View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_27 (Length: 362)
Name: NF6339_low_27
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 25014428 - 25014121
Alignment:
| Q |
20 |
aactctaggaaatccaggacagtttgcttgtgctggaatattcagaaagggttgttttgcaatcaatcttggtatttcaaatgctctctttgctgagcta |
119 |
Q |
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| T |
25014428 |
aactctaagaaatccagggcagtttgcttgtgctggaatattcagaaagggttgttttgcaatcaatcttggtatttcaaatgctctctttgctgagcta |
25014329 |
T |
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| Q |
120 |
at----gggagtgagtattgttgtggaaactgcctatatgaagaattggaattacttatggattgaaagtgattctaaattagcttgtttggcgttcaag |
215 |
Q |
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| T |
25014328 |
attaatgggagtgagtattgctgtggaaactgactatatgaagaattggaatcacttatggattgaaagtgattctaaaatagcttgtttggcgttcaag |
25014229 |
T |
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| Q |
216 |
tctccttatatagtcccttggaaacttaagaacatatggaaaaattgtctactcaaactatcctctattgaatttcataatcacacacatctaatcaaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25014228 |
tctccttatatagtcccttggaaacttaagaacataaggaaaaattgtctactcaaactatcctcta-tgaatttcataatcacacacatctaatcaaat |
25014130 |
T |
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| Q |
316 |
tgttgtttg |
324 |
Q |
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||||||||| |
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| T |
25014129 |
tgttgtttg |
25014121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 66 - 308
Target Start/End: Complemental strand, 33068308 - 33068068
Alignment:
| Q |
66 |
aagggttgttttgcaatcaatcttggtatttcaaatgctctctttgctgagctaatgggagtgagtattgttgtggaaactgcctatatgaagaattgga |
165 |
Q |
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| T |
33068308 |
aagggttgttttgcaatcaatcttggaatttcaaatgctctctttgctaagctaatgggagtgattactgttgtggaaactgcctatatgaagaa-tcga |
33068210 |
T |
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| Q |
166 |
attacttatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacatatggaaaaattgtct |
265 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| || |
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| T |
33068209 |
atcacttatggattgaaagtgattctaaattagcttgcttggcgttcaagtctcctcatatagtgccttggaaacttaagaacagatggaaaaatcccct |
33068110 |
T |
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| Q |
266 |
actcaaactatcctctattgaatttcataatcacacacatcta |
308 |
Q |
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| T |
33068109 |
agtcaaactgtcctata-tgaatttcatgatcacacacatcta |
33068068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 256
Target Start/End: Original strand, 19955154 - 19955338
Alignment:
| Q |
72 |
tgttttgcaatcaatcttggtatttcaaatgctctctttgctgagctaatgggagtgagtattgttgtggaaactgcctatatgaagaattggaattact |
171 |
Q |
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||||||||||||||||| || ||||||||||| || ||| |||||| || |||||||| | | ||| |||||| ||| ||| || || | |||| ||| |
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| T |
19955154 |
tgttttgcaatcaatctaggaatttcaaatgccctttttcctgagccaaagggagtgattttagttttggaaattgcttatgacaaaaactagaatcact |
19955253 |
T |
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| Q |
172 |
tatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacatatggaa |
256 |
Q |
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|||||||||||||||||| || || ||| ||||| |||||||||| | | ||||| |||||||| || ||||| |||||||| |
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| T |
19955254 |
tatggattgaaagtgatttaaagttggctaccttggccttcaagtctcatcacatagttccttggaagctcaagaatatatggaa |
19955338 |
T |
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