View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_26 (Length: 382)
Name: NF6339_low_26
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 21598087 - 21597731
Alignment:
| Q |
18 |
ctcctcaaccgatcaacagactctcatgaacttctcgtccttcccaaagctagtgaaaatacaatgactcgttgtctcacttggtgggacttaacatggc |
117 |
Q |
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| T |
21598087 |
ctcctaaaccgatcaacagactcccatgaacttctcgtccttcccaaagccagtgaaaatacaatgactcgttgtctcacttggtgggacttaacatggc |
21597988 |
T |
|
| Q |
118 |
tcgctttcggcgctgttgttggctctggtatcttcgtcgttacaggtcaagaagctcgtctcgatgctggtccttccattatcctctcttacgccgcgtc |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21597987 |
tcgctttcggcgctgtcgttggctctggtatcttcgtcgttaccggtcaagaagctcgtttcgatgctggtccttccattatcctctcttacgccgcgtc |
21597888 |
T |
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| Q |
218 |
aggtttctctgctcttctttcagctttaatctacgctgaattcgccgttgaagttcctgttgctggtggctcattttcattcctaagaattgaacttggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
21597887 |
aggtttctctgctcttctttcagctttaatctacgctgaattcgccgttgaagttcctgttgctggtggctcgttttcattccttagaattgaacttggt |
21597788 |
T |
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| Q |
318 |
gattttctcgctttcattgccgctgggaatattctccttgaagctctcgtctgtgct |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21597787 |
gattttctcgctttcattgccgctgggaatattctccttgaagctctcgtcggtgct |
21597731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 182 - 362
Target Start/End: Complemental strand, 11987687 - 11987507
Alignment:
| Q |
182 |
tgctggtccttccattatcctctcttacgccgcgtcaggtttctctgctcttctttcagctttaatctacgctgaattcgccgttgaagttcctgttgct |
281 |
Q |
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|||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |
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| T |
11987687 |
tgctggtccttccattatcctctcctacgccgcttcaggattctcagctcttctttcagctttcatctatgctgaattcgcagttgaagttcccgttgcc |
11987588 |
T |
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| Q |
282 |
ggtggctcattttcattcctaagaattgaacttggtgattttctcgctttcattgccgctgggaatattctccttgaagct |
362 |
Q |
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||||| || |||| |||||||||||| ||||| ||||| || |||||||||||||| || ||||||||||||||||||||| |
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| T |
11987587 |
ggtggttcgttttgattcctaagaatcgaactcggtgacttcctcgctttcattgctgccgggaatattctccttgaagct |
11987507 |
T |
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