View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_40 (Length: 272)
Name: NF6339_low_40
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 8381612 - 8381859
Alignment:
| Q |
11 |
caaaggaaaatagagacatgcttgaaccaatttataaatatctagttaaaagaaaataaccttcaatttttctaactggaaagcagcgttcattaacctt |
110 |
Q |
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| T |
8381612 |
caaaggaaaatagagacatgcttgaaccaatttataaatatctagttaaaagaaaataaccttcaatttttctaactggaaagcagcgttcattaacctt |
8381711 |
T |
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| Q |
111 |
ctatgctttctccacttttctccctcgtgaattataagaccactaaatagaaatttgaaaatctcatattttggcttttgtaattcagaagttctgttta |
210 |
Q |
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| T |
8381712 |
ctatgctttctccacttttctccctcgtgaattataagaccactaaatagaaatttgaaaatctcatattttggcttttgtaattcagaagttctgttta |
8381811 |
T |
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| Q |
211 |
agacatcttttattagctctggttctgtgagaatcagccttggtgttg |
258 |
Q |
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| T |
8381812 |
agacatcttttattagctctggttctgtgagaatcagccttggtgttg |
8381859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 242
Target Start/End: Complemental strand, 30393975 - 30393800
Alignment:
| Q |
67 |
taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctcgtgaattataagaccactaaatagaaattt |
166 |
Q |
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| T |
30393975 |
taaccttcaattgttctaaatggaaagcagggttgattagccttctatgcttgctccatttttctcccccataactagcaagaccactagctagtaactt |
30393876 |
T |
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| Q |
167 |
gaaaatctcatattttggcttttgtaattcagaagttctgtttaagacatcttttattagctctggttctgtgaga |
242 |
Q |
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| T |
30393875 |
gaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgaga |
30393800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 30383824 - 30383755
Alignment:
| Q |
67 |
taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctc |
136 |
Q |
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| T |
30383824 |
taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctc |
30383755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 30482225 - 30482135
Alignment:
| Q |
62 |
gaaaataaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctcgtgaattataagacca |
152 |
Q |
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| T |
30482225 |
gaaactaaccttcaatttttctaaatggaatgcaggatttattatctttctatgcttgctccacttttcaccctcatgggttataagacca |
30482135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 23767356 - 23767286
Alignment:
| Q |
63 |
aaaataaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctcc |
133 |
Q |
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| T |
23767356 |
aaaataaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttggtccacttttctcc |
23767286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 30423933 - 30423851
Alignment:
| Q |
70 |
ccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctcgtgaattataagacca |
152 |
Q |
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| T |
30423933 |
ccttcaatttttctaaatggaatgcagggttgataatctttctgtgcttgctccactgttctccctcatgacttataagacca |
30423851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 133
Target Start/End: Original strand, 23784766 - 23784841
Alignment:
| Q |
58 |
aaaagaaaataaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctcc |
133 |
Q |
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| T |
23784766 |
aaaagaagataaccttcaatttttccatgtgaaacgcagggttgattattcttctatgcttgctccacttttctcc |
23784841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 41628723 - 41628832
Alignment:
| Q |
65 |
aataaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctcgtgaattataagaccactaaatagaaat |
164 |
Q |
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| T |
41628723 |
aataaccttcaatttttctgaatggaaagcggggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaac |
41628822 |
T |
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| Q |
165 |
ttgaaaatct |
174 |
Q |
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| T |
41628823 |
ttgaaaatct |
41628832 |
T |
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