
gatcagactttgctaatgggtacggagctccgacccatgccatgacaatcaaaatcgcaatcctcgatac |
372 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||| || |||||||||||||||||||||| |
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| T |
30398564 |
gatcagactt-gctaatgggcacagagctccgacccatgccccgattgtcaaaatcgcaatcctcgatac |
30398632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 29870368 - 29870428
Alignment:
| Q |
312 |
ttgctaatgggtacggagctccgacccatgccatgacaatcaaaatcgcaatcctcgatac |
372 |
Q |
| |
|
||||||||||| ||| ||||| |||||| ||| | || ||||||||||||||||||||||| |
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|
| T |
29870368 |
ttgctaatgggcacgcagctctgacccacgccctcactatcaaaatcgcaatcctcgatac |
29870428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 20302539 - 20302350
Alignment:
| Q |
1 |
ttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactgaaatatatggagttaaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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|
| T |
20302539 |
ttcaaagagaaataaatggcacctgttcggttacacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatatatggagttaaaaga |
20302440 |
T |
|
| Q |
101 |
tgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccaaaattatcacctcttatagtttctgtggttcagc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
20302439 |
tgcaaaattcactttgttatcaaataaaatggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcagc |
20302350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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