View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_low_39 (Length: 293)

Name: NF6339_low_39
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_low_39
NF6339_low_39
[»] chr1 (1 HSPs)
chr1 (1-293)||(26832292-26832582)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 26832292 - 26832582
Alignment:
Q  1 tttatgcacacaaaagaaaccaaccaaaggaagaaaataacactagacttctttggagatcataaaaagaagcatacgtggctaaataagaaagccattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  26832292 tttatgcacacaaaagaaaccaaccaaaggaagaaaataacactagacttctttgaagatcataaaa-gaagcatacgtggctaaataagaaagccattc 26832390  T
Q  101 aagtactaagtgggacttacttcagccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagattgattttattgttttgtagctcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  26832391 aagtactaagtgggacttacttcagccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagtttgattttattgttttgcggctcttt 26832490  T
Q  201 atggcacaagttagcatgacccctaaaagataaacaaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccagc 293  Q
    | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26832491 agggcacaagttagcatga-ccctaaaagataaataaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccagc 26832582  T

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