View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_30 (Length: 346)
Name: NF6339_low_30
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 4617738 - 4618072
Alignment:
| Q |
13 |
aatatagaatatgatatatttaagattggtatataaaaattaaaataaattttgtttgagggtataaattaaacatcattattagttaaagaaaaacaaa |
112 |
Q |
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| T |
4617738 |
aatatagaatatgatatatttaagattggtatataaaaattaaaataaattttgtttgagggtataaattaaacatcattattagttaaagaaaaacaaa |
4617837 |
T |
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| Q |
113 |
tctatcctgttaagaatcgttaattgtgttttgctgatt---gtggtatcacggaggagctc----------acaaaacaaaacccaaacaaaatatta- |
198 |
Q |
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| T |
4617838 |
tctatcctgttaagaatcgttaattgtgttttgctgattgtggtggtatcacggaggagctcagaaaacaaaacaaaacaaaacccaaacaaaatattat |
4617937 |
T |
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| Q |
199 |
---ttatttctggaaagtttgaatcttgttcttaaatctaaaactccatccagttcgtgtagatctctctcggtaatagcacgtgattcgtgtatatctg |
295 |
Q |
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| T |
4617938 |
tatttatttctggaaagtttgaatcttgttcttaaatctaaaactccatccagttcgtgtagatctctctcggtaatagcacgtgattcgtgtatatctg |
4618037 |
T |
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| Q |
296 |
aattttcccctgaactgaattttagggggaaaatt |
330 |
Q |
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| T |
4618038 |
aattttcccctgaactgaattttagggggaaaatt |
4618072 |
T |
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