View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_32 (Length: 330)
Name: NF6339_low_32
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 52 - 313
Target Start/End: Original strand, 11834175 - 11834437
Alignment:
| Q |
52 |
tagaataacatatatcgaagaaaaggtttatattgattg-atttaccttaaatgctctatcatattttctgtactttctcaactctttaacaactctaca |
150 |
Q |
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| T |
11834175 |
tagaataacatataatgaagaaaaggtttataatgattggatttacctgaagagctctgtcatgttttctgtactttctcaactctttaacaactctaca |
11834274 |
T |
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| Q |
151 |
aagtttccatttggtgagatttttgccttcattctctcattgattcaacacagaagcagaactcaattcaggattctccatcatcgatattcttttgtat |
250 |
Q |
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| T |
11834275 |
aagttcccatttggtgagattcctgccttcattctcccattgattcaacacagaagcagaacccaattcaggattctgcatcattgaaattctcttgtat |
11834374 |
T |
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| Q |
251 |
ataacataccatttcatactgggcatttactcataatcaactgtaccatatttgtgtatcttt |
313 |
Q |
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| T |
11834375 |
atagcattccatttcaaattgggttttctctcataatcaagagtaccataattgtgaatcttt |
11834437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 104 - 313
Target Start/End: Complemental strand, 1489230 - 1489021
Alignment:
| Q |
104 |
gctctatcatattttctgtactttctcaactctttaacaactctacaaagtttccatttggtgagatttttgccttcattctctcattgattcaacacag |
203 |
Q |
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| T |
1489230 |
gctctgtcatgtcttctgtactttctcaactctttaacaactctacaaagttcccatttggtgagattcctgccttcattctcccattgattcaacacag |
1489131 |
T |
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| Q |
204 |
aagcagaactcaattcaggattctccatcatcgatattcttttgtatataacataccatttcatactgggcatttactcataatcaactgtaccatattt |
303 |
Q |
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| T |
1489130 |
aagcagaacccaattcaggattctccatcattgaaatcctcttgtatatagcattccatttcaaattgggttttctctcataatcaagtgtaccataatt |
1489031 |
T |
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| Q |
304 |
gtgtatcttt |
313 |
Q |
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| T |
1489030 |
gtgaatcttt |
1489021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 9033904 - 9033808
Alignment:
| Q |
161 |
ttggtgagatttttgccttcattctctcattgattcaacacagaagcagaactcaattcaggattctccatcatcgatattcttttgtatataacat |
257 |
Q |
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| T |
9033904 |
ttggtgagatttttgccttcattctcccattgattcaacacagaagcagaactcaattcaggattctccatcatcgatattcttttgtatataacat |
9033808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 9033997 - 9033929
Alignment:
| Q |
25 |
ttaaatgtatttttactttatagaaagtagaataacatatatcgaagaaaaggtttatattgattgatt |
93 |
Q |
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| T |
9033997 |
ttaaatgtatttttactttatagaaagtagaataacatgtaccgaagaaaaggtttatattgattgatt |
9033929 |
T |
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