View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_low_31 (Length: 339)

Name: NF6339_low_31
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_low_31
NF6339_low_31
[»] chr7 (35 HSPs)
chr7 (134-243)||(28970960-28971069)
chr7 (241-321)||(28970846-28970926)
chr7 (8-114)||(15107132-15107239)
chr7 (8-114)||(36580415-36580522)
chr7 (8-114)||(41243710-41243816)
chr7 (241-313)||(28993845-28993917)
chr7 (8-114)||(18504310-18504417)
chr7 (243-321)||(28983276-28983354)
chr7 (8-114)||(36903330-36903436)
chr7 (8-103)||(15348018-15348113)
chr7 (8-114)||(28785895-28786002)
chr7 (241-288)||(28983235-28983282)
chr7 (12-114)||(35250189-35250292)
chr7 (8-74)||(9500081-9500148)
chr7 (241-288)||(28970805-28970852)
chr7 (23-113)||(8073957-8074047)
chr7 (8-70)||(28350329-28350390)
chr7 (26-74)||(24433134-24433182)
chr7 (8-113)||(4049775-4049882)
chr7 (19-90)||(11374132-11374202)
chr7 (23-114)||(18186591-18186682)
chr7 (8-114)||(20184984-20185090)
chr7 (19-111)||(6726398-6726489)
chr7 (147-207)||(28983428-28983488)
chr7 (8-114)||(14247445-14247552)
chr7 (8-70)||(15029128-15029191)
chr7 (19-70)||(17876248-17876299)
chr7 (241-288)||(28993794-28993841)
chr7 (23-96)||(13889623-13889695)
chr7 (27-112)||(23826106-23826191)
chr7 (38-74)||(1450081-1450117)
chr7 (8-51)||(3381929-3381973)
chr7 (8-51)||(14247360-14247404)
chr7 (9-104)||(17931880-17931976)
chr7 (38-74)||(26763544-26763580)
[»] chr3 (47 HSPs)
chr3 (23-114)||(28204626-28204717)
chr3 (8-114)||(44436538-44436645)
chr3 (8-114)||(33329757-33329864)
chr3 (8-114)||(578553-578659)
chr3 (20-114)||(36687731-36687825)
chr3 (8-113)||(51315625-51315731)
chr3 (8-114)||(1938383-1938490)
chr3 (8-114)||(43747420-43747527)
chr3 (19-113)||(27178288-27178382)
chr3 (22-114)||(3916511-3916603)
chr3 (19-103)||(8024933-8025017)
chr3 (8-114)||(44433205-44433311)
chr3 (8-114)||(44585926-44586033)
chr3 (19-114)||(46226776-46226871)
chr3 (20-114)||(36677651-36677745)
chr3 (8-113)||(54719138-54719244)
chr3 (19-114)||(28712533-28712628)
chr3 (8-70)||(38957913-38957976)
chr3 (8-114)||(47189734-47189841)
chr3 (8-114)||(44624690-44624797)
chr3 (19-114)||(14340874-14340969)
chr3 (19-114)||(25843444-25843539)
chr3 (8-113)||(48348400-48348505)
chr3 (24-93)||(49787334-49787403)
chr3 (8-56)||(3916635-3916683)
chr3 (19-114)||(20432324-20432420)
chr3 (23-114)||(19404534-19404625)
chr3 (27-114)||(53184596-53184682)
chr3 (20-114)||(86653-86747)
chr3 (8-66)||(12759575-12759633)
chr3 (23-113)||(38177259-38177349)
chr3 (21-114)||(43586703-43586794)
chr3 (21-114)||(7218291-7218384)
chr3 (19-112)||(36567016-36567109)
chr3 (8-114)||(1814697-1814801)
chr3 (19-70)||(15976316-15976367)
chr3 (8-51)||(17773237-17773280)
chr3 (8-51)||(19074538-19074581)
chr3 (9-110)||(25248758-25248860)
chr3 (19-90)||(35359075-35359146)
chr3 (19-90)||(54464241-54464312)
chr3 (61-114)||(52008365-52008418)
chr3 (13-96)||(791478-791562)
chr3 (8-114)||(3192839-3192947)
chr3 (8-51)||(25902556-25902600)
chr3 (42-90)||(50724842-50724890)
chr3 (42-90)||(50787960-50788008)
[»] chr4 (45 HSPs)
chr4 (8-114)||(14449424-14449531)
chr4 (8-114)||(2836966-2837073)
chr4 (9-114)||(44356538-44356644)
chr4 (8-114)||(1420684-1420791)
chr4 (8-114)||(6637203-6637310)
chr4 (8-114)||(14016792-14016899)
chr4 (19-114)||(43074728-43074823)
chr4 (8-103)||(51362606-51362702)
chr4 (8-114)||(20112290-20112397)
chr4 (8-114)||(21597542-21597649)
chr4 (8-113)||(23759715-23759821)
chr4 (9-114)||(29697590-29697695)
chr4 (23-113)||(51371546-51371636)
chr4 (19-96)||(2654127-2654204)
chr4 (8-104)||(10059847-10059944)
chr4 (19-103)||(2016870-2016954)
chr4 (8-104)||(11824256-11824351)
chr4 (19-114)||(12719585-12719680)
chr4 (8-108)||(6207320-6207421)
chr4 (10-114)||(54855373-54855477)
chr4 (8-114)||(16292335-16292442)
chr4 (19-90)||(25909566-25909637)
chr4 (23-90)||(27978774-27978841)
chr4 (35-114)||(49185664-49185743)
chr4 (8-114)||(50769431-50769537)
chr4 (19-113)||(53312366-53312460)
chr4 (26-107)||(1571481-1571562)
chr4 (8-111)||(51233547-51233651)
chr4 (23-114)||(4796180-4796271)
chr4 (8-114)||(21871527-21871634)
chr4 (8-114)||(21927388-21927495)
chr4 (8-114)||(52462928-52463034)
chr4 (9-114)||(8070694-8070799)
chr4 (19-96)||(8965674-8965751)
chr4 (21-110)||(21451539-21451627)
chr4 (19-104)||(54983983-54984068)
chr4 (19-114)||(31553382-31553477)
chr4 (19-114)||(53924891-53924986)
chr4 (8-66)||(11983580-11983637)
chr4 (21-70)||(21322895-21322944)
chr4 (21-114)||(35383899-35383992)
chr4 (9-90)||(40489279-40489360)
chr4 (8-104)||(47999596-47999693)
chr4 (22-70)||(34567800-34567848)
chr4 (38-74)||(44932632-44932668)
[»] chr2 (31 HSPs)
chr2 (9-114)||(8857114-8857220)
chr2 (8-114)||(24472587-24472692)
chr2 (9-114)||(44617879-44617985)
chr2 (19-114)||(27489511-27489606)
chr2 (8-114)||(37431610-37431717)
chr2 (8-114)||(37803190-37803296)
chr2 (8-114)||(43028861-43028967)
chr2 (8-113)||(5470478-5470584)
chr2 (8-113)||(15022905-15023011)
chr2 (8-113)||(34760914-34761020)
chr2 (19-112)||(25333577-25333670)
chr2 (9-113)||(6592795-6592899)
chr2 (9-114)||(34679164-34679271)
chr2 (22-114)||(39918516-39918608)
chr2 (23-114)||(41196370-41196461)
chr2 (9-114)||(14489281-14489387)
chr2 (8-113)||(14943686-14943792)
chr2 (23-114)||(4576683-4576774)
chr2 (19-87)||(32969636-32969704)
chr2 (22-101)||(5008441-5008520)
chr2 (8-70)||(35718712-35718775)
chr2 (9-90)||(25411609-25411691)
chr2 (23-114)||(5362315-5362407)
chr2 (22-114)||(18969234-18969326)
chr2 (42-90)||(34600649-34600697)
chr2 (8-114)||(4925506-4925613)
chr2 (19-70)||(16043206-16043257)
chr2 (23-114)||(19895754-19895845)
chr2 (8-113)||(2609230-2609336)
chr2 (38-90)||(35180449-35180501)
chr2 (42-74)||(42274703-42274735)
[»] scaffold0015 (1 HSPs)
scaffold0015 (19-114)||(76941-77035)
[»] chr5 (30 HSPs)
chr5 (10-104)||(2974702-2974797)
chr5 (8-114)||(20629884-20629991)
chr5 (9-114)||(26702504-26702609)
chr5 (9-114)||(26972237-26972342)
chr5 (19-114)||(9852865-9852960)
chr5 (8-114)||(27904623-27904730)
chr5 (10-114)||(12406180-12406285)
chr5 (8-114)||(3333841-3333948)
chr5 (19-114)||(31080555-31080650)
chr5 (19-90)||(34320111-34320182)
chr5 (8-70)||(37897902-37897964)
chr5 (21-114)||(3999238-3999331)
chr5 (8-114)||(25910790-25910897)
chr5 (8-114)||(32391859-32391966)
chr5 (9-114)||(16132812-16132918)
chr5 (8-90)||(19131664-19131747)
chr5 (19-114)||(20512275-20512370)
chr5 (19-106)||(25363904-25363991)
chr5 (23-114)||(28446087-28446178)
chr5 (19-114)||(36798250-36798344)
chr5 (8-114)||(43098167-43098273)
chr5 (21-114)||(19340904-19340997)
chr5 (18-90)||(40133073-40133144)
chr5 (20-111)||(18403066-18403157)
chr5 (8-114)||(22300667-22300774)
chr5 (19-114)||(35166374-35166469)
chr5 (8-114)||(24779341-24779447)
chr5 (8-113)||(40276170-40276276)
chr5 (27-114)||(26563075-26563162)
chr5 (17-66)||(40132981-40133030)
[»] chr1 (29 HSPs)
chr1 (23-114)||(49426133-49426223)
chr1 (8-107)||(3377568-3377668)
chr1 (8-111)||(16874646-16874750)
chr1 (19-114)||(17760763-17760858)
chr1 (8-113)||(39642349-39642455)
chr1 (19-104)||(41997791-41997876)
chr1 (19-114)||(14978875-14978970)
chr1 (8-114)||(30849370-30849477)
chr1 (8-114)||(46572893-46572998)
chr1 (8-110)||(50401438-50401540)
chr1 (24-90)||(14190706-14190772)
chr1 (23-113)||(46912332-46912422)
chr1 (19-114)||(16298197-16298292)
chr1 (8-110)||(45739002-45739105)
chr1 (10-103)||(1096536-1096630)
chr1 (8-113)||(7579731-7579837)
chr1 (8-113)||(23220633-23220739)
chr1 (9-114)||(44672380-44672486)
chr1 (8-103)||(6569658-6569754)
chr1 (8-114)||(50226531-50226638)
chr1 (8-54)||(7579863-7579909)
chr1 (22-114)||(25486296-25486387)
chr1 (8-102)||(8301497-8301592)
chr1 (35-114)||(20224671-20224750)
chr1 (8-114)||(25085533-25085640)
chr1 (8-114)||(1853595-1853699)
chr1 (24-114)||(5287367-5287457)
chr1 (60-114)||(7060779-7060833)
chr1 (19-114)||(23480055-23480145)
[»] chr6 (19 HSPs)
chr6 (8-112)||(26311546-26311651)
chr6 (19-114)||(5003219-5003314)
chr6 (8-114)||(18031082-18031189)
chr6 (8-114)||(30349415-30349522)
chr6 (8-114)||(33399851-33399958)
chr6 (9-114)||(266252-266357)
chr6 (8-101)||(10727347-10727441)
chr6 (19-114)||(6036800-6036895)
chr6 (8-90)||(20474869-20474951)
chr6 (20-104)||(3812820-3812903)
chr6 (8-70)||(2853599-2853662)
chr6 (24-110)||(11351719-11351805)
chr6 (9-114)||(32143326-32143432)
chr6 (19-66)||(6036723-6036770)
chr6 (19-90)||(8160677-8160748)
chr6 (63-113)||(8223893-8223943)
chr6 (23-96)||(2840966-2841039)
chr6 (9-90)||(11108898-11108979)
chr6 (19-111)||(26601539-26601631)
[»] chr8 (29 HSPs)
chr8 (8-113)||(30539132-30539238)
chr8 (8-96)||(37813249-37813338)
chr8 (8-114)||(3676268-3676375)
chr8 (8-110)||(21486721-21486824)
chr8 (23-114)||(29044687-29044778)
chr8 (19-114)||(45177280-45177375)
chr8 (8-114)||(16982751-16982857)
chr8 (23-70)||(44269303-44269350)
chr8 (19-112)||(6807311-6807404)
chr8 (8-113)||(27545408-27545512)
chr8 (22-114)||(25144024-25144116)
chr8 (8-87)||(39889940-39890020)
chr8 (19-114)||(23702275-23702370)
chr8 (8-113)||(29657770-29657877)
chr8 (9-90)||(521608-521689)
chr8 (19-96)||(14880414-14880491)
chr8 (19-68)||(26823905-26823954)
chr8 (23-113)||(22846526-22846616)
chr8 (22-114)||(29790839-29790931)
chr8 (8-48)||(37263544-37263584)
chr8 (8-66)||(23702193-23702252)
chr8 (19-90)||(37939990-37940060)
chr8 (65-112)||(38593312-38593359)
chr8 (19-113)||(20853455-20853549)
chr8 (8-113)||(22192439-22192545)
chr8 (40-69)||(18929401-18929430)
chr8 (23-112)||(33298422-33298511)
chr8 (8-104)||(41487360-41487457)
chr8 (80-112)||(42363717-42363749)
[»] scaffold0328 (1 HSPs)
scaffold0328 (8-114)||(9478-9585)
[»] scaffold0248 (1 HSPs)
scaffold0248 (19-114)||(482-577)
[»] scaffold0417 (1 HSPs)
scaffold0417 (36-114)||(9433-9511)
[»] scaffold0137 (1 HSPs)
scaffold0137 (22-110)||(19995-20083)
[»] scaffold0011 (1 HSPs)
scaffold0011 (8-114)||(145420-145527)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-113)||(19170-19276)
[»] scaffold0578 (1 HSPs)
scaffold0578 (22-101)||(3157-3236)
[»] scaffold0194 (1 HSPs)
scaffold0194 (8-113)||(25041-25146)
[»] scaffold0166 (1 HSPs)
scaffold0166 (8-114)||(21724-21830)
[»] scaffold0372 (1 HSPs)
scaffold0372 (21-110)||(204-292)
[»] scaffold0062 (1 HSPs)
scaffold0062 (9-101)||(46228-46321)
[»] scaffold0016 (1 HSPs)
scaffold0016 (9-70)||(203360-203421)
[»] scaffold1301 (1 HSPs)
scaffold1301 (42-74)||(1227-1259)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 28971069 - 28970960
Alignment:
Q  134 tgtgcaattgatatttgtaggctagaattcatttatgttgtttcagttgtttctctctctgattgatgtgtatgtatcnnnnnnncagcttgatgtgact 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  28971069 tgtgcaattgatatttgtaggctagaattcatttatgttgtttcagttgtttctctctctgattgatgtgtatgtatctttttttcagcttgatgtgact 28970970  T
Q  234 gcactgcaag 243  Q
    |||| |||||    
T  28970969 gcaccgcaag 28970960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 28970926 - 28970846
Alignment:
Q  241 aagttagggtattgttagacccttttgttgactgttttgttgttaattatgctctgtgtgagtatgcaataaggaagttag 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28970926 aagttagggtattgttagacccttttgttgactgttttgttgttaattatgctctgtgtgagtatgcaataaggaagttag 28970846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 15107239 - 15107132
Alignment:
Q  8 ctacaaaaccgc-ccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||| ||||| ||||||| |    
T  15107239 ctacaaaaccgctccctaagttttgcatttgtggcagttttggcctccaatgccaattttgactcggtctacactgatgtggcaccctaagtgaggtgcc 15107140  T
Q  107 acgtgtta 114  Q
    || |||||    
T  15107139 acatgtta 15107132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 36580522 - 36580415
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| | ||||||||||| ||| ||| ||||||||||| ||||| |||||||||    
T  36580522 ctacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaagtcaattttgactcggtctacgctgacgtggcaccctaaatgaggtgtc 36580423  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  36580422 acgtgtta 36580415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 41243710 - 41243816
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||||||||||||||||||||||||||| |||||| | | |||| ||||||||||||| ||| |||  |||||||||| ||||| ||||||||||    
T  41243710 ctacaaaaccgcccctaagttttgcatttgtggcagtttttgtccccaaggccaattttgactcggtctacgttgacgtggcaccctaagtgaggtgtca 41243809  T
Q  108 cgtgtta 114  Q
     ||||||    
T  41243810 tgtgtta 41243816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 28993917 - 28993845
Alignment:
Q  241 aagttagggtattgttagacccttttgttgactgttttgttgttaattatgctctgtgtgagtatgcaataag 313  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  28993917 aagttagggtattgttggacccttttgttgactgttttgtcgttaattatgctccgagtgagtatgcaataag 28993845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 18504310 - 18504417
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||| || |||||||||||||  || ||| ||||||||||| ||||| ||||||  |    
T  18504310 ctacaaaaccgccccctaagttttgcatatgtggcagttttggcctctaaggccaattttgactcagtctacgctgacgtggcaccctaagtgaggttcc 18504409  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  18504410 acgtgtta 18504417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 28983354 - 28983276
Alignment:
Q  243 gttagggtattgttagacccttttgttgactgttttgttgttaattatgctctgtgtgagtatgcaataaggaagttag 321  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||||| | ||| |||||| |||||||||||    
T  28983354 gttagggtattgttagacccttttgttgactattctgttgttaattatcctctgcgcgaggatgcaacaaggaagttag 28983276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 36903330 - 36903436
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||||  ||| ||||||||||||| ||| ||| ||||| ||||| ||||| ||||||| ||    
T  36903330 ctacaaaaccgcccctaagttttccatctgtggcagttttggccctcaaggccaattttgactcggtctacgctgacatggcaccctaagtgaggtgcca 36903429  T
Q  108 cgtgtta 114  Q
    | |||||    
T  36903430 catgtta 36903436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 15348018 - 15348113
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggt 103  Q
    |||||||||| |||||||||||||||| ||||| |||| ||||| |||| | ||||||||||| ||| ||| |||| |||||| ||||| ||||||    
T  15348018 ctacaaaaccacccctaagttttgcatctgtggaagttatggcccccaaggtcaattttgactcggtctacgctgatgtggcaccctaagtgaggt 15348113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 28786002 - 28785895
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||| ||||| |||||||||||||| ||| ||||||| || |||| || |||||||||| ||| ||| |||||||| || ||||| ||||||| |    
T  28786002 ctacaaaactgccccataagttttgcatttatggcagttttgacccccaaggctaattttgactcggtctacgctgacgtgacaccctaagtgaggtgcc 28785903  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  28785902 acgtgtta 28785895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 28983282 - 28983235
Alignment:
Q  241 aagttagggtattgttagacccttttgttgactgttttgttgttaatt 288  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  28983282 aagttaggttattgttagacccttttgttgactgttttgttgttaatt 28983235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 35250189 - 35250292
Alignment:
Q  12 aaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgt 110  Q
    |||||||||| ||||||||||||| | ||  |||||||| | |||| ||||||||||||| ||| ||||||||||||||| | ||| ||||||| |||||    
T  35250189 aaaaccgccctctaagttttgcatctttgacagttttggaccccaaggccaattttgactcggtctacactgacgtggcaccttaagtgaggtgccacgt 35250288  T
Q  111 gtta 114  Q
    ||||    
T  35250289 gtta 35250292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 9500148 - 9500081
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggt 74  Q
    ||||||||||||||| |||||||||   ||||||||||||||||| |||| |||||||||||||||||    
T  9500148 ctacaaaaccgccccctaagttttgaccttgtggtagttttggcccccaaggccaattttgacttggt 9500081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 28970852 - 28970805
Alignment:
Q  241 aagttagggtattgttagacccttttgttgactgttttgttgttaatt 288  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||    
T  28970852 aagttagggaattgttagacccttttgtcgactgttttgttgttaatt 28970805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 8073957 - 8074047
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtt 113  Q
    |||||||||||| ||||| |||||||||| |||| ||||||||||| | ||| | | |||||||||||  |||| ||||||| ||||||||    
T  8073957 taagttttgcatatgtggcagttttggcccccaaggccaattttgattcggtcttcgctgacgtggcactctaagtgaggtgccacgtgtt 8074047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 28350390 - 28350329
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||||||||||||||||||||||  ||||| |||||||||| |||| |||||||||||||    
T  28350390 ctacaaaaccgcccctaagttttgcacctgtggcagttttggcc-ccaaggccaattttgact 28350329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 24433182 - 24433134
Alignment:
Q  26 gttttgcatttgtggtagttttggcctccaatgccaattttgacttggt 74  Q
    ||||||||| |||||||||||||||||| || |||||||||||||||||    
T  24433182 gttttgcatatgtggtagttttggcctctaaagccaattttgacttggt 24433134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 4049775 - 4049882
Alignment:
Q  8 ctacaaaaccgc-ccctaagt-tttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgt 105  Q
    |||||||||||  |||||||| ||||||| ||||| ||||||| ||  ||| ||||||||||||| | | ||| ||||||||||| ||||| |||||||     
T  4049775 ctacaaaaccgttccctaagtctttgcatctgtggcagttttgaccctcaaggccaattttgactcgatctacgctgacgtggcaccctaagtgaggtgc 4049874  T
Q  106 cacgtgtt 113  Q
    ||||||||    
T  4049875 cacgtgtt 4049882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 11374202 - 11374132
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    ||||||||||||||||||||| ||||||||| | |||| ||||||||||||  ||| ||| |||||||||||    
T  11374202 cccctaagttttgcatttgtgctagttttgg-cgccaaggccaattttgacccggtctacgctgacgtggca 11374132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 18186682 - 18186591
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||| ||||| |||||||| | |||| |||||||||||||  || |||  |||||||||| ||||| ||||||| |||| ||||    
T  18186682 taagttttgcatctgtggcagttttggtccccaaggccaattttgactcagtctacgttgacgtggcaccctaagtgaggtgccacgggtta 18186591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 20184984 - 20185090
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||| || ||||||||||| ||||  |||||||||| |||| | ||||||||||| ||| ||| |||| || ||| ||||| |||||||||    
T  20184984 ctacaaaaccgcctcttaagttttgcatatgtgccagttttggcccccaaggtcaattttgactcggtctacgctgatgtagca-cctaagtgaggtgtc 20185082  T
Q  107 acgtgtta 114  Q
     |||||||    
T  20185083 gcgtgtta 20185090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 6726489 - 6726398
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtg 111  Q
    |||||||||||||||  ||||| ||||||| || |||| | |||||||||||  || ||| ||||||||||| ||||| ||||||| ||||||    
T  6726489 cccctaagttttgcacatgtggcagttttgccc-ccaaggacaattttgactcagtttacgctgacgtggcaccctaagtgaggtgccacgtg 6726398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 28983488 - 28983428
Alignment:
Q  147 tttgtaggctagaattcatttatgttgtttcagttgtttctctctctgattgatgtgtatg 207  Q
    ||||||| ||||||||||||||||| ||| | ||||||| |||  ||||||||||||||||    
T  28983488 tttgtagactagaattcatttatgtagttgctgttgtttgtcttgctgattgatgtgtatg 28983428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 14247552 - 14247445
Alignment:
Q  8 ctacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| || ||||||||||||  ||||| ||||||||| ||||| ||||||||| ||| | | ||| |||| |||||| |||||  |||||||     
T  14247552 ctacaaaaccgtccgctaagttttgcacatgtggcagttttggcatccaaagccaattttaactcgatctacgctgatgtggcaccctaagggaggtgtt 14247453  T
Q  107 acgtgtta 114  Q
     |||||||    
T  14247452 gcgtgtta 14247445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 15029128 - 15029191
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||||||||||| |||||||||||  ||||| |||||||||| |||| | |||||||||||    
T  15029128 ctacaaaaccgccccctaagttttgcacatgtggcagttttggcccccaaggtcaattttgact 15029191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 17876248 - 17876299
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||| |||||||| |||||  |||||||||||||| |||||||||||||    
T  17876248 cccctaaattttgcatctgtggcggttttggcctccaaggccaattttgact 17876299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 28993841 - 28993794
Alignment:
Q  241 aagttagggtattgttagacccttttgttgactgttttgttgttaatt 288  Q
    ||||||||| |||  ||||||||||||| |||||||||||||||||||    
T  28993841 aagttagggcatttatagacccttttgtcgactgttttgttgttaatt 28993794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 13889695 - 13889623
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaa 96  Q
    |||||||||||||||||| |||||||| | ||| ||||||||||||||| || ||| ||||  ||||| |||||    
T  13889695 taagttttgcatttgtggcagttttggtc-ccagtgccaattttgacttagtctacgctgatatggcaccctaa 13889623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 23826106 - 23826191
Alignment:
Q  27 ttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgt 112  Q
    |||||||||||||| |||||||||| ||||   ||||||||| | ||| ||| |||||||| |  ||||||||| |||||| ||||    
T  23826106 ttttgcatttgtggcagttttggcccccaagatcaattttgattcggtctacgctgacgtgacgccctaattgaagtgtcatgtgt 23826191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 1450081 - 1450117
Alignment:
Q  38 tggtagttttggcctccaatgccaattttgacttggt 74  Q
    |||||||||||||| |||| |||||||||||||||||    
T  1450081 tggtagttttggcccccaaagccaattttgacttggt 1450117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 3381929 - 3381973
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcc 51  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||||    
T  3381929 ctacaaaaccgccccctaagttttgcatatgtggcagttttggcc 3381973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 14247360 - 14247404
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcc 51  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||    
T  14247360 ctacaaaaccgccccataagttttgcaattgtggcagttttggcc 14247404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 17931976 - 17931880
Alignment:
Q  9 tacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtg 104  Q
    ||||||| ||||| |||| |||||||| ||||  |||||||| | | |||  |||||||||||| || ||| ||||||||||| ||||| |||||||    
T  17931976 tacaaaatcgccctctaaattttgcatctgtgtcagttttggtcccaaatatcaattttgactttgtctacgctgacgtggcaccctaagtgaggtg 17931880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 26763544 - 26763580
Alignment:
Q  38 tggtagttttggcctccaatgccaattttgacttggt 74  Q
    |||||||||||||| |||| |||||||||||||||||    
T  26763544 tggtagttttggcccccaaggccaattttgacttggt 26763580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 28204717 - 28204626
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  28204717 taagttttgtatttgtggtagttttggcctccaatgccaattttgactcggtctacactgacgtggcatcctaattgaggtgtcacgtgtta 28204626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 44436645 - 44436538
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||| |||| ||||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  44436645 ctacaaaaccgccccctaagttttgcatctgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 44436546  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  44436545 acgtgtta 44436538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 33329864 - 33329757
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| ||||||||| |||||||||||| |||||||||| ||||  |||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  33329864 ctacaaaaccgtcccctaagtattgcatttgtggcagttttggcccccaagaccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 33329765  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  33329764 acgtgtta 33329757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 578659 - 578553
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||||||||||||||||| ||  |||||||||||||||| |||| ||||||||||||| ||| ||  ||||||||||| |||||  |||||| ||    
T  578659 ctacaaaaccgcccctaagtttttcacctgtggtagttttggcccccaaggccaattttgactcggtctatgctgacgtggcaccctaagcgaggtgcca 578560  T
Q  108 cgtgtta 114  Q
    |||||||    
T  578559 cgtgtta 578553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 36687825 - 36687731
Alignment:
Q  20 ccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||| ||||||||||||| | ||||||||||||||| ||||||||||| ||| ||| ||||||||||| ||||| ||||||| |||||||||    
T  36687825 ccctaagatttgcatttgtggcaattttggcctccaatgtcaattttgactcggtttacgctgacgtggcaccctaagtgaggtgccacgtgtta 36687731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 51315731 - 51315625
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||  ||||| |||||||||| |||| ||||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  51315731 ctacaaaaccgccccctaagttttgcacctgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 51315632  T
Q  107 acgtgtt 113  Q
    |||||||    
T  51315631 acgtgtt 51315625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 1938383 - 1938490
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||  ||| | ||||||||||| ||| ||| ||||| ||||| ||||| |||||||||    
T  1938383 ctacaaaaccgccccttaagttttgcacctgtggtagttttggcccacaaagtcaattttgactcggtctacgctgacatggcaccctaagtgaggtgtc 1938482  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  1938483 acgtgtta 1938490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 43747527 - 43747420
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||| |||    ||||||||||| ||| ||| ||||||||||||||||| ||||||| |    
T  43747527 ctacaaaaccgccccctaagttttgcatttatggcagttttggcccccacgatcaattttgactcggtctacgctgacgtggcatcctaagtgaggtgcc 43747428  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  43747427 acgtgtta 43747420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 27178382 - 27178288
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtt 113  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||||||||||| ||| |||| ||| || ||||  ||||||||||| ||||    
T  27178382 cccctaagttttgcatctgtggtagttttgacccccaatgccaattttgacttggtctacgctgatgtgtcaccctacgtgaggtgtcacatgtt 27178288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 3916511 - 3916603
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||||| ||||| |||||||||| |||| | ||||||||||| ||| |||||| |||||||| ||||| ||||||| |||||||||    
T  3916511 ctaagttttgcatctgtggcagttttggcccccaaagtcaattttgactcggtctacactaacgtggcaccctaagtgaggtgccacgtgtta 3916603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 8025017 - 8024933
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggt 103  Q
    |||||||||||||||| |||||||||||||||||||||  |||||||| ||| ||| ||| |||||||| |||||||| ||||||    
T  8025017 cccctaagttttgcatatgtggtagttttggcctccaagaccaattttaactcggtctacgctgacgtgacatcctaaatgaggt 8024933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 44433311 - 44433205
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||| |||| ||||||||||||  ||| ||| |||| |||||| ||||| | |||||||    
T  44433311 ctacaaaaccgccccctaagttttgcatatgtggcagttttggcccccaaggccaattttgacccggtctacgctgatgtggca-cctaagttaggtgtc 44433213  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  44433212 acgtgtta 44433205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 44586033 - 44585926
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||| | ||||| |||||||||| |||  ||||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  44586033 ctacaaaaccgccccctaagttttgcttctgtggcagttttggcccccacggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 44585934  T
Q  107 acgtgtta 114  Q
    | ||||||    
T  44585933 atgtgtta 44585926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 46226776 - 46226871
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||| ||||||||  ||||| |||||||||| || ||||||||||| ||| ||||||| ||||||||||| ||||| ||||||| |||||||||    
T  46226776 cccctatgttttgcacctgtggcagttttggcccccgatgccaattttaactcggtatacgctgacgtggcaccctaagtgaggtgccacgtgtta 46226871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 36677745 - 36677651
Alignment:
Q  20 ccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||| ||||||||||||| | ||||||||||||| | ||||||||||| ||| ||| ||||||||||| | ||| ||||||| |||||||||    
T  36677745 ccctaagatttgcatttgtggcaattttggcctccaaggtcaattttgactcggtttacgctgacgtggcaccttaagtgaggtgccacgtgtta 36677651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 54719244 - 54719138
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||| |||   || ||||||| |||||||||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  54719244 ctacaaaaccgccccctaagttttgcatatgtaccaggtttggcccccaatgccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 54719145  T
Q  107 acgtgtt 113  Q
    | |||||    
T  54719144 aagtgtt 54719138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 28712533 - 28712628
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||| | |||||| ||  |||| ||||| ||||||| ||| ||||||||||||||| ||||| ||||||| |||||||||    
T  28712533 cccctaagttttgcatctgtagcagttttagcacccaaggccaactttgactcggtctacactgacgtggcaccctaagtgaggtgccacgtgtta 28712628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 38957913 - 38957976
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||||    
T  38957913 ctacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaggccaattttgact 38957976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 47189841 - 47189734
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||| || |||||||||||||||||| ||||||| ||  |||   |||||||||||| || |||||||||||| || | ||| |||||||||    
T  47189841 ctacaaaaccgctccataagttttgcatttgtggcagttttgaccctcaagatcaattttgacttcgtctacactgacgtgacaccttaagtgaggtgtc 47189742  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  47189741 acgtgtta 47189734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 44624690 - 44624797
Alignment:
Q  8 ctacaaaaccg--cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgt 105  Q
    |||||||||||  |||||| ||||||||| ||||| |||||||| | |||| ||||||||||||| ||| ||| ||||||||||| ||||| |||||||     
T  44624690 ctacaaaaccgatcccctatgttttgcatctgtggcagttttggtc-ccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtga 44624788  T
Q  106 cacgtgtta 114  Q
    || ||||||    
T  44624789 catgtgtta 44624797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 14340969 - 14340874
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||||||||| |||||||||| |||| || |||||||||| ||| ||| || || |||||   ||| |||||||||| ||||||    
T  14340969 cccctaagttttgcatttgtggcagttttggcccccaacgctaattttgactcggtctacgctaacatggcaggttaagtgaggtgtcatgtgtta 14340874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 25843444 - 25843539
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||| |||||||| | |||| ||||||||||||   || ||| ||||||||||| |||||  |||||| |||||||||    
T  25843444 cccctaagttttgcatctgtggcagttttggtccccaaggccaattttgacccagtctacgctgacgtggcaccctaagcgaggtgccacgtgtta 25843539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 48348505 - 48348400
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||| ||||||| ||||||||||| ||||| ||||||| || ||||  |||||||||||| ||| ||| |||||||||||  |||| ||||||| |    
T  48348505 ctacaaaatcgccccttaagttttgcatatgtggcagttttgacc-ccaagcccaattttgactcggtctacgctgacgtggcacgctaagtgaggtgcc 48348407  T
Q  107 acgtgtt 113  Q
    |||||||    
T  48348406 acgtgtt 48348400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 49787334 - 49787403
Alignment:
Q  24 aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcc 93  Q
    ||||||||||| ||||| ||||||||||||||| | ||||||||||| ||| ||| |||||||| |||||    
T  49787334 aagttttgcatctgtggcagttttggcctccaaagtcaattttgactcggtctacgctgacgtgtcatcc 49787403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 3916683 - 3916635
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaa 56  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  3916683 ctacaaaaccgtccctaagttttgcaattgtagtagttttggcctccaa 3916635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 20432420 - 20432324
Alignment:
Q  19 cccctaagttttg-catttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||||  ||| ||||| ||||||| || |||| | ||||||||||||||| ||| ||||||| ||| ||||| ||||||| |||||||||    
T  20432420 cccctaagtttttacatctgtggcagttttgacccccaaggacaattttgacttggtctacgctgacgtagcaccctaagtgaggtgccacgtgtta 20432324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 19404625 - 19404534
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||  ||||  |||||||||| |||| |||||||||||||| || ||| || ||||| || ||||| ||||||| |||||||||    
T  19404625 taagttttgcacatgtgacagttttggcccccaaggccaattttgacttagtctacgctaacgtgacaccctaagtgaggtgccacgtgtta 19404534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 53184596 - 53184682
Alignment:
Q  27 ttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||| ||||||| |||||||  |||||||||||| ||| ||| ||||| || || ||||| ||| |||||||||||||    
T  53184596 ttttgcatttgtggcagttttg-cctccaaaaccaattttgactcggtctacgctgacttgacaccctaagtgatgtgtcacgtgtta 53184682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 86653 - 86747
Alignment:
Q  20 ccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||| |||| | |||||||||| ||||  |||||||||||| | | ||| ||||| ||| | ||||| ||||||| |||||||||    
T  86653 ccctaagttttgcacttgtagcagttttggcccccaagaccaattttgactcgatctacgctgacatgggaccctaagtgaggtgccacgtgtta 86747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 12759575 - 12759633
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaatttt 66  Q
    ||||||||||||||||||||||||||  ||| | ||||||||||||||| | |||||||    
T  12759575 ctacaaaaccgcccctaagttttgcaactgtagcagttttggcctccaaagtcaatttt 12759633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 38177259 - 38177349
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtt 113  Q
    |||||||||||| ||||  | |||||||| |||| ||||||||||||| ||| | | ||||||||||| ||||| ||||||| ||| ||||    
T  38177259 taagttttgcatatgtgacatttttggcccccaaggccaattttgactcggtttgcgctgacgtggcaccctaagtgaggtgccacatgtt 38177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 43586794 - 43586703
Alignment:
Q  21 cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||| ||||||||||||||  |||| ||||| |  || |||||||||||||||| ||| ||||||||||| ||||| |||  ||||||||||||    
T  43586794 cctatgttttgcatttgtgacagttatggcccctgataccaattttgacttggtctacgctgacgtggcaccctaagtga--tgtcacgtgtta 43586703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 7218384 - 7218291
Alignment:
Q  21 cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||| ||| ||||| |||||||||| |||| | ||||||||||||| | ||  |||||||| || | ||| ||||||| |||||||||    
T  7218384 cctaagttttacatctgtggcagttttggcccccaaggtcaattttgacttgatctatgctgacgtgacaccttaagtgaggtgccacgtgtta 7218291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 36567109 - 36567016
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgt 112  Q
    |||||| ||||||||  |||  ||||||||||| |||| ||| ||||||||| |||  || ||||||||||| ||||| ||||||| |||||||    
T  36567109 cccctatgttttgcaactgtactagttttggcccccaaggccgattttgactcggtcaacgctgacgtggcaccctaagtgaggtgccacgtgt 36567016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 1814801 - 1814697
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgc-caattttgacttggtatacactgacgtggcatcctaattgaggtgt 105  Q
    ||||||||||| ||||||||||||||||    || |||||||||| || | |  ||||||||||| ||| ||| ||||||||||| ||||| |||||||     
T  1814801 ctacaaaaccgtcccctaagttttgcat----ggcagttttggccccctaagatcaattttgactcggtctacgctgacgtggcaccctaagtgaggtgc 1814706  T
Q  106 cacgtgtta 114  Q
    |||||||||    
T  1814705 cacgtgtta 1814697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 15976316 - 15976367
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||||||||||| |||||| ||||||||||  ||| |||||||||||||    
T  15976316 cccctaagttttgcacttgtggcagttttggccatcaaagccaattttgact 15976367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 17773237 - 17773280
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcc 51  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||    
T  17773237 ctacaaaaccgcccctaagttttgcaactgtggcagttttggcc 17773280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 19074538 - 19074581
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcc 51  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||    
T  19074538 ctacaaaaccgcccctaagttttgcaactgtggcagttttggcc 19074581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 25248758 - 25248860
Alignment:
Q  9 tacaaaaccgccc-ctaagttttgcatttgtggtag-ttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||| ||||||||||||| |||||||| |||||| | ||||   ||||||||||| ||| ||||| ||||||| | ||||| ||||||| |    
T  25248758 tacaaaaccgccctctaagttttgcatctgtggtagtttttggtccccaagatcaattttgactcggtctacac-gacgtggtagcctaagtgaggtgcc 25248856  T
Q  107 acgt 110  Q
    ||||    
T  25248857 acgt 25248860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 35359075 - 35359146
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    ||||||| |||||||  ||||| |||||||||| | |||| ||||||||||| ||| ||| |||||||||||    
T  35359075 cccctaatttttgcacatgtggcagttttggcccctaatgtcaattttgactcggtctacgctgacgtggca 35359146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 54464241 - 54464312
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||||||||||| ||||| ||||||| || |||| | ||||||||||| ||| ||| || ||||||||    
T  54464241 cccctaagttttgcatatgtggcagttttgacccccaaggtcaattttgactcggtctacgctcacgtggca 54464312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 52008365 - 52008418
Alignment:
Q  61 aattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||| ||| ||| |||||||| || ||||| |||||||||||||||||    
T  52008365 aattttgactcggtctacgctgacgtgacaccctaagtgaggtgtcacgtgtta 52008418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 791562 - 791478
Alignment:
Q  13 aaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaa 96  Q
    |||||||||| |||||||||||| ||||  | ||||||||  ||||| |||||| |||||| | ||| ||||||||||| |||||    
T  791562 aaaccgccccataagttttgcatctgtgacacttttggccctcaatgtcaatttcgacttgatctacgctgacgtggcaccctaa 791478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 3192839 - 3192947
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctc-caatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgt 105  Q
    ||||||||||| |||||||||||| ||  ||| ||||||| |||| | ||| | ||||||||||| ||| |||||| || ||||| ||||| |||||||     
T  3192839 ctacaaaaccgacccctaagtttttcaactgtagtagtttaggcccctcaaggtcaattttgactcggtctacactaacatggcaccctaagtgaggtgc 3192938  T
Q  106 cacgtgtta 114  Q
    ||| |||||    
T  3192939 cacatgtta 3192947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 25902600 - 25902556
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcc 51  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||    
T  25902600 ctacaaaaccgcctcataagttttgcatttgtggcagttttggcc 25902556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 50724842 - 50724890
Alignment:
Q  42 agttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||||| ||||||||| ||||||||| || | |||||||||||||    
T  50724842 agttttggcccccaatgccacttttgacttagtcttcactgacgtggca 50724890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 50788008 - 50787960
Alignment:
Q  42 agttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||||| ||||||||| ||||||||| || | |||||||||||||    
T  50788008 agttttggcccccaatgccacttttgacttagtcttcactgacgtggca 50787960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 14449531 - 14449424
Alignment:
Q  8 ctacaaaaccgc-ccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||||||| ||| ||| ||||||||||| | ||| ||||||| |    
T  14449531 ctacaaaaccgctccctaagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtttacgctgacgtggcaccataagtgaggtgcc 14449432  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  14449431 acgtgtta 14449424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 2836966 - 2837073
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||| ||||  |||||||||| |||| |||||||||||||  || ||||||||||||||| ||||| ||||||| |    
T  2836966 ctacaaaaccgccccctaagttttgcatgtgtgagagttttggcccccaaggccaattttgactcagtctacactgacgtggcaccctaagtgaggtgcc 2837065  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  2837066 acgtgtta 2837073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 44356644 - 44356538
Alignment:
Q  9 tacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||||||| |||||||||||| ||||| |||||||||| ||||  |||||||||||||||| |||  | |||||||| ||||| ||||||||||    
T  44356644 tacaaaaccgccccctaagttttgcatatgtggcagttttggcccccaagaccaattttgacttggtctacgataacgtggcaccctaagtgaggtgtca 44356545  T
Q  108 cgtgtta 114  Q
    |||||||    
T  44356544 cgtgtta 44356538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 1420791 - 1420684
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||||||||| |||| || || |||| ||||||||||||| |||  || ||||||||||| ||||| ||||||| |    
T  1420791 ctacaaaaccgccccataagttttgcatttgtggcagttatgacccccaaggccaattttgactcggtcaacgctgacgtggcaccctaagtgaggtgcc 1420692  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  1420691 acgtgtta 1420684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 6637310 - 6637203
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||| ||||||| ||||||||||||| ||| ||||||||||  ||||||||||||||||| ||| ||||||||| ||||| ||||| ||||||| |    
T  6637310 ctacaaaatcgccccttaagttttgcatttctggcagttttggcccacaatgccaattttgactcggtctacactgacatggcaccctaagtgaggtgcc 6637211  T
Q  107 acgtgtta 114  Q
    || |||||    
T  6637210 acatgtta 6637203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 14016792 - 14016899
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||||||| || |||||||||||||| ||  |||| |||||  ||| | |||||||||    
T  14016792 ctacaaaaccgccccttaagttttgtatttgtggcagttttggcctccaaggctaattttgacttggtctaggctgatgtggctcccttaatgaggtgtc 14016891  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  14016892 acgtgtta 14016899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 43074823 - 43074728
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||| |||||||||| |||| |||||||||||||  || ||| ||||||||||| ||||| ||||||| |||||||||    
T  43074823 cccctaagttttgcatctgtggcagttttggcccccaaggccaattttgactcagtctacgctgacgtggcaccctaagtgaggtgccacgtgtta 43074728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 51362606 - 51362702
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggt 103  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||| ||||  ||||||||||||  || ||||||||||||||| ||||| ||||||    
T  51362606 ctacaaaaccgccccctaagttttgcatatgtggcagttttggcccccaagaccaattttgactcagtctacactgacgtggcaccctaagtgaggt 51362702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 20112397 - 20112290
Alignment:
Q  8 ctacaaaaccgcccctaa-gttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| || ||||||||| ||||| |||||||||| |||| ||||||||||||| |||  || |||||||||||  |||| ||||||| |    
T  20112397 ctacaaaaccgcccccaaagttttgcatatgtggcagttttggcccccaaagccaattttgactcggtcaacgctgacgtggcactctaagtgaggtgcc 20112298  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  20112297 acgtgtta 20112290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 21597649 - 21597542
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| ||||||| |||||||| ||||| |||||||||| ||||  | |||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  21597649 ctacaaaaccgtcccctaaattttgcatatgtggcagttttggcccccaaaactaattttgactcggtctacgctgacgtggcaccctaaatgaggtgcc 21597550  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  21597549 acgtgtta 21597542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 23759821 - 23759715
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| ||||||||||||| || ||||  ||||||||||||||| ||||||||||||| | | ||  ||||||||||| ||||| ||||||| |    
T  23759821 ctacaaaaccgtcccctaagttttgtatctgtgacagttttggcctccaaggccaattttgactcgatctaagctgacgtggcaccctaagtgaggtgcc 23759722  T
Q  107 acgtgtt 113  Q
    |||||||    
T  23759721 acgtgtt 23759715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 29697590 - 29697695
Alignment:
Q  9 tacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||||||| |||||||||||| ||||| ||||||||  ||||| ||||||||||||   || ||| ||||||||||| ||||| ||||||||||    
T  29697590 tacaaaaccgccccctaagttttgcatctgtggcagttttggt-tccaaggccaattttgacccagtctacgctgacgtggcaccctaagtgaggtgtca 29697688  T
Q  108 cgtgtta 114  Q
    |||||||    
T  29697689 cgtgtta 29697695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 51371546 - 51371636
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtt 113  Q
    |||||||||||| | ||| ||||||| || |||||| ||||||||||| ||| ||||||||||||||| ||||| ||||||| ||||||||    
T  51371546 taagttttgcatatatggcagttttgacccccaatgtcaattttgactcggtctacactgacgtggcaccctaaatgaggtgccacgtgtt 51371636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 2654204 - 2654127
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaa 96  Q
    |||||||||||||||| ||||| ||||||| || |||| ||||||||||||||||| ||| ||||||||||| |||||    
T  2654204 cccctaagttttgcatatgtggcagttttgacccccaaggccaattttgacttggtctacgctgacgtggcaccctaa 2654127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 10059944 - 10059847
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtg 104  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||||  ||| ||||||||||||| ||| |||  |||||||||| ||||| |||||||    
T  10059944 ctacaaaaccgccccctaagttttgcatctgtggcagttttggccctcaaggccaattttgactcggtctacgttgacgtggcaccctaagtgaggtg 10059847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 2016870 - 2016954
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggt 103  Q
    |||||||||||||||  ||||| |||||||||| |||| ||||||||||||| ||| ||| ||||||||||| ||||| ||||||    
T  2016870 cccctaagttttgcacatgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggt 2016954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 11824256 - 11824351
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtg 104  Q
    ||||||||||||||||||||||||||| ||||| |||||||| | |||| |||||||||||||  || ||| |||| |||||| ||||| |||||||    
T  11824256 ctacaaaaccgcccctaagttttgcatgtgtggcagttttggtc-ccaaggccaattttgactcagtctacgctgatgtggcaccctaagtgaggtg 11824351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 12719680 - 12719585
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||| |||||||||||||||  |||||||||||| ||| ||| |||| |||||| || || ||||||| ||| |||||    
T  12719680 cccctaagttttgcatctgtggcagttttggcctccaagaccaattttgactcggtctacgctgatgtggcaccccaagtgaggtgccacatgtta 12719585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 6207421 - 6207320
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||||||||| | |||||||| |||| | ||||||||||||||| ||| || | ||||||  |||| |||| ||||    
T  6207421 ctacaaaaccgccccctaagttttgcatttgtggcaattttggcccccaaggtcaattttgacttggtctacgctaatgtggcactctaagtgagatgtc 6207322  T
Q  107 ac 108  Q
    ||    
T  6207321 ac 6207320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 54855373 - 54855477
Alignment:
Q  10 acaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcac 108  Q
    ||||||| |||||| ||||||||||| | |||||||||||| | |||| ||||||||||||| ||| ||| ||||||||||| ||||| ||||||| |||    
T  54855373 acaaaactgccccttaagttttgcatct-tggtagttttggtccccaaagccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgccac 54855471  T
Q  109 gtgtta 114  Q
     |||||    
T  54855472 ttgtta 54855477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 16292335 - 16292442
Alignment:
Q  8 ctacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctcca-atgccaattttgacttggtatacactgacgtggcatcctaattgaggtgt 105  Q
    |||||||| ||||| ||||||||||||  ||||| |||||||||| ||| |||  |||||||||| ||| ||||||||||||||  ||||| ||||||||    
T  16292335 ctacaaaatcgccctctaagttttgcacatgtggcagttttggcccccatatgt-aattttgactcggtctacactgacgtggccccctaagtgaggtgt 16292433  T
Q  106 cacgtgtta 114  Q
    |||||||||    
T  16292434 cacgtgtta 16292442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 25909566 - 25909637
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    ||||||||||||||| ||||||  ||||||||| |||| ||||||||||||| ||| ||| |||||||||||    
T  25909566 cccctaagttttgcacttgtggaggttttggcccccaaggccaattttgactcggtctacgctgacgtggca 25909637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 27978774 - 27978841
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||||||||||||| ||||||| || |||| ||||||||||||| ||| ||| |||||||||||    
T  27978774 taagttttgcatttgtggcagttttgacccccaaggccaattttgactcggtctacgctgacgtggca 27978841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 49185664 - 49185743
Alignment:
Q  35 ttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||| |||||||||| |||| ||||||||||||||||| ||| ||||||||||| |||||  |||||| ||| |||||    
T  49185664 ttgtggcagttttggcccccaaggccaattttgacttggtctacgctgacgtggcaccctaagcgaggtgccacatgtta 49185743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 50769431 - 50769537
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||||||||||||||||||||| | ||| |||||| ||| | || | ||||||||||| ||  ||| ||||||| ||| ||| | ||||||| ||    
T  50769431 ctacaaaaccgcccctaagttttgcatctatggcagttttagcccctaaggtcaattttgactcggcctacgctgacgtagcaccctgagtgaggtgcca 50769530  T
Q  108 cgtgtta 114  Q
    |||||||    
T  50769531 cgtgtta 50769537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 53312366 - 53312460
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtt 113  Q
    ||||||| |||||||  ||||| |||||||||| |||| |||||||| ||||  || ||| ||||||||||| ||||| ||||||| ||||||||    
T  53312366 cccctaaattttgcacatgtggcagttttggcccccaaggccaatttggactcagtctacgctgacgtggcaccctaagtgaggtgccacgtgtt 53312460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 1571481 - 1571562
Alignment:
Q  26 gttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||| ||||| ||||||||| |||||  ||||||| |||| ||  ||||||||||||||| ||||| ||||||||||    
T  1571481 gttttgcatatgtggcagttttggcttccaaaaccaatttagactcggcctacactgacgtggcaccctaagtgaggtgtca 1571562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 51233547 - 51233651
Alignment:
Q  8 ctacaaaaccgcc-cctaagttttgcatttgtggt-agttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgt 105  Q
    |||||| |||||| ||||||||||||| | ||||  |||||||||| |||| |||||||| |||||||| ||| ||||||||||| ||||| |||||||     
T  51233547 ctacaataccgcctcctaagttttgcactcgtggacagttttggcccccaa-gccaatttggacttggtctacgctgacgtggcaccctaagtgaggtgc 51233645  T
Q  106 cacgtg 111  Q
    ||||||    
T  51233646 cacgtg 51233651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 4796271 - 4796180
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||  ||||| |||||||||| ||||   ||||||||||| ||| ||| ||||||||||| ||||| ||||||| ||| |||||    
T  4796271 taagttttgcacctgtggcagttttggcccccaaaatcaattttgactcggtctacgctgacgtggcaccctaagtgaggtgccacttgtta 4796180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 21871634 - 21871527
Alignment:
Q  8 ctacaaaaccgcc-cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||| |||||||||||||| | |||||||||||||| ||||   ||||||| ||| ||| ||| ||||| || ||  |||| || ||||||    
T  21871634 ctacaaaaccgcctcctaagttttgcatctttggtagttttggcccccaaaatcaattttaactcggtctacgctgacatgacactctaagtggggtgtc 21871535  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  21871534 acgtgtta 21871527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 21927495 - 21927388
Alignment:
Q  8 ctacaaaaccgcc-cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||| |||||||||||||| | |||||||||||||| ||||   ||||||| ||| ||| ||| ||||| || ||  |||| || ||||||    
T  21927495 ctacaaaaccgcctcctaagttttgcatctttggtagttttggcccccaaaatcaattttaactcggtctacgctgacatgacactctaagtggggtgtc 21927396  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  21927395 acgtgtta 21927388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 52463034 - 52462928
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||  ||| |||||||||||| | ||  |||||||||| ||||  |||||||| ||  ||| |||||||||||| || || || ||||||||||    
T  52463034 ctacaaaacgccccttaagttttgcatctatgacagttttggcccccaaaaccaattttaacccggtctacactgacgtgacacccaaagtgaggtgtca 52462935  T
Q  108 cgtgtta 114  Q
    |||||||    
T  52462934 cgtgtta 52462928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 8070694 - 8070799
Alignment:
Q  9 tacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcac 108  Q
    |||||||| |||| ||| ||||| || ||||| |||||||||| || |   ||||||| ||||||| ||| ||||||||||| || || ||||||| |||    
T  8070694 tacaaaactgcccataaattttgtatctgtggcagttttggccccctagatcaattttaacttggtctacgctgacgtggcaccccaagtgaggtgccac 8070793  T
Q  109 gtgtta 114  Q
    ||||||    
T  8070794 gtgtta 8070799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 8965751 - 8965674
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaa 96  Q
    |||||||||||||||| ||||| |||||||| | |||||| ||||||||||| ||| |||  ||| |||||| |||||    
T  8965751 cccctaagttttgcatctgtggcagttttggtccccaatgtcaattttgactcggtctacgttgatgtggcaccctaa 8965674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 21451539 - 21451627
Alignment:
Q  21 cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgt 110  Q
    ||||| ||||||| |||||| |||||||||| | || || |||||||||| ||| |||||||||||| || ||||| ||||||| |||||    
T  21451539 cctaaattttgcacttgtggcagttttggccac-aaggcgaattttgactcggtctacactgacgtgacaccctaagtgaggtgccacgt 21451627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 54984068 - 54983983
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtg 104  Q
    ||||||| |||||||  ||||  |||||||||  |||||| |||||||| |||||| ||| ||||||||||| ||||| |||||||    
T  54984068 cccctaaattttgcacatgtgtcagttttggcacccaatgtcaattttggcttggtctacgctgacgtggcaccctaagtgaggtg 54983983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 31553477 - 31553382
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||| |||| ||| | ||| |||||||||| |||| ||||||||||||| ||| ||| || ||| |||| ||||| |||||||  ||||||||    
T  31553477 cccctaaattttacatctatggcagttttggcccccaaggccaattttgactcggtctacgctaacgcggcaccctaagtgaggtgctacgtgtta 31553382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 53924986 - 53924891
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||||||||  ||||||| ||  ||| | ||||||||||| ||| |||  ||| ||| || ||||| |||| ||||||||||||    
T  53924986 cccctaagttttgcatttgtgacagttttgaccctcaaggtcaattttgactcggtctacgttgatgtgacaccctaagtgagatgtcacgtgtta 53924891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 11983637 - 11983580
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaatttt 66  Q
    |||||||||||||||||||||||||| | || | |||||||||| |||| |||||||||    
T  11983637 ctacaaaaccgcccctaagttttgcaatcgtagaagttttggcc-ccaaggccaatttt 11983580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 21322944 - 21322895
Alignment:
Q  21 cctaagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    |||||||||||||| ||||  ||||||| || ||||||||||||||||||    
T  21322944 cctaagttttgcatatgtgacagttttgacccccaatgccaattttgact 21322895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 35383992 - 35383899
Alignment:
Q  21 cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||||| |  ||| |||||||||| |||| ||||||||||| | ||| |||  |||||||||| | ||| ||||||| |||| ||||    
T  35383992 cctaagttttgcactattggcagttttggcccccaaggccaattttgattcggtctacgttgacgtggcaccgtaagtgaggtgccacgcgtta 35383899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 40489279 - 40489360
Alignment:
Q  9 tacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||| ||||||| || ||| || | ||| |||||||||| ||||||||| ||||||||| || | | |||||||||||    
T  40489279 tacaaaacagcccctatgtattggatctttggcagttttggcccccaatgccacttttgacttagtcttcgctgacgtggca 40489360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 47999596 - 47999693
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtg 104  Q
    |||||||||||| || |||||||| ||| ||||| ||||||| || | || ||||||||||| | ||| ||| ||||||||||| | ||| |||||||    
T  47999596 ctacaaaaccgctccataagttttacatctgtggcagttttgacccctaaggccaattttgattcggtctacgctgacgtggcaccttaagtgaggtg 47999693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 34567848 - 34567800
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||||||||| ||||| |||||||||| |||||| |||||| ||||    
T  34567848 ctaagttttgcatatgtggcagttttggcccccaatgtcaatttcgact 34567800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 44932632 - 44932668
Alignment:
Q  38 tggtagttttggcctccaatgccaattttgacttggt 74  Q
    |||||||||||||| |||| |||||||||||||||||    
T  44932632 tggtagttttggcccccaaggccaattttgacttggt 44932668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 8857114 - 8857220
Alignment:
Q  9 tacaaaaccgcc-cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||  || |||| |||||| | ||| ||||||| ||    
T  8857114 tacaaaaccgcctcctaagttttgcatttgtggcagttttggcccccaatgccaattttgacttggtcaacgctgatgtggcaccttaaatgaggtgcca 8857213  T
Q  108 cgtgtta 114  Q
    |||||||    
T  8857214 cgtgtta 8857220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 24472692 - 24472587
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||  || |||||| |||||||| ||||| ||||||| ||    
T  24472692 ctacaaaacc-cccctaagttttgcatctgtggcagttttggccgccaatgccaattttgactccgtctacactaacgtggcaccctaagtgaggtgcca 24472594  T
Q  108 cgtgtta 114  Q
    |||||||    
T  24472593 cgtgtta 24472587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 44617985 - 44617879
Alignment:
Q  9 tacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||||||| |||||||||||||||||| |||||||||| ||||  |||||||||||| ||| ||| ||||||||||| ||||| ||||||||||    
T  44617985 tacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaagaccaattttgactcggtctacgctgacgtggcaccctaaatgaggtgtca 44617886  T
Q  108 cgtgtta 114  Q
    | |||||    
T  44617885 cctgtta 44617879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 27489511 - 27489606
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||| |||||||| ||||| ||||||||||||||| | ||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||||||    
T  27489511 cccctaacttttgcatctgtggcagttttggcctccaagggcaattttgactcggtttacgctgacgtggcatcctaagtgaggtgacacgtgtta 27489606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 37431610 - 37431717
Alignment:
Q  8 ctacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||| |||| ||||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  37431610 ctacaaaatcgcccactaagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 37431709  T
Q  107 acgtgtta 114  Q
    || |||||    
T  37431710 acatgtta 37431717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 37803190 - 37803296
Alignment:
Q  8 ctacaaaaccgcc-cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||| |||||||||||||||||||| ||||||| || |||||| ||||||||||| ||| ||| ||||||||||| ||||| | |||||||    
T  37803190 ctacaaaaccgcctcctaagttttgcatttgtggcagttttgacc-ccaatgtcaattttgactcggtctacgctgacgtggcaccctaagtaaggtgtc 37803288  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  37803289 acgtgtta 37803296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 43028861 - 43028967
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||| |||||||||||||||| ||||| |||||||||||| |  ||||||||||||| ||| ||| ||||||||||| ||||| ||||||| ||    
T  43028861 ctacaaaaccccccctaagttttgcatctgtggcagttttggcctctagggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcca 43028960  T
Q  108 cgtgtta 114  Q
     ||||||    
T  43028961 agtgtta 43028967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 5470584 - 5470478
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||||| ||||||| ||| ||||| |||||||||| |||| ||||||||||||| ||| ||  ||||||||||| ||||| ||||||| |    
T  5470584 ctacaaaaccgccccttaagttttacatctgtggcagttttggcccccaaggccaattttgactcggtctatgctgacgtggcaccctaagtgaggtgcc 5470485  T
Q  107 acgtgtt 113  Q
    |||||||    
T  5470484 acgtgtt 5470478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 15022905 - 15023011
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttgg-cctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||||||| |||||||||||||| |||||||| || |||| ||||| |||||||  || ||| ||||| ||||| ||||||||||||| |    
T  15022905 ctacaaaaccgcccctaaattttgcatttgtggcagttttggccccccaaggccaaatttgactcagtctacgctgacatggcaccctaattgaggtgcc 15023004  T
Q  107 acgtgtt 113  Q
    |||||||    
T  15023005 acgtgtt 15023011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 34760914 - 34761020
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||| ||||  ||||||||||| |||| ||  ||||||||||| ||||| |||||||||    
T  34760914 ctacaaaaccgccccctaagttttgcatatgtggcagttttggcccccaagaccaattttgacgtggtctatgctgacgtggcaccctaagtgaggtgtc 34761013  T
Q  107 acgtgtt 113  Q
    || ||||    
T  34761014 acatgtt 34761020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 25333577 - 25333670
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgt 112  Q
    |||||||||||||||  ||||| |||||||| |||||| ||||||||||||||||| ||| ||||||||||| ||||| | ||||| |||||||    
T  25333577 cccctaagttttgcacctgtggcagttttggtctccaaggccaattttgacttggtctacgctgacgtggcaccctaagtaaggtgccacgtgt 25333670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 6592795 - 6592899
Alignment:
Q  9 tacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcac 108  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||  |||||| ||||||||||  || ||| ||||| | ||| ||||| ||||||| |||    
T  6592795 tacaaaactgcccctaagttttgcatatgtggcagttttggccctcaatgctaattttgactcagtctacgctgacattgcaccctaagtgaggtgccac 6592894  T
Q  109 gtgtt 113  Q
    |||||    
T  6592895 gtgtt 6592899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 34679164 - 34679271
Alignment:
Q  9 tacaaaaccgcccc--taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||  |||||||||||  ||||| |||||||||||||||  | |||||||||  ||| ||| ||||||||||| ||||| ||||||| |    
T  34679164 tacaaaaccgcccccctaagttttgcacatgtggcagttttggcctccaagacaaattttgacccggtctacgctgacgtggcaccctaagtgaggtgcc 34679263  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  34679264 acgtgtta 34679271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 39918516 - 39918608
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||||| |||||  ||||||||| |||| ||||||||||||| ||| | | ||||||||||| ||||| ||||||| |||||||||    
T  39918516 ctaagttttgcatatgtggctgttttggcccccaaggccaattttgactcggtcttcgctgacgtggcaccctaagtgaggtgccacgtgtta 39918608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 41196461 - 41196370
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||| ||||| |||||| ||| |||||| |||||| |||||||| ||| ||||||||||| ||||| ||||||| ||| |||||    
T  41196461 taagttttgcatatgtggaagtttttgcccccaatgtcaatttagacttggtctacgctgacgtggcaccctaagtgaggtgccacatgtta 41196370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 14489281 - 14489387
Alignment:
Q  9 tacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||||||| |||||||||||  ||||| ||||||| |||||||  |||||||||||| ||| ||| |||| |||||| ||||  ||||||| ||    
T  14489281 tacaaaaccgccccctaagttttgcacctgtggcagttttgacctccaagaccaattttgactcggtctacgctgatgtggcaccctacgtgaggtgcca 14489380  T
Q  108 cgtgtta 114  Q
    |||||||    
T  14489381 cgtgtta 14489387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 14943792 - 14943686
Alignment:
Q  8 ctacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||| ||||||||||||  ||||| | |||||||| |||| || |||||||||| ||| ||| |||| |||||| ||||| ||||||| |    
T  14943792 ctacaaaaccgccctctaagttttgcacctgtggcatttttggcccccaaggctaattttgactcggtctacgctgatgtggcaccctaagtgaggtgcc 14943693  T
Q  107 acgtgtt 113  Q
    |||||||    
T  14943692 acgtgtt 14943686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 4576774 - 4576683
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||| || |||  |||||||||| ||| |||||||||||||| ||| ||| ||| ||||||| ||||| ||||||| |||||||||    
T  4576774 taagttttgcgttcgtgacagttttggcccccactgccaattttgactcggtctacgctggcgtggcaccctaagtgaggtgccacgtgtta 4576683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 32969636 - 32969704
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtg 87  Q
    |||||||||||| ||||||||| |||||||||  |||| ||||||||||||| ||| ||| ||||||||    
T  32969636 cccctaagtttttcatttgtggcagttttggctcccaaggccaattttgactcggtctacgctgacgtg 32969704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 5008520 - 5008441
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgag 101  Q
    ||||||||||||||||||| | ||||||||  ||| | ||||||||||| ||| ||| ||||||||||| ||||| ||||    
T  5008520 ctaagttttgcatttgtggcaattttggccctcaaggtcaattttgactcggtctacgctgacgtggcaccctaagtgag 5008441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 35718712 - 35718775
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||||||| ||||||  |||||||| ||||| ||||||||||||||| |||||||||||||    
T  35718712 ctacaaaaccgtcccctacattttgcatctgtggcagttttggcctccaaggccaattttgact 35718775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 25411609 - 25411691
Alignment:
Q  9 tacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||||||||| |||||||||||| ||||| ||||||  || ||||| |||||||||||| ||| ||  |||||||||||    
T  25411609 tacaaaaccgccccctaagttttgcatctgtggcagttttcacccccaataccaattttgactcggtctatgctgacgtggca 25411691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 5362407 - 5362315
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaat-gccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||| ||  ||||| |||||||||||||||  |||||||||||||  || ||| |||||||| |||||||| ||||||| ||| |||||    
T  5362407 taagttttacaactgtggcagttttggcctccaaaagccaattttgactcagtctacgctgacgtgacatcctaagtgaggtgccacatgtta 5362315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 18969326 - 18969234
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||| ||||| ||||||||  |||||| || |||| ||||||||||||| ||  ||| |||||||| ||  |||| |||||||||||||||||    
T  18969326 ctaaattttgtatttgtggctgttttgacccccaaggccaattttgactaggcctacgctgacgtgacactctaaatgaggtgtcacgtgtta 18969234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 34600649 - 34600697
Alignment:
Q  42 agttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||||| |||| ||||||||||||||||| | |||||||||||||    
T  34600649 agttttggcccccaaggccaattttgacttggtcttcactgacgtggca 34600697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 4925506 - 4925613
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| |||||||||||||||| ||||| ||||||| || | ||  |||||||||  |  || ||| ||||||||||| ||||| | ||||| |    
T  4925506 ctacaaaaccgtcccctaagttttgcatatgtggcagttttgacccctaagaccaattttggttctgtctacgctgacgtggcaccctaagtaaggtgcc 4925605  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  4925606 acgtgtta 4925613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 16043257 - 16043206
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    |||||| ||||||||| ||||| |||||||||| |||| |||||||||||||    
T  16043257 cccctatgttttgcatctgtggcagttttggcccccaaggccaattttgact 16043206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 19895845 - 19895754
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||| ||| ||||| |||||| ||| |||||||||||||||| | ||| ||  ||||||| ||| ||||| ||||||| || ||||||    
T  19895845 taagttttacatatgtggcagttttagcccccaatgccaattttgattcggtttatgctgacgtagcaccctaagtgaggtgccatgtgtta 19895754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 2609336 - 2609230
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||| |||||| |||||||| ||| ||||| ||||||| || ||||   ||||||||||| ||| ||| |||| |||||| ||||| |||| || |    
T  2609336 ctacaaaatcgccccataagttttacatatgtggcagttttgacccccaagatcaattttgactcggtctacgctgatgtggcaccctaagtgagttgcc 2609237  T
Q  107 acgtgtt 113  Q
    |||||||    
T  2609236 acgtgtt 2609230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 35180501 - 35180449
Alignment:
Q  38 tggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    ||||||||||||||||||| |||| ||||||||| || | | |||||||||||    
T  35180501 tggtagttttggcctccaaggccacttttgacttagtcttcgctgacgtggca 35180449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 42274735 - 42274703
Alignment:
Q  42 agttttggcctccaatgccaattttgacttggt 74  Q
    ||||||||||||||| |||||||||||||||||    
T  42274735 agttttggcctccaaggccaattttgacttggt 42274703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 76941 - 77035
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||||||||| ||||||| || |||| ||||||||||||| ||| ||| ||||||||||| ||||| |||||||||||||||||    
T  76941 cccctaagttttgcatttgtggcagttttgccc-ccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgtcacgtgtta 77035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 2974702 - 2974797
Alignment:
Q  10 acaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtg 104  Q
    ||||||||||||| |||||||||||| ||||| |||||||||| |||||||||||||||||| ||| ||| ||||||||||| ||||| |||||||    
T  2974702 acaaaaccgccccctaagttttgcatctgtggcagttttggcccccaatgccaattttgactcggtctacgctgacgtggcaccctaagtgaggtg 2974797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 20629991 - 20629884
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||   |||||||||||| | | ||| ||||||||||| ||||| ||||||| |    
T  20629991 ctacaaaaccgccccctaagttttgcatttgtggaagttttggcctccaggaccaattttgactcgatctacgctgacgtggcaccctaagtgaggtgcc 20629892  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  20629891 acgtgtta 20629884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 26702504 - 26702609
Alignment:
Q  9 tacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcac 108  Q
    |||||||||||||| ||||||||||||||||| |||||||||| ||||  |||||||||| | ||| ||  ||||||||||| ||||| ||||||| |||    
T  26702504 tacaaaaccgcccccaagttttgcatttgtggcagttttggcccccaagaccaattttgattcggtctatcctgacgtggcaccctaagtgaggtgccac 26702603  T
Q  109 gtgtta 114  Q
    ||||||    
T  26702604 gtgtta 26702609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 26972237 - 26972342
Alignment:
Q  9 tacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcac 108  Q
    |||||||||||||| ||||||||||||||||| |||||||||| ||||  |||||||||| | ||| ||  ||||||||||| ||||| ||||||| |||    
T  26972237 tacaaaaccgcccccaagttttgcatttgtggcagttttggcccccaagaccaattttgattcggtctatcctgacgtggcaccctaagtgaggtgccac 26972336  T
Q  109 gtgtta 114  Q
    ||||||    
T  26972337 gtgtta 26972342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 9852865 - 9852960
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||| |||||||||  |||| ||||||||||||||| | ||| ||||||||||| ||||| ||||||| |||||||||    
T  9852865 cccctaagttttgcatctgtggcagttttggctcccaaggccaattttgacttgatctacgctgacgtggcaccctaagtgaggtgccacgtgtta 9852960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 27904730 - 27904623
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| ||||||||||| |||||| ||||||| || ||||  |||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  27904730 ctacaaaaccgccccctaagttttgcacttgtggcagttttgtcccccaagaccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 27904631  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  27904630 acgtgtta 27904623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 12406285 - 12406180
Alignment:
Q  10 acaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcac 108  Q
    ||||||||||||| |||||||| ||| ||||| |||||||||| |||| |||||||||||||  || ||| ||||||||||| ||||| ||||||| |||    
T  12406285 acaaaaccgccccctaagttttacatctgtggcagttttggcccccaaggccaattttgactcagtctacgctgacgtggcaccctaagtgaggtgccac 12406186  T
Q  109 gtgtta 114  Q
    ||||||    
T  12406185 gtgtta 12406180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3333948 - 3333841
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||| || |||||||||||| ||||| |||||||||| |||| | ||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  3333948 ctacaaaaccgctccataagttttgcatatgtggcagttttggcccccaaggtcaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 3333849  T
Q  107 acgtgtta 114  Q
    | ||||||    
T  3333848 atgtgtta 3333841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 31080555 - 31080650
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||| |||||||||| |||| ||||||||| ||| ||| ||  ||||||||||| ||||| ||||||| |||||||||    
T  31080555 cccctaagttttgcatctgtggcagttttggcccccaaggccaattttaactcggtctatgctgacgtggcaccctaagtgaggtgccacgtgtta 31080650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 34320182 - 34320111
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||||||| ||||||||| |||||||||| |||| | ||||||||||||||| |||||||||||||||    
T  34320182 cccctaagttttacatttgtggcagttttggcccccaaagtcaattttgacttggtctacactgacgtggca 34320111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 37897964 - 37897902
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||    
T  37897964 ctacaaaaccgcccctaagttttgcatatgtggcagttttggcctccaagaccaattttgact 37897902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 3999331 - 3999238
Alignment:
Q  21 cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||| ||| ||||| |||||||||| |||| ||||||||||||||||| ||| ||||||||||| | ||| ||||||| ||| |||||    
T  3999331 cctaagttttacatatgtggcagttttggcccccaaggccaattttgacttggtctacgctgacgtggcaccttaagtgaggtgccacatgtta 3999238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 25910790 - 25910897
Alignment:
Q  8 ctacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||| ||| |||| |||||||  ||||| |||||||||| |||| | ||||||||||| ||| ||| ||||||||||| ||||| |||||||||    
T  25910790 ctacaaaaccaccctctaaattttgcacctgtggcagttttggcccccaaggtcaattttgactcggtctacgctgacgtggcaccctaagtgaggtgtc 25910889  T
Q  107 acgtgtta 114  Q
    || |||||    
T  25910890 acatgtta 25910897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 32391966 - 32391859
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||||| ||||||||||| ||||  ||||||| | |||||  |||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  32391966 ctacaaaaccgccccttaagttttgcatgtgtgacagttttgacatccaagaccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 32391867  T
Q  107 acgtgtta 114  Q
    || |||||    
T  32391866 acatgtta 32391859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 16132812 - 16132918
Alignment:
Q  9 tacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||||||| |||||||||||  | ||| |||||||| | |||| |||||||||||||| || ||| |||| |||||||||||| ||||||| ||    
T  16132812 tacaaaaccgccccctaagttttgcacctatggcagttttggtccccaaggccaattttgactttgtctacgctgatgtggcatcctaagtgaggtgcca 16132911  T
Q  108 cgtgtta 114  Q
     ||||||    
T  16132912 tgtgtta 16132918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 19131747 - 19131664
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    ||||||||||||||| |||||||||||| ||||  |||||||||| | || ||||||||||||| ||| ||| |||||||||||    
T  19131747 ctacaaaaccgccccctaagttttgcatctgtgacagttttggccccgaaggccaattttgactcggtctacgctgacgtggca 19131664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 20512275 - 20512370
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||  ||||||||||||| || ||||  |||||||||||| ||| ||| || || ||||| ||||| ||||||| |||||||||    
T  20512275 cccctaagttttgcacctgtggtagttttgacccccaagaccaattttgactcggtctacgctaacatggcaccctaagtgaggtgccacgtgtta 20512370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 25363904 - 25363991
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| ||||||||||||||||| | || | ||||||||| | ||| ||| |||||||| || ||||| |||||||||    
T  25363904 cccctaagttttgcaattgtggtagttttggccccaaaagtcaattttgattcggtctacgctgacgtgacaccctaaatgaggtgtc 25363991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 28446087 - 28446178
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||||  || ||||||| | || ||||||||||||| ||||||| ||||| || || ||||  |||||||||||||||||    
T  28446087 taagttttgcatttgtgacagctttggcccctaaggccaattttgactcggtatacgctgacctgacaccctacgtgaggtgtcacgtgtta 28446178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 36798250 - 36798344
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||| |||||||||| ||||  |||| ||||||| ||| |||||||||||||||  |||| ||||||| ||| |||||    
T  36798250 cccctaagttttgcatctgtggcagttttggcccccaagaccaa-tttgactcggtctacactgacgtggcactctaagtgaggtgccacatgtta 36798344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 43098273 - 43098167
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||||| |||||||||||||  ||| | |||||||||| || ||  |||||||||||  || ||| ||||||||||| ||||| ||||||| |     
T  43098273 ctacaaaaccgcgcctaagttttgcacctgtagcagttttggcccccgatatcaattttgactcagtctacgctgacgtggcaccctaagtgaggtgccg 43098174  T
Q  108 cgtgtta 114  Q
    |||||||    
T  43098173 cgtgtta 43098167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 19340997 - 19340904
Alignment:
Q  21 cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||| ||||| |||||| | | |||| ||||||||||||| |||  ||  |||||||||| ||||| ||||||| |||||||||    
T  19340997 cctaagttttgcatctgtggcagttttagtccccaaagccaattttgactcggtcaacgttgacgtggcaccctaaatgaggtgccacgtgtta 19340904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 40133144 - 40133073
Alignment:
Q  18 gcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    ||||||||||||| ||||||||  |||||||||| |||||||||||||||||  ||| ||| |||||||||||    
T  40133144 gcccctaagttttacatttgtgacagttttggcc-ccaatgccaattttgacccggtctaccctgacgtggca 40133073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 18403066 - 18403157
Alignment:
Q  20 ccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtg 111  Q
    ||||||||||||||| | ||| ||||||| || ||||  ||||||||||||  || |||  |||||||||| ||||| ||||||||||||||    
T  18403066 ccctaagttttgcatctctggcagttttgacccccaagaccaattttgactcagtctacgttgacgtggcaccctaagtgaggtgtcacgtg 18403157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 22300667 - 22300774
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| |||| |||||||| || ||||| ||||||| | |||||  |||||||||||| ||| |||  |||||||||| ||||| ||||||| |    
T  22300667 ctacaaaaccgtcccttaagttttgtatatgtggcagttttgacttccaagaccaattttgactcggtctacgttgacgtggcaccctaagtgaggtgcc 22300766  T
Q  107 acgtgtta 114  Q
    || |||||    
T  22300767 acatgtta 22300774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 35166374 - 35166469
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||  |||||  |||||||||| ||||| ||||||||||| ||| ||| ||||| || || ||||| ||||||| ||| |||||    
T  35166374 cccctaagttttgcacatgtggcggttttggccttcaatgtcaattttgactcggtctacgctgacatgacaccctaagtgaggtgccacatgtta 35166469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 24779341 - 24779447
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||||| | ||||||||||| | | ||| ||||||||   ||||  |||||||||||| ||| ||| ||||||||||| || || |||| |||||    
T  24779341 ctacaaaaccgtctctaagttttgcctctatggcagttttggttcccaaaaccaattttgactcggtctacgctgacgtggcaccccaagtgagttgtca 24779440  T
Q  108 cgtgtta 114  Q
    |||||||    
T  24779441 cgtgtta 24779447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 40276276 - 40276170
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| |||||||||||||||| ||||| | ||||| || |||| || |||||||||  ||| ||| |||||||| || ||||| ||||||| |    
T  40276276 ctacaaaaccgtcccctaagttttgcatatgtggcaattttgacccccaaggctaattttgacccggtctacgctgacgtgacaccctaagtgaggtgcc 40276177  T
Q  107 acgtgtt 113  Q
    || ||||    
T  40276176 acatgtt 40276170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 26563075 - 26563162
Alignment:
Q  27 ttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||| ||||| | |||||||| |||| | ||||||||||| ||| | | ||||||||||| ||||  ||||||| |||||||||    
T  26563075 ttttgcatctgtggcaattttggcccccaaggtcaattttgactcggtttccgctgacgtggcaccctacgtgaggtgccacgtgtta 26563162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 40132981 - 40133030
Alignment:
Q  17 cgcccctaagttttgcatttgtggtagttttggcctccaatgccaatttt 66  Q
    ||||||||||||||||| ||||||  ||||||| |||||| |||||||||    
T  40132981 cgcccctaagttttgcaattgtggcggttttggtctccaaggccaatttt 40133030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 49426223 - 49426133
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |||||||| || ||||| | |||||||||||||||    
T  49426223 taagttttgcatttgtggcagttttggcc-ccaatgccaattttgacttggtctacgctgacgtgacaccctaagtaaggtgtcacgtgtta 49426133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 3377568 - 3377668
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||| ||| ||| |||||||| |  ||||| |||||||||    
T  3377568 ctacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtgacgccctaagtgaggtgtc 3377667  T
Q  107 a 107  Q
    |    
T  3377668 a 3377668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 16874750 - 16874646
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||  |||| ||||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  16874750 ctacaaaaccgccccataagttttgcatctgtggcagttttggctcccaaggccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 16874651  T
Q  107 acgtg 111  Q
    |||||    
T  16874650 acgtg 16874646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 17760763 - 17760858
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||| |||||||||| ||||   ||||||||||| ||| ||||||||||||||| ||||| ||||||| |||||||||    
T  17760763 cccctaagttttgcatatgtggcagttttggccaccaagatcaattttgactcggtctacactgacgtggcaccctaaatgaggtgccacgtgtta 17760858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 39642455 - 39642349
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||| ||| ||  |||||| |||| ||||| ||| ||| |    
T  39642455 ctacaaaaccgccccctaagttttgcatttgtggcagttttggcccccaaagccaattttgactcggtctatgctgacgcggcaccctaagtgaagtgcc 39642356  T
Q  107 acgtgtt 113  Q
    |||||||    
T  39642355 acgtgtt 39642349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 41997876 - 41997791
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtg 104  Q
    |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||| ||| ||| |||||||| || ||||| |||||||    
T  41997876 cccctaagctttgcatctgtggcagttttggcctccaaggccaattttgactcggtctacgctgacgtgacaccctaagtgaggtg 41997791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 14978875 - 14978970
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||  |||||||||||||||| | || ||||||||||| ||||| ||| |||| |||||| ||||| ||||||| ||| |||||    
T  14978875 cccctaagttttgcacctgtggtagttttggccccaaaggccaattttgaattggtctacgctgatgtggcaccctaagtgaggtgccacatgtta 14978970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 30849477 - 30849370
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| |||||||||||||||| |||| |||||||||||  ||| ||||||||| ||||||| ||  |||||||  || ||||| ||||||| |    
T  30849477 ctacaaaaccgtcccctaagttttgcatctgtgatagttttggcccacaaggccaattttaacttggtctatgctgacgtaacaccctaagtgaggtgcc 30849378  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  30849377 acgtgtta 30849370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 46572893 - 46572998
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| |||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||| ||| |||| |||  | ||||| ||||||| |    
T  46572893 ctacaaaaccgtcccctaagttttgcatttgtggcagttt-ggcc-ccaaggccaattttgacttggtctacgctgatgtgagaccctaagtgaggtgcc 46572990  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  46572991 acgtgtta 46572998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 50401438 - 50401540
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||||||||  |||||||||| |||| ||||||||||||| ||| ||| |||||||| || | ||| ||||||| |    
T  50401438 ctacaaaaccgccccctaagttttgcatttgtgacagttttggcc-ccaaggccaattttgactcggtctactctgacgtgacaccttaaatgaggtgcc 50401536  T
Q  107 acgt 110  Q
    ||||    
T  50401537 acgt 50401540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 14190772 - 14190706
Alignment:
Q  24 aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||| |||| ||||||    
T  14190772 aagttttgcatctgtggcagttttggcctccaatgccaattttgactcggtctacgctgatgtggca 14190706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 46912422 - 46912332
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtt 113  Q
    |||||||||||| | ||| |||||||||| | ||||||||||||||||  || ||| ||||||||||| ||||| ||||||| ||||||||    
T  46912422 taagttttgcatctatggcagttttggcccctaatgccaattttgactctgtttacgctgacgtggcaccctaaatgaggtgccacgtgtt 46912332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 16298292 - 16298197
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||| ||||||||| ||||| |||||||||  |||||  ||||||||||||||| ||| |||||||| ||  |||| ||||||| |||||||||    
T  16298292 cccctatgttttgcatctgtggcagttttggctcccaatatcaattttgacttggtctacgctgacgtgacactctaagtgaggtgccacgtgtta 16298197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 45739002 - 45739105
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||||| ||||||||||| | ||| |||||||||| |||| | ||||||||||| ||| ||  || |||||||| ||||| ||||||| |    
T  45739002 ctacaaaaccgccccttaagttttgcatctatggcagttttggcccccaaagtcaattttgactcggtctatgctaacgtggcaccctaagtgaggtgcc 45739101  T
Q  107 acgt 110  Q
    ||||    
T  45739102 acgt 45739105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 1096536 - 1096630
Alignment:
Q  10 acaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggt 103  Q
    |||||||||||| |||||||| |||| ||||| |||||||||| | |  | ||||||||||| ||| ||| ||||||||||||||||| ||||||    
T  1096536 acaaaaccgccctctaagtttcgcatctgtggcagttttggcccctagggtcaattttgactcggtctacgctgacgtggcatcctaagtgaggt 1096630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 7579731 - 7579837
Alignment:
Q  8 ctacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||| |||||||||||| |||||| | |||| ||| |||| || |||||||||| ||| ||| ||||| ||||| ||||| ||||||| |    
T  7579731 ctacaaaaccgcccgctaagttttgcacttgtggcaatttttgcccccaaagctaattttgactcggtctacgctgacatggcaccctaagtgaggtgcc 7579830  T
Q  107 acgtgtt 113  Q
    || ||||    
T  7579831 acatgtt 7579837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 23220633 - 23220739
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||||| ||||||||||  |||||  ||||||||| ||||  |||||||||| | ||| ||| ||||||||||| ||||| ||||||| |    
T  23220633 ctacaaaaccgccccttaagttttgcacatgtggcggttttggcccccaagaccaattttgattcggtctacgctgacgtggcaccctaagtgaggtgcc 23220732  T
Q  107 acgtgtt 113  Q
    || ||||    
T  23220733 acatgtt 23220739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 44672380 - 44672486
Alignment:
Q  9 tacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||||||||| |||||||||||| ||||| |||||||||  ||||   ||||||||| | ||| ||| ||||||||||| ||||| ||| ||| ||    
T  44672380 tacaaaaccgccccctaagttttgcatatgtggcagttttggcgcccaagatcaattttgattcggtctacgctgacgtggcaccctaagtgaagtgcca 44672479  T
Q  108 cgtgtta 114  Q
    |||||||    
T  44672480 cgtgtta 44672486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 6569754 - 6569658
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggt 103  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||||  |||  |||||||||| | ||| ||| |||||||||||  |||| ||||||    
T  6569754 ctacaaaaccgccccttaagttttacatttgtggcagttttggccctcaagaccaattttgattcggtctacgctgacgtggcactctaagtgaggt 6569658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 50226638 - 50226531
Alignment:
Q  8 ctacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||| ||||||||| ||||||||||||  ||| | |||||||||| | || || ||| |||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  50226638 ctactaaaccgccctctaagttttgcacctgtagcagttttggccccgaaggctaatattgactcggtctacgctgacgtggcaccctaagtgaggtgcc 50226539  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  50226538 acgtgtta 50226531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 7579909 - 7579863
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctcc 54  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||    
T  7579909 ctacaaaaccgcccctaaattttgcaattgtagtagttttggcctcc 7579863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 25486296 - 25486387
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||||| |||||  ||||||||| | ||   ||||||||||| ||| ||| ||||||||||| ||||| ||||||| |||||||||    
T  25486296 ctaagttttgcatctgtggc-gttttggcccctaagttcaattttgactcggtctacgctgacgtggcaccctaaatgaggtgccacgtgtta 25486387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 8301592 - 8301497
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgagg 102  Q
    ||||||||||| ||||||| |||||||| ||||| ||||||| || ||||  ||||||||||||   | ||| |||||||| || |||||||||||    
T  8301592 ctacaaaaccgtcccctaaattttgcatctgtggcagttttgacccccaagaccaattttgactcaatctacgctgacgtgacaccctaattgagg 8301497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 20224750 - 20224671
Alignment:
Q  35 ttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||| ||||||||||  ||||| |||||||||||  || ||| ||||||||||| ||||| ||||||  |||||||||    
T  20224750 ttgtggcagttttggccctcaatgacaattttgactctgtctacgctgacgtggcaccctaaatgaggtaccacgtgtta 20224671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 25085640 - 25085533
Alignment:
Q  8 ctacaaaaccgc-ccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||| |||| ||| |||||||| |  ||||| ||||||||||  |||   ||||||||||  ||| ||||||||||||||| ||||| ||||||| |    
T  25085640 ctacaaatccgcaccccaagttttgtacctgtggcagttttggccctcaagatcaattttgacccggtctacactgacgtggcaccctaagtgaggtgcc 25085541  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  25085540 acgtgtta 25085533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 1853699 - 1853595
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||| ||||||||||||||||||||||  | |||||||| ||||  |||| ||||||||||| |||  ||||||| || ||||| || || | ||    
T  1853699 ctacaaaactgcccctaagttttgcatttgtgacaattttggcc-ccaagaccaa-tttgacttggtctacgttgacgtgacaccctaagtggggagcca 1853602  T
Q  108 cgtgtta 114  Q
    |||||||    
T  1853601 cgtgtta 1853595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 5287457 - 5287367
Alignment:
Q  24 aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||| |||||  ||||||||| | || | ||||||||||| |||  || ||||||||||| ||||| ||||||| || ||||||    
T  5287457 aagttttgcatatgtggatgttttggccccgaaggtcaattttgactcggtccacgctgacgtggcaccctaagtgaggtgccaagtgtta 5287367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 7060833 - 7060779
Alignment:
Q  60 caattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||| ||| ||||||||||||||| ||||| ||||||| | |||||||    
T  7060833 caattttgactcggtctacactgacgtggcaccctaagtgaggtgccgcgtgtta 7060779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 23480145 - 23480055
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| | |||||    ||||| |||| ||||||||||||| ||| ||| |||| |||||| || || |||||||||||||||||    
T  23480145 cccctaagttttgcatctatggta----tggcccccaaggccaattttgactcggtctacgctgatgtggca-cccaaatgaggtgtcacgtgtta 23480055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 26311651 - 26311546
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||| ||||| ||||||||||| ||||| |||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||| ||||||| |    
T  26311651 ctacaaaaccaccccttaagttttgcatatgtggcagttttggcccccaaggtcaattttgactcggtctacgctgacgtggcatcctaagtgaggtgcc 26311552  T
Q  107 acgtgt 112  Q
    ||||||    
T  26311551 acgtgt 26311546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 5003314 - 5003219
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||||||| |||||| |||||||||  |||||| ||||||| ||||||| ||| |||||||| || ||||| ||||||||||| |||||    
T  5003314 cccctaagttttgcaattgtggcagttttggctcccaatgtcaattttaacttggtctacgctgacgtgacaccctaagtgaggtgtcacatgtta 5003219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 18031189 - 18031082
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| |||| |||||||| ||||||| |||||||||||  |||   ||||||||||||||| ||| ||||||||||| ||||| |||||||||    
T  18031189 ctacaaaaccgtcccttaagttttgtatttgtgatagttttggccctcaagatcaattttgacttggtctacgctgacgtggcaccctaagtgaggtgtc 18031090  T
Q  107 acgtgtta 114  Q
    || |||||    
T  18031089 acttgtta 18031082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 30349415 - 30349522
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||||| ||||||||||| ||||||||||||| || |||| ||||||| ||||| ||| |||  |||||||||| ||||| ||||||| |    
T  30349415 ctacaaaaccgccccttaagttttgcatctgtggtagttttgacccccaaggccaattatgactcggtctacgttgacgtggcaccctaagtgaggtgcc 30349514  T
Q  107 acgtgtta 114  Q
    || |||||    
T  30349515 acatgtta 30349522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 33399851 - 33399958
Alignment:
Q  8 ctacaaaaccgc-ccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||  ||||||||||| ||||||||| |||||||||| | || | ||||||||||| ||| ||| ||||||||||| ||||| ||| |||||    
T  33399851 ctacaaaaccggaccctaagttttacatttgtggcagttttggcccctaaggtcaattttgactcggtctacgctgacgtggcaccctaagtgatgtgtc 33399950  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  33399951 acgtgtta 33399958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 266357 - 266252
Alignment:
Q  9 tacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||||||||| ||||||||||  ||||| |||||||||| ||||  |||||||||| | ||| ||| |||||||| |||||||| ||||||||||    
T  266357 tacaaaaccgccccttaagttttgcacctgtggcagttttggcc-ccaaaaccaattttgattcggtctacgctgacgtgacatcctaagtgaggtgtca 266259  T
Q  108 cgtgtta 114  Q
    |||||||    
T  266258 cgtgtta 266252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 10727441 - 10727347
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgag 101  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||| |||| ||||||||||||||| | ||| ||||||||| | ||||| ||||    
T  10727441 ctacaaaaccgccccctaagttttgcatctgtggcagttttggcccccaaggccaattttgacttgatctacgctgacgtgggaccctaagtgag 10727347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 6036895 - 6036800
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||| ||||||| || |||| ||||||||||||||||| ||  |||||||| || ||||| ||||||| ||| |||||    
T  6036895 cccctaagttttgcatatgtggcagttttgacccccaaagccaattttgacttggtttatgctgacgtgacaccctaagtgaggtgccacatgtta 6036800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 20474951 - 20474869
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||||  |||||||||||||||| ||||| |||||||||| |||||| |||| |||||| |||||||  ||||||||||    
T  20474951 ctacaaaacgccccctaagttttgcatctgtggcagttttggcccccaatgtcaatgttgactcggtatacgttgacgtggca 20474869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 3812820 - 3812903
Alignment:
Q  20 ccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtg 104  Q
    ||||||||||||||| ||||| |||||||||| ||||  |||||||||||  ||| ||| ||||||||||| ||||| |||||||    
T  3812820 ccctaagttttgcatatgtggcagttttggcc-ccaagaccaattttgacccggtctacgctgacgtggcaccctaagtgaggtg 3812903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 2853662 - 2853599
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||||||||||| |||||||| ||| ||||| |||||||||| |||| |||||||||||||    
T  2853662 ctacaaaaccgccccctaagtttttcatatgtggcagttttggcccccaaggccaattttgact 2853599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 11351719 - 11351805
Alignment:
Q  24 aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgt 110  Q
    ||||||| ||| | ||| |||||| | | |||||||||||||||||| ||| ||| ||||||||||| ||||| ||||||| |||||    
T  11351719 aagttttacatatatggcagttttcgtccccaatgccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgccacgt 11351805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 32143326 - 32143432
Alignment:
Q  9 tacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||||||||| ||||||||||  ||||| |||||||||| ||||  |||||||||||| ||| |||  ||| ||||||  |||| ||||||| ||    
T  32143326 tacaaaaccgccccttaagttttgcacctgtggcagttttggcccccaagaccaattttgactcggtctacgttgatgtggcactctaagtgaggtggca 32143425  T
Q  108 cgtgtta 114  Q
    | |||||    
T  32143426 catgtta 32143432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 6036723 - 6036770
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaatttt 66  Q
    |||||||||||||||| ||||| |||||||||| |||| |||||||||    
T  6036723 cccctaagttttgcatatgtggcagttttggcccccaaggccaatttt 6036770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 8160677 - 8160748
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||| || ||| |||| ||| |||||||||||||||||||| ||||||||| || | | |||||||||||    
T  8160677 cccctatgtattggatttttggcagttttggcctccaatgccacttttgacttagtcttcgctgacgtggca 8160748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 8223943 - 8223893
Alignment:
Q  63 ttttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtt 113  Q
    ||||| || ||| ||| ||||||||||||||||||||||||| ||||||||    
T  8223943 ttttggctcggtctacgctgacgtggcatcctaattgaggtgccacgtgtt 8223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 2841039 - 2840966
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaa 96  Q
    |||||||||||||||||| ||||||||||  |||  |||||||||||| | | |||  |||||||||| |||||    
T  2841039 taagttttgcatttgtggcagttttggcccgcaaaaccaattttgactcgctctacgttgacgtggcaccctaa 2840966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 11108979 - 11108898
Alignment:
Q  9 tacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||| ||||||| || ||| || | ||| |||||||||| ||||||||| ||||||||| || | | |||||||||||    
T  11108979 tacaaaacagcccctatgtattggatctttggcagttttggcccccaatgccacttttgacttagtcttcgctgacgtggca 11108898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 26601539 - 26601631
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtg 111  Q
    |||||||||||||||| ||||  || ||||| | ||||  |||||||||||| ||| ||| |||| || ||| ||| | ||||||||||||||    
T  26601539 cccctaagttttgcatctgtgacagctttggtccccaagaccaattttgactcggtctacgctgatgtagcacccttagtgaggtgtcacgtg 26601631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 30539238 - 30539132
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| |||||||||||||||| ||||| |||||||||| |||||| ||||||||| | ||| ||  ||||||||||| ||||| ||||||| |    
T  30539238 ctacaaaaccgtcccctaagttttgcatctgtggcagttttggcccccaatgtcaattttgattcggtctatgctgacgtggcaccctaagtgaggtgcc 30539139  T
Q  107 acgtgtt 113  Q
    |||||||    
T  30539138 acgtgtt 30539132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 37813338 - 37813249
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaa 96  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||| |||| ||||||||||||| ||| ||| ||||||||||| |||||    
T  37813338 ctacaaaaccgccccctaagttttgcatctgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggcaccctaa 37813249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3676375 - 3676268
Alignment:
Q  8 ctacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    |||||||||||||| ||||||||||||| ||||| |||||||| | ||||  |||||||||||| ||| ||| ||||||||||| ||||| ||||||| |    
T  3676375 ctacaaaaccgcccactaagttttgcatctgtggcagttttggtccccaaaaccaattttgactcggtctacgctgacgtggcaccctaagtgaggtgcc 3676276  T
Q  107 acgtgtta 114  Q
    | ||||||    
T  3676275 atgtgtta 3676268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 21486721 - 21486824
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||  ||||| | |||||||||||||   ||||||||||||||| ||| |||||||| || ||||| |||||||||    
T  21486721 ctacaaaaccgccccctaagttttgcacctgtggcatttttggcctccaagatcaattttgacttggtctacgctgacgtgacaccctaagtgaggtgtc 21486820  T
Q  107 acgt 110  Q
    ||||    
T  21486821 acgt 21486824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 29044778 - 29044687
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||||| ||| ||| ||||||||| | ||||| ||||||| |||| ||||    
T  29044778 taagttttgcatttgtggcagttttggcccccaaggccaattttgactcggtctacgctgacgtggtaccctaaatgaggtgccacgcgtta 29044687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 45177280 - 45177375
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||  ||||||||||  ||| || |||||||||| ||| ||||||||||||||| ||||| ||||||||||| |||||    
T  45177280 cccctaagttttgcatctgtgacagttttggccctcaaggctaattttgactcggtctacactgacgtggcaccctaagtgaggtgtcacatgtta 45177375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 16982857 - 16982751
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||| ||||  ||||||| || |||| |||||||||||||| || ||| ||||||||||| || || ||||||| |    
T  16982857 ctacaaaaccgccccctaagttttgcatctgtgccagttttgccc-ccaaggccaattttgacttagtctacgctgacgtggcaccccaagtgaggtgcc 16982759  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  16982758 acgtgtta 16982751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 44269350 - 44269303
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44269350 taagttttgcatttgtggtagttttggcccccaatgccaattttgact 44269303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 6807404 - 6807311
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgt 112  Q
    |||||||||||||||||||||| ||||||| ||  ||| | |||||||||||  || ||| ||||||||||| ||||| ||||||| |||||||    
T  6807404 cccctaagttttgcatttgtggcagttttgtccctcaaggtcaattttgactctgtctacgctgacgtggcaccctaagtgaggtgccacgtgt 6807311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 27545408 - 27545512
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    |||||||| || ||||||||||||||| | ||| |||||||||| |||| ||||||||| ||| | | ||| ||||||||||| ||||| ||||||| ||    
T  27545408 ctacaaaatcgaccctaagttttgcatctatggcagttttggcc-ccaaagccaattttaactcgatctacgctgacgtggcaccctaagtgaggtgcca 27545506  T
Q  108 cgtgtt 113  Q
    ||||||    
T  27545507 cgtgtt 27545512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 25144024 - 25144116
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||||||||||| ||| ||| ||||||| ||| ||||| ||| ||| ||| |||||    
T  25144024 ctaagttttgcatctgtggcagttttggcatccaaagccaattttgactcggtttacgctgacgttgcaccctaagtgatgtgccacatgtta 25144116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 39890020 - 39889940
Alignment:
Q  8 ctacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtg 87  Q
    ||||||| |||||| ||||||||||||| ||||| | ||||||||||||||| ||||||||||| ||| ||| ||||||||    
T  39890020 ctacaaatccgccctctaagttttgcatctgtggcaattttggcctccaatgtcaattttgactcggtttacgctgacgtg 39889940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 23702370 - 23702275
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||||||||  ||||||||||||||| | |||||||||||  || ||  ||||| ||||| ||||| |||| || |||||||||    
T  23702370 cccctaagttttgcatttgtgacagttttggcctccaaggtcaattttgactcagtctatgctgacatggcaccctaagtgagatgccacgtgtta 23702275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 29657770 - 29657877
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctcc-aatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgt 105  Q
    ||||||||||||||| ||| |||||||| ||||| |||||||||| || || | ||||||||| | ||| |||||||||||| || ||||| |||||||     
T  29657770 ctacaaaaccgccccctaaattttgcatatgtggcagttttggccccccaaagtcaattttgattcggtctacactgacgtgacaccctaagtgaggtgc 29657869  T
Q  106 cacgtgtt 113  Q
    ||||||||    
T  29657870 cacgtgtt 29657877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 521689 - 521608
Alignment:
Q  9 tacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    ||||||||||||| ||||||||||| |||| | | ||||||||||||| ||| ||||||||| ||  ||| |||||||||||    
T  521689 tacaaaaccgcccataagttttgcacttgtagcaattttggcctccaaggccgattttgactcggactacgctgacgtggca 521608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 14880414 - 14880491
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaa 96  Q
    ||||||| |||||||| ||||| |||||||||| |||| ||| ||||||||| ||| ||  |||||||||||||||||    
T  14880414 cccctaaattttgcatctgtggcagttttggcccccaaggccgattttgactcggtctatgctgacgtggcatcctaa 14880491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 26823905 - 26823954
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttga 68  Q
    |||||||||||||||||||||| |||||||| | ||||||||||||||||    
T  26823905 cccctaagttttgcatttgtggcagttttgggccccaatgccaattttga 26823954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 22846526 - 22846616
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtt 113  Q
    |||||||||||| | ||| ||||||||||  ||| | ||||||||| ||||| ||| ||||| ||||| ||||| ||||||| ||||||||    
T  22846526 taagttttgcatctttggcagttttggccctcaagggcaattttgaattggtctacgctgacatggcaccctaagtgaggtgccacgtgtt 22846616  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 29790839 - 29790931
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    ||||||||||||  ||||| |||||||| | || | | ||||||||||||||| ||| ||||||||||| ||||  ||| ||||||| |||||    
T  29790839 ctaagttttgcacatgtggcagttttggtccccgaggtcaattttgacttggtctacgctgacgtggcaccctatgtgaagtgtcacatgtta 29790931  T

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Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 37263584 - 37263544
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttg 48  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  37263584 ctacaaaaccgcccctaagttttgcacttgtgatagttttg 37263544  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 23702193 - 23702252
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttgg-cctccaatgccaatttt 66  Q
    ||||||||||||||||||||||||||  ||| |||||||||| || |||| |||||||||    
T  23702193 ctacaaaaccgcccctaagttttgcaactgtagtagttttggtcccccaaggccaatttt 23702252  T

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Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 37939990 - 37940060
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggca 90  Q
    |||||||||||||||| ||||| |||||||| | ||||  |||||||||||| ||| ||| |||||||||||    
T  37939990 cccctaagttttgcatatgtggcagttttgg-caccaagaccaattttgactcggtctacgctgacgtggca 37940060  T

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Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 38593312 - 38593359
Alignment:
Q  65 ttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgt 112  Q
    ||||||||||  || ||||||||||||||||| |||||||||||||||    
T  38593312 ttgacttggtcaacgctgacgtggcatcctaagtgaggtgtcacgtgt 38593359  T

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Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 20853455 - 20853549
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtt 113  Q
    |||||||||||||||| ||||| |||||||||| ||||   ||||||||| | | | |||  |||||||||| || || ||||||| ||||||||    
T  20853455 cccctaagttttgcatatgtggcagttttggcccccaagatcaattttgaatagatctacgttgacgtggcacccaaaatgaggtgccacgtgtt 20853549  T

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Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 22192545 - 22192439
Alignment:
Q  8 ctacaaaaccgcc-cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| | |||||||||||||  ||| |  ||||||||  |||| | ||||||||||| ||| ||| || | |||||| ||||| |||||||||    
T  22192545 ctacaaaaccgtctcctaagttttgcaactgtagccgttttggctgccaaggtcaattttgactcggtctacgcttatgtggcaccctaagtgaggtgtc 22192446  T
Q  107 acgtgtt 113  Q
    |||||||    
T  22192445 acgtgtt 22192439  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 18929401 - 18929430
Alignment:
Q  40 gtagttttggcctccaatgccaattttgac 69  Q
    ||||||||||||||||||||||||||||||    
T  18929401 gtagttttggcctccaatgccaattttgac 18929430  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 33298422 - 33298511
Alignment:
Q  23 taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgt 112  Q
    ||||||| |||| ||||| |||||||||  ||||  | |||||||| | ||| ||| ||||||||||| ||||| ||||||| |||||||    
T  33298422 taagtttggcatctgtggcagttttggctcccaagtctaattttgattcggtctacgctgacgtggcaccctaagtgaggtgccacgtgt 33298511  T

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Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 41487457 - 41487360
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtg 104  Q
    ||||||||||||||| |||||||||||  ||| |  ||||||||| ||||  |||||||||||| ||| ||| |||||||| ||  |||| |||||||    
T  41487457 ctacaaaaccgccccctaagttttgcaactgtagctgttttggcccccaagaccaattttgactcggtctacgctgacgtgacacgctaagtgaggtg 41487360  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 42363717 - 42363749
Alignment:
Q  80 ctgacgtggcatcctaattgaggtgtcacgtgt 112  Q
    ||||||||||||||||| |||||||||||||||    
T  42363717 ctgacgtggcatcctaagtgaggtgtcacgtgt 42363749  T

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Target: scaffold0328 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 9478 - 9585
Alignment:
Q  8 ctacaaaaccg-cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||| |||||||||||||||| ||||| |||||| ||| |||| ||||||||||||| ||| ||  |||||||| |||| ||| ||||||| |    
T  9478 ctacaaaaccgtcccctaagttttgcatatgtggcagttttagcccccaaggccaattttgactcggtctaggctgacgtgacatcttaaatgaggtgcc 9577  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  9578 acgtgtta 9585  T

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Target: scaffold0248 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 482 - 577
Alignment:
Q  19 cccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||| ||| ||||| |||||||||| ||||  |||||||||||| ||| || |||||||||||| ||||| |||||||||| ||||||    
T  482 cccctaagttttacatatgtggcagttttggcccccaagaccaattttgactcggtctatactgacgtggcaccctaaatgaggtgtcatgtgtta 577  T

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Target: scaffold0417 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 9433 - 9511
Alignment:
Q  36 tgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgtgtta 114  Q
    |||||||||||||||| ||||   ||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||    
T  9433 tgtggtagttttggcccccaagatcaattttgactcggtctacgctgacgtggcatcctaagtgaggtgtcacgtgtta 9511  T

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Target: scaffold0137 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 19995 - 20083
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgt 110  Q
    ||||||||||||| ||||| |||||||||| |||| ||||||||||||| | | ||| || |||||||| ||||| |||||||||||||    
T  19995 ctaagttttgcatctgtggcagttttggcccccaaagccaattttgactcgatctacgctaacgtggcaccctaagtgaggtgtcacgt 20083  T

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Target: scaffold0011 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 145420 - 145527
Alignment:
Q  8 ctacaaaaccgcccct-aagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||| |||||||| || |||||||| ||||| |||||||||| |||| ||||||||||||| ||| ||  ||||| ||| | ||||| ||||||| |    
T  145420 ctacaaagccgccccttaaattttgcatctgtggcagttttggcccccaaggccaattttgactcggtctaggctgacatggaaccctaagtgaggtgcc 145519  T
Q  107 acgtgtta 114  Q
    ||||||||    
T  145520 acgtgtta 145527  T

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Target: scaffold0025 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 19276 - 19170
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||  |||||||||||||||| |||| |||||||||| || ||| ||| ||||| | ||| ||||  ||||||  |    
T  19276 ctacaaaaccgccccctaagttttgcacatgtggtagttttggcccccaaggccaattttggctcggtctacgctgacatagcaccctacgtgaggtacc 19177  T
Q  107 acgtgtt 113  Q
    |||||||    
T  19176 acgtgtt 19170  T

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Target: scaffold0578 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 3157 - 3236
Alignment:
Q  22 ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgag 101  Q
    ||||||||||||||||||| | ||||||||  ||| | ||||||||||| ||| ||| ||||||||||| ||||| ||||    
T  3157 ctaagttttgcatttgtggcaattttggccctcaaggtcaattttgactcggtctacgctgacgtggcaccctaagtgag 3236  T

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Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 25146 - 25041
Alignment:
Q  8 ctacaaaaccgcccc-taagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtc 106  Q
    ||||||||||||||| |||||||||||| || ||||||||||||| ||||  |||||||||||| | | | | |||||||||||  |||| ||||||| |    
T  25146 ctacaaaaccgccccctaagttttgcatatgcggtagttttggcc-ccaaaaccaattttgactcgatcttcgctgacgtggcactctaagtgaggtgcc 25048  T
Q  107 acgtgtt 113  Q
    | |||||    
T  25047 atgtgtt 25041  T

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Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 21724 - 21830
Alignment:
Q  8 ctacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtca 107  Q
    ||||||||||| | ||||||||||| | | ||| ||||||||   ||||  |||||||||||| ||| ||| ||||||||||| || || |||| |||||    
T  21724 ctacaaaaccgtctctaagttttgcctctatggcagttttggttcccaaaaccaattttgactcggtctacgctgacgtggcaccccaagtgagttgtca 21823  T
Q  108 cgtgtta 114  Q
    |||||||    
T  21824 cgtgtta 21830  T

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Target: scaffold0372 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 204 - 292
Alignment:
Q  21 cctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgaggtgtcacgt 110  Q
    ||||| ||||||| |||||| |||||||||| | || || |||||||||| ||| |||||||||||| || ||||| ||||||| |||||    
T  204 cctaaattttgcacttgtggcagttttggccac-aaggcgaattttgactcggtctacactgacgtgacaccctaagtgaggtgccacgt 292  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 46321 - 46228
Alignment:
Q  9 tacaaaaccgccc-ctaagttttgcatttgtggtagttttggcctccaatgccaattttgacttggtatacactgacgtggcatcctaattgag 101  Q
    |||||||| |||| ||||||||||||| ||||  |||||||||| |||| | |||||||||||  || ||| ||||||||||| ||||| ||||    
T  46321 tacaaaactgccctctaagttttgcatctgtgacagttttggcccccaaggtcaattttgactcagtctacgctgacgtggcaccctaagtgag 46228  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 203421 - 203360
Alignment:
Q  9 tacaaaaccgcccctaagttttgcatttgtggtagttttggcctccaatgccaattttgact 70  Q
    ||||||| | |||||||||||||||||||||  |||||||||| |||| | |||||||||||    
T  203421 tacaaaatcacccctaagttttgcatttgtgacagttttggcccccaaagtcaattttgact 203360  T

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Target: scaffold1301 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 1259 - 1227
Alignment:
Q  42 agttttggcctccaatgccaattttgacttggt 74  Q
    |||||||||| ||||||||||||||||||||||    
T  1259 agttttggcccccaatgccaattttgacttggt 1227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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