View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_low_28 (Length: 351)

Name: NF6339_low_28
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_low_28
NF6339_low_28
[»] chr2 (7 HSPs)
chr2 (188-342)||(19138361-19138515)
chr2 (1-111)||(19138253-19138360)
chr2 (112-190)||(17164592-17164670)
chr2 (112-190)||(36250577-36250655)
chr2 (112-164)||(19877507-19877559)
chr2 (112-190)||(32212942-32213020)
chr2 (112-192)||(24168198-24168278)
[»] chr3 (8 HSPs)
chr3 (112-190)||(24700097-24700175)
chr3 (112-190)||(8485965-8486043)
chr3 (114-190)||(27237964-27238040)
chr3 (129-190)||(54737170-54737231)
chr3 (112-190)||(47425146-47425224)
chr3 (112-163)||(32834615-32834666)
chr3 (112-156)||(25574666-25574710)
chr3 (112-164)||(46225068-46225120)
[»] chr5 (4 HSPs)
chr5 (112-184)||(17042198-17042270)
chr5 (113-192)||(7933407-7933486)
chr5 (113-192)||(34702904-34702982)
chr5 (252-300)||(34693346-34693394)
[»] chr8 (3 HSPs)
chr8 (111-190)||(19177952-19178030)
chr8 (112-192)||(28239295-28239375)
chr8 (121-190)||(12814983-12815053)
[»] chr4 (6 HSPs)
chr4 (112-190)||(5155502-5155580)
chr4 (112-192)||(17722293-17722373)
chr4 (112-190)||(51746198-51746276)
chr4 (112-190)||(2594448-2594526)
chr4 (112-189)||(17641348-17641425)
chr4 (112-180)||(1979391-1979459)
[»] scaffold0234 (1 HSPs)
scaffold0234 (112-190)||(6945-7023)
[»] chr6 (4 HSPs)
chr6 (119-184)||(16548292-16548357)
chr6 (113-190)||(16730436-16730513)
chr6 (112-190)||(21224552-21224629)
chr6 (112-180)||(27966300-27966368)
[»] chr7 (5 HSPs)
chr7 (112-190)||(8981547-8981625)
chr7 (110-190)||(7705932-7706012)
chr7 (112-190)||(31715307-31715385)
chr7 (112-192)||(26263058-26263138)
chr7 (112-192)||(32913690-32913770)
[»] chr1 (2 HSPs)
chr1 (112-192)||(21112740-21112819)
chr1 (112-192)||(21117482-21117562)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 188 - 342
Target Start/End: Original strand, 19138361 - 19138515
Alignment:
Q  188 tgatgaggttctaagcttcaccagaaaatctgcacactagttcccttctattagaatatgagtaatagagacattggtttgagagatgaggtctttaatg 287  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19138361 tgatgaggttctaagcttcatcagaaaatctgcacgctagttcccttctattagaatatgagtaatagagacaatggtttgagagatgaggtctttaatg 19138460  T
Q  288 tcttggattaaaactacatacacctgacaattcacaagggggccattgatgatgt 342  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19138461 tcttggattaaaactacatacatctgacaattcacaagggggccattgatgatgt 19138515  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 19138253 - 19138360
Alignment:
Q  1 cggaacaaaagaggcaaacctactccatatggaaataatttcccgatacatcatcattccttagcagattgaggattctgaatgttacccatgaattagc 100  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||   |||| ||||||||||||||||||||  ||||||||||||||||    
T  19138253 cggaacaaaagaggcaaaactactccatatggaaataagttcccgatacatcat---tcctcagcagattgaggattctgaagattacccatgaattagc 19138349  T
Q  101 aaactagaatc 111  Q
    |||||||||||    
T  19138350 aaactagaatc 19138360  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 17164592 - 17164670
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17164592 cactactacataaatgacatttcacatcggttgaaatcgacatttcacatcgggtggcaaccgatgtaactaaaggtga 17164670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 36250655 - 36250577
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||    
T  36250655 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtga 36250577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 19877559 - 19877507
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 164  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  19877559 cactactacaaaaatgacatttcacatcggttgaaatcgacatttcacatcgg 19877507  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 32212942 - 32213020
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| ||||||||||||||||||||| || ||| ||||| ||| ||||||| |  ||||||||||||||||||||||    
T  32212942 cactactacagaaatgacatttcacatcagtggaattcgactttttacatcgggtcccaaccgatgtaactaaaggtga 32213020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 24168278 - 24168198
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 192  Q
    |||||| | ||||||||||||||||||| || |||||| || ||||||||||| |  || | |||||||| ||||||||||    
T  24168278 cactactatagaaatgacatttcacatcagtggaaatcaacttttcacatcgggtcccaccagatgtaacgaaaggtgatg 24168198  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 24700097 - 24700175
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  24700097 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcggtttccaaccgatgtaactaaaggtga 24700175  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 8485965 - 8486043
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||    
T  8485965 cactactacaaaaatgacatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtga 8486043  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 27238040 - 27237964
Alignment:
Q  114 ctacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||| ||||||||||||| | |||||||||||||||||| ||| ||||| | ||||||||||||||||||| |||||    
T  27238040 ctactacagaaatgacatcttacatcggttgaaatcgacttttaacatcaggtggcaaccgatgtaactaagggtga 27237964  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 54737170 - 54737231
Alignment:
Q  129 catttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    ||||| |||||||||||||||||||||||||||||| |  |||||||||||||||| |||||    
T  54737170 cattttacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaactaagggtga 54737231  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 47425224 - 47425146
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| ||||||||||||||||||||| || |||||| || ||||||||||| |  || ||||||| |||||||||||    
T  47425224 cactactacagaaatgacatttcacatcagtggaaatcaacttttcacatcgggtcccagccgatgtgactaaaggtga 47425146  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 32834615 - 32834666
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcg 163  Q
    |||||| ||||||||||||||||||||||||  |||||||| ||||||||||    
T  32834615 cactactacagaaatgacatttcacatcggtcaaaatcgacttttcacatcg 32834666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 25574710 - 25574666
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacattt 156  Q
    |||||| ||||||||||||||||||||| || |||||||||||||    
T  25574710 cactactacagaaatgacatttcacatcagtggaaatcgacattt 25574666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 46225068 - 46225120
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 164  Q
    |||||| ||| ||||||||||||| |||| | ||||| |||||||||||||||    
T  46225068 cactactacataaatgacatttcatatcgatggaaattgacatttcacatcgg 46225120  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 17042198 - 17042270
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaa 184  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  17042198 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgggtgccaaccgatgtaactaa 17042270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 7933407 - 7933486
Alignment:
Q  113 actacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 192  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||||||||| |   ||||||||| ||||||| |||||    
T  7933407 actactacagaaatgacatttcacatcggttggaatcgatatttcacatcgggtcctaaccgatgtcactaaagatgatg 7933486  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 34702982 - 34702904
Alignment:
Q  113 actacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 192  Q
    ||||||||||||||||||||||||||| | | | || ||| ||||||||||| |  || |||||||||||||||| ||||    
T  34702982 actacaacagaaatgacatttcacatctg-taatattgacttttcacatcggttcccagccgatgtaactaaaggcgatg 34702904  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 34693394 - 34693346
Alignment:
Q  252 atagagacattggtttgagagatgaggtctttaatgtcttggattaaaa 300  Q
    |||||||||||  |||||||||||||||||||||| | ||||| |||||    
T  34693394 atagagacattattttgagagatgaggtctttaatattttggactaaaa 34693346  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 19177952 - 19178030
Alignment:
Q  111 ccactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||| |||||||||    
T  19177952 ccactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg-taccaaccgatgtaattaaaggtga 19178030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 28239295 - 28239375
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 192  Q
    |||||| ||| ||||||||||||||||| || ||||| ||||||||||||||| |  |||||||||| |||||||||||||    
T  28239295 cactactacataaatgacatttcacatcagtggaaattgacatttcacatcgggtcccaaccgatgtcactaaaggtgatg 28239375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 12814983 - 12815053
Alignment:
Q  121 agaaatgacatttcacatcggttgaaatcgacattt-cacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||||| ||||||||||  ||||||||||| ||| |||||||| || || |||||||||||||||||||    
T  12814983 agaaatgagatttcacatcacttgaaatcgactttttcacatcgggtgacacccgatgtaactaaaggtga 12815053  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 5155502 - 5155580
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| ||||||||||||||||||||| || ||||||||||||||||||||| |  ||||||||||||||||||||||    
T  5155502 cactactacagaaatgacatttcacatcagtggaaatcgacatttcacatcgggtcccaaccgatgtaactaaaggtga 5155580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 17722293 - 17722373
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 192  Q
    |||||| ||||||||||||||||||||||||||||||| || ||| ||||||| || ||||||||||| ||||||||||||    
T  17722293 cactactacagaaatgacatttcacatcggttgaaatcaacttttaacatcgggtgccaaccgatgtacctaaaggtgatg 17722373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 51746276 - 51746198
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| |||||||||||||||||||||||| |||| |||| ||||||||||| |  | ||||||||||||||||||||    
T  51746276 cactactacagaaatgacatttcacatcggtggaaaacgacttttcacatcgggtccctaccgatgtaactaaaggtga 51746198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 2594448 - 2594526
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| ||||||||||||||||||||| || ||| ||||| ||| ||||||| |  ||||||||||||||||||||||    
T  2594448 cactactacagaaatgacatttcacatcagtggaattcgactttttacatcgggtcccaaccgatgtaactaaaggtga 2594526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 17641348 - 17641425
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtg 189  Q
    |||||| ||| ||||||||| |||||||||||| ||| ||||||||||||||| |   ||||||||| ||||||||||    
T  17641348 cactactacataaatgacatctcacatcggttggaattgacatttcacatcgggtcctaaccgatgtcactaaaggtg 17641425  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 1979391 - 1979459
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaa 180  Q
    ||||||| |||||||||  ||||||||| |||||||  ||  ||||||||||| || ||||||||||||    
T  1979391 cactacagcagaaatgatttttcacatcagttgaaaatgatttttcacatcggttgacaaccgatgtaa 1979459  T

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Target: scaffold0234 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 7023 - 6945
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |  |||||||||||||||| |||||    
T  7023 cactactacagaaatgacatttcacatcgattgaaattgacatttcacatcgggtaccaaccgatgtaactaagggtga 6945  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 16548292 - 16548357
Alignment:
Q  119 acagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaa 184  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |  ||||||||||||||||    
T  16548292 acagaaatgacatttcacattagttgaaatcgacatttcacatcgggtaccaaccgatgtaactaa 16548357  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 16730513 - 16730436
Alignment:
Q  113 actacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    ||||| ||||||||||||||| ||||| || ||||||||| |||||||| || |  || |||||||||||||||||||    
T  16730513 actactacagaaatgacatttaacatcagtggaaatcgacttttcacattgggtcccagccgatgtaactaaaggtga 16730436  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 21224552 - 21224629
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| ||||||||||||||| ||||| || ||||||||| ||||||||||| |  || ||||||| |||||||||||    
T  21224552 cactactacagaaatgacatttaacatcagtggaaatcgacttttcacatcgggtcccacccgatgt-actaaaggtga 21224629  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 27966368 - 27966300
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaa 180  Q
    |||||| |||||||| |  ||||||||| ||||||| | || ||||||||| | |||||||||||||||    
T  27966368 cactactacagaaataagttttcacatcagttgaaaactacttttcacatcaggtggcaaccgatgtaa 27966300  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 8981547 - 8981625
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| |||||||||||||| ||||||||||| ||||||| ||||||||||| |  |||| |||||| ||||||||||    
T  8981547 cactactacagaaatgacattccacatcggttggaatcgacttttcacatcgggtcccaacggatgtagctaaaggtga 8981625  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 7705932 - 7706012
Alignment:
Q  110 tccactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||||| |||||||| |||||||||||| || ||||| ||||||||||||||| |  || ||||||| |||||||||||    
T  7705932 tccactactacagaaatcacatttcacatcagtggaaattgacatttcacatcgggtcccagccgatgtgactaaaggtga 7706012  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 31715385 - 31715307
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtga 190  Q
    |||||| ||| ||||||||||||||||| ||  || ||||| ||||||||||| |  ||||||||||||||||||||||    
T  31715385 cactactacaaaaatgacatttcacatcagtgaaattcgacttttcacatcggatcccaaccgatgtaactaaaggtga 31715307  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 26263058 - 26263138
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 192  Q
    |||||| ||| |||||| |||||||||| || ||||||||| |||||||| || |  || |||||||||||||||||||||    
T  26263058 cactactacataaatgaaatttcacatcagtggaaatcgacttttcacattgggtcccacccgatgtaactaaaggtgatg 26263138  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 32913690 - 32913770
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 192  Q
    |||||| ||||||||||||||||||||  || ||| ||||| ||||| ||||| |  || |||||||||||||||||||||    
T  32913690 cactactacagaaatgacatttcacattagtggaattcgacttttcaaatcggatcccacccgatgtaactaaaggtgatg 32913770  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 21112740 - 21112819
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 192  Q
    |||||| ||||||||||||||| ||||| || |||||| || ||||||||||| |  || ||||||| |||||||||||||    
T  21112740 cactactacagaaatgacatttaacatcagtggaaatcaacttttcacatcgg-tcccacccgatgtcactaaaggtgatg 21112819  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 21117482 - 21117562
Alignment:
Q  112 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactaaaggtgatg 192  Q
    |||||| |||||||||| |||| ||||| || |||||| || ||||||||||| |  || ||||||| |||||||||||||    
T  21117482 cactactacagaaatgatatttaacatcagtggaaatcaacttttcacatcgggtcccacccgatgtcactaaaggtgatg 21117562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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