View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_low_44 (Length: 251)

Name: NF6339_low_44
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_low_44
NF6339_low_44
[»] chr5 (25 HSPs)
chr5 (9-251)||(9603684-9603923)
chr5 (15-120)||(2740273-2740378)
chr5 (10-118)||(16327902-16328010)
chr5 (15-119)||(33149634-33149738)
chr5 (14-119)||(35943887-35943992)
chr5 (15-119)||(28177775-28177879)
chr5 (15-119)||(35785199-35785303)
chr5 (15-121)||(18520880-18520986)
chr5 (16-121)||(13811650-13811755)
chr5 (51-123)||(15409642-15409714)
chr5 (15-119)||(26720516-26720620)
chr5 (15-119)||(26990265-26990369)
chr5 (15-121)||(36732938-36733044)
chr5 (15-96)||(39557513-39557594)
chr5 (23-119)||(14831814-14831910)
chr5 (15-119)||(40145407-40145511)
chr5 (23-119)||(42414306-42414402)
chr5 (56-114)||(10356639-10356698)
chr5 (54-120)||(2252203-2252269)
chr5 (50-120)||(6679697-6679767)
chr5 (42-119)||(33825347-33825424)
chr5 (54-121)||(3921300-3921367)
chr5 (14-121)||(31008986-31009093)
chr5 (56-122)||(39688934-39689000)
chr5 (30-99)||(10227905-10227974)
[»] chr7 (31 HSPs)
chr7 (15-120)||(36362025-36362130)
chr7 (15-120)||(36361909-36362014)
chr7 (15-120)||(3434561-3434666)
chr7 (15-119)||(19329842-19329946)
chr7 (15-121)||(8080379-8080485)
chr7 (15-116)||(3783998-3784099)
chr7 (15-122)||(7389386-7389493)
chr7 (15-121)||(19436183-19436289)
chr7 (40-122)||(36208170-36208252)
chr7 (15-121)||(38837215-38837321)
chr7 (15-121)||(40957705-40957811)
chr7 (15-119)||(35137533-35137637)
chr7 (45-121)||(45223040-45223116)
chr7 (15-116)||(3694370-3694471)
chr7 (15-119)||(38267040-38267144)
chr7 (14-121)||(35468850-35468957)
chr7 (15-114)||(35522881-35522980)
chr7 (12-119)||(41423682-41423789)
chr7 (14-120)||(22343360-22343466)
chr7 (54-120)||(41915740-41915806)
chr7 (50-119)||(46374833-46374902)
chr7 (15-119)||(4999510-4999614)
chr7 (53-121)||(10343597-10343665)
chr7 (12-88)||(16374817-16374893)
chr7 (71-121)||(11044186-11044236)
chr7 (54-119)||(32564461-32564526)
chr7 (51-119)||(21234401-21234469)
chr7 (54-121)||(38044195-38044262)
chr7 (50-120)||(46033832-46033902)
chr7 (50-119)||(39255954-39256023)
chr7 (58-119)||(40846152-40846213)
[»] chr3 (27 HSPs)
chr3 (15-121)||(49607412-49607518)
chr3 (12-119)||(14623832-14623939)
chr3 (12-118)||(13898048-13898154)
chr3 (16-121)||(27714888-27714993)
chr3 (40-120)||(8956761-8956841)
chr3 (15-119)||(26141528-26141632)
chr3 (15-119)||(53982011-53982115)
chr3 (51-122)||(11095385-11095456)
chr3 (15-114)||(52629305-52629404)
chr3 (15-122)||(54868891-54868998)
chr3 (15-119)||(33644200-33644304)
chr3 (50-122)||(35965805-35965877)
chr3 (50-121)||(11347953-11348024)
chr3 (15-118)||(31456690-31456793)
chr3 (15-120)||(17470404-17470509)
chr3 (12-116)||(25407140-25407245)
chr3 (15-107)||(20764911-20765003)
chr3 (40-120)||(35536625-35536705)
chr3 (15-115)||(48587087-48587187)
chr3 (14-120)||(24699949-24700055)
chr3 (14-119)||(8076393-8076498)
chr3 (50-123)||(41189795-41189868)
chr3 (50-119)||(51419391-51419460)
chr3 (40-107)||(39670023-39670090)
chr3 (51-121)||(36707456-36707526)
chr3 (51-120)||(21746213-21746284)
chr3 (12-119)||(41080709-41080814)
[»] chr8 (27 HSPs)
chr8 (12-121)||(42221513-42221622)
chr8 (15-119)||(1179936-1180040)
chr8 (14-118)||(5957831-5957935)
chr8 (15-119)||(34012292-34012396)
chr8 (14-120)||(37038478-37038584)
chr8 (51-114)||(10621119-10621182)
chr8 (56-129)||(4854900-4854973)
chr8 (15-120)||(44507083-44507188)
chr8 (15-119)||(12831047-12831151)
chr8 (15-119)||(15197333-15197437)
chr8 (15-119)||(40423939-40424043)
chr8 (15-122)||(14547919-14548026)
chr8 (56-121)||(24307627-24307692)
chr8 (51-119)||(504153-504221)
chr8 (51-119)||(15048214-15048281)
chr8 (15-119)||(43414577-43414681)
chr8 (56-122)||(24307830-24307896)
chr8 (50-119)||(20074965-20075034)
chr8 (51-119)||(23122629-23122697)
chr8 (54-121)||(16056436-16056503)
chr8 (54-121)||(16383375-16383442)
chr8 (54-121)||(34307214-34307281)
chr8 (11-119)||(30183867-30183975)
chr8 (37-120)||(32032724-32032806)
chr8 (14-99)||(8841427-8841512)
chr8 (12-65)||(42354581-42354634)
chr8 (12-120)||(17443824-17443932)
[»] chr6 (20 HSPs)
chr6 (12-119)||(31953023-31953130)
chr6 (15-121)||(23128123-23128229)
chr6 (15-120)||(11427615-11427722)
chr6 (15-119)||(17598554-17598658)
chr6 (12-121)||(12732480-12732589)
chr6 (15-115)||(28536484-28536582)
chr6 (15-119)||(32869678-32869782)
chr6 (12-114)||(9379705-9379807)
chr6 (53-118)||(946377-946442)
chr6 (50-120)||(31976247-31976317)
chr6 (54-122)||(15990077-15990145)
chr6 (51-119)||(31109432-31109500)
chr6 (54-121)||(30341395-30341462)
chr6 (51-121)||(31110793-31110861)
chr6 (54-119)||(15508059-15508124)
chr6 (37-121)||(15832575-15832659)
chr6 (51-121)||(6209497-6209567)
chr6 (54-120)||(22422053-22422119)
chr6 (50-103)||(4231564-4231617)
chr6 (51-119)||(29857827-29857895)
[»] chr4 (26 HSPs)
chr4 (14-121)||(50052423-50052530)
chr4 (15-121)||(480443-480549)
chr4 (15-119)||(6034044-6034148)
chr4 (39-119)||(50526191-50526271)
chr4 (52-119)||(40574779-40574846)
chr4 (15-122)||(48183045-48183152)
chr4 (36-122)||(29547976-29548062)
chr4 (15-121)||(42044363-42044469)
chr4 (15-119)||(11511458-11511562)
chr4 (14-121)||(29239884-29239991)
chr4 (12-122)||(29977882-29977992)
chr4 (14-119)||(3481654-3481759)
chr4 (54-119)||(8343198-8343263)
chr4 (15-120)||(29234241-29234346)
chr4 (15-119)||(41236347-41236451)
chr4 (54-122)||(55475188-55475256)
chr4 (51-122)||(23608232-23608303)
chr4 (45-120)||(50813918-50813993)
chr4 (51-121)||(24995139-24995209)
chr4 (53-119)||(31910192-31910258)
chr4 (12-122)||(47104541-47104651)
chr4 (54-120)||(47986207-47986273)
chr4 (51-119)||(54473565-54473633)
chr4 (54-121)||(19670751-19670818)
chr4 (51-114)||(53352598-53352660)
chr4 (54-99)||(17983778-17983823)
[»] chr2 (31 HSPs)
chr2 (15-122)||(9058477-9058584)
chr2 (15-120)||(7465731-7465836)
chr2 (15-119)||(13438343-13438447)
chr2 (15-119)||(17473020-17473124)
chr2 (14-121)||(20700813-20700920)
chr2 (14-121)||(33436095-33436202)
chr2 (15-121)||(30915461-30915567)
chr2 (15-120)||(5574484-5574589)
chr2 (15-116)||(19930816-19930917)
chr2 (15-116)||(28863458-28863559)
chr2 (50-119)||(40613933-40614002)
chr2 (40-120)||(33436210-33436290)
chr2 (15-119)||(40701478-40701582)
chr2 (15-122)||(10249378-10249485)
chr2 (12-118)||(41575138-41575245)
chr2 (51-120)||(2533123-2533191)
chr2 (14-119)||(27864704-27864809)
chr2 (51-122)||(17823781-17823852)
chr2 (50-121)||(42257191-42257262)
chr2 (54-121)||(45097770-45097837)
chr2 (51-120)||(32505680-32505749)
chr2 (51-119)||(28381687-28381755)
chr2 (12-119)||(17819997-17820104)
chr2 (40-131)||(26891525-26891616)
chr2 (51-121)||(38273174-38273244)
chr2 (51-121)||(38882846-38882915)
chr2 (14-119)||(38732354-38732459)
chr2 (51-119)||(4060685-4060753)
chr2 (50-120)||(36168835-36168905)
chr2 (54-99)||(2997522-2997567)
chr2 (54-119)||(43490121-43490186)
[»] chr1 (27 HSPs)
chr1 (15-119)||(27564731-27564835)
chr1 (15-119)||(47452316-47452420)
chr1 (14-120)||(51898678-51898784)
chr1 (15-119)||(3000319-3000423)
chr1 (15-119)||(9474872-9474976)
chr1 (12-119)||(3302526-3302633)
chr1 (51-121)||(2581913-2581983)
chr1 (15-121)||(32813245-32813351)
chr1 (15-121)||(38595152-38595258)
chr1 (50-119)||(37649198-37649267)
chr1 (15-120)||(50630457-50630562)
chr1 (14-119)||(41608488-41608593)
chr1 (15-116)||(44548372-44548473)
chr1 (51-119)||(43132-43200)
chr1 (51-119)||(48716314-48716382)
chr1 (50-121)||(23597122-23597193)
chr1 (51-122)||(49811559-49811630)
chr1 (50-120)||(7740732-7740802)
chr1 (51-121)||(8346420-8346490)
chr1 (51-121)||(38632353-38632423)
chr1 (15-120)||(37926434-37926539)
chr1 (54-119)||(50591035-50591100)
chr1 (14-114)||(44453984-44454084)
chr1 (14-121)||(5958995-5959102)
chr1 (50-112)||(26440741-26440803)
chr1 (53-122)||(26274429-26274498)
chr1 (51-120)||(41758804-41758873)
[»] scaffold0321 (1 HSPs)
scaffold0321 (15-121)||(10105-10211)
[»] scaffold1268 (1 HSPs)
scaffold1268 (14-119)||(924-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (14-119)||(924-1029)
[»] scaffold0018 (1 HSPs)
scaffold0018 (14-99)||(152518-152603)
[»] scaffold0237 (1 HSPs)
scaffold0237 (51-119)||(4029-4097)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 9603923 - 9603684
Alignment:
Q  9 gaaatgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctata 108  Q
    ||||||||||||| |||||||||||||||| |||| |||| || ||||||||||||||||||||||| ||||  ||||||| ||||||||||||| |||     
T  9603923 gaaatgaaagagaaagtgtgattgtatggggtccatatgaccatgtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatg 9603824  T
Q  109 tatcattactcttacttaatataatgctaacacaggtattgtgactttataatttatatttatgggaaatgctaa-atttgccctaagggttagggcatt 207  Q
    ||||||||||    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  9603823 tatcattact----cttaatataatgctaacacagatattgtgactttataatctatatttatgggaaatgctaacatttgccctaagggttagggcatt 9603728  T
Q  208 ggaaaatatgttaatttattttataaaagattaataatgtacct 251  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  9603727 ggaaaatatgttaatttattttacaaaagattaataatgtacct 9603684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 2740378 - 2740273
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| ||||||    
T  2740378 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 2740279  T
Q  115 tactct 120  Q
    ||||||    
T  2740278 tactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 16328010 - 16327902
Alignment:
Q  10 aaatgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatat 109  Q
    |||||||||| | |||||| |||| || | | ||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||| | ||| |    
T  16328010 aaatgaaagaaaaagtgtgcttgtgtgaggtgcacatgaacacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatct 16327911  T
Q  110 atcattact 118  Q
    |||||||||    
T  16327910 atcattact 16327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 33149634 - 33149738
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||| |||  |||||||| |||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||    
T  33149634 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 33149733  T
Q  115 tactc 119  Q
    |||||    
T  33149734 tactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 35943887 - 35943992
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| |||| |||||||||| | |  ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| |||||    
T  35943887 gaaagagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatca 35943986  T
Q  114 ttactc 119  Q
    | ||||    
T  35943987 taactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 28177879 - 28177775
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||  ||| |||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| ||||||    
T  28177879 aaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 28177780  T
Q  115 tactc 119  Q
     ||||    
T  28177779 aactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 35785303 - 35785199
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||||||||  ||||||||| | |  ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| ||||||    
T  35785303 aaagagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 35785204  T
Q  115 tactc 119  Q
    |||||    
T  35785203 tactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 18520880 - 18520986
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  18520880 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T
Q  115 tactctt 121  Q
    || ||||    
T  18520980 tattctt 18520986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 13811755 - 13811650
Alignment:
Q  16 aagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatt 115  Q
    |||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| |||| ||    
T  13811755 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcttt 13811656  T
Q  116 actctt 121  Q
    ||||||    
T  13811655 actctt 13811650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 15409642 - 15409714
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttac 123  Q
    ||||||||||||||||||| |||||||| | |||||||  ||||||||||||||||| |||||| ||||||||    
T  15409642 acgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactcttac 15409714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 26720620 - 26720516
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||  ||  |||||||||||||||| ||||||||| || || |||||| |||||||||||||||||| ||||||    
T  26720620 aaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26720521  T
Q  115 tactc 119  Q
     ||||    
T  26720520 aactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 26990369 - 26990265
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||  ||  |||||||||||||||| ||||||||| || || |||||| |||||||||||||||||| ||||||    
T  26990369 aaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26990270  T
Q  115 tactc 119  Q
     ||||    
T  26990269 aactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 36732938 - 36733044
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  | ||||||||||||||||| |||||||| || |||||| | |||||||| ||||||| ||||||    
T  36732938 aaagagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcat 36733037  T
Q  115 tactctt 121  Q
    |||||||    
T  36733038 tactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 39557513 - 39557594
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccaccta 96  Q
    ||||||| |||||||||||||||| ||||  |||||||||||||||||||||||| | ||| ||  | ||||||||||||||    
T  39557513 aaagagaaagtgtgattgtatggggtccatgtgatcacgtgtcagatttttgtgtggatgttaagaggtgtattaccaccta 39557594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 14831910 - 14831814
Alignment:
Q  23 agtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||| ||||  ||||||||| |||  ||||||||||||||| ||| |||||||| || |||||| |||||||||  ||||||| |||||||||||    
T  14831910 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 40145511 - 40145407
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| | ||| || || |||||| |||||||||| ||||||| ||||||    
T  40145511 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcat 40145412  T
Q  115 tactc 119  Q
    |||||    
T  40145411 tactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 42414306 - 42414402
Alignment:
Q  23 agtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||| ||||  ||| |||||||||  ||||||||||||||||||| |||||||| || |||||| |||||||  | ||||||| |||||||||||    
T  42414306 agtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 10356698 - 10356639
Alignment:
Q  56 tcagatttttgtgtaggtgtcaatgg-atgtattaccacctaaggatgtctatatatcat 114  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcat 10356639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 2252203 - 2252269
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    |||||||||||||||| |||||||| || |||||| |||||||||||||| ||| |||||| |||||    
T  2252203 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 6679767 - 6679697
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    |||||||||||||||||||| ||||||||  | |||||| |||||||| ||||||||| |||||| |||||    
T  6679767 cacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 33825347 - 33825424
Alignment:
Q  42 cacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||| |||||||||||||||| ||| |||||||| |  |||||| ||||||||| ||||||||  ||||||||||    
T  33825347 cacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 3921300 - 3921367
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  3921300 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 3921367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 31009093 - 31008986
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||| ||| |||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||  | | |||||||  ||||||||||||| ||| |||||    
T  31009093 gaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatca 31008994  T
Q  114 ttactctt 121  Q
    | ||||||    
T  31008993 taactctt 31008986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 39688934 - 39689000
Alignment:
Q  56 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    |||||||||||||| |||||||| ||||||||| |||| ||||| ||| ||| |||||| |||||||    
T  39688934 tcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactctta 39689000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 10227905 - 10227974
Alignment:
Q  30 ttgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 99  Q
    |||| ||| |||||||| ||||| |||||||||||||| | |||||||| ||||||||| |||| |||||    
T  10227905 ttgtgtggaatccacataatcacatgtcagatttttgtatcggtgtcaagggatgtattgccacataagg 10227974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 36362130 - 36362025
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| |||| |||| ||||| |||  ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||    
T  36362130 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcat 36362031  T
Q  115 tactct 120  Q
    ||||||    
T  36362030 tactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 36361909 - 36362014
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| |||| |||| ||||| |||  ||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||| ||||||    
T  36361909 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcat 36362008  T
Q  115 tactct 120  Q
    ||||||    
T  36362009 tactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 3434666 - 3434561
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||| |||  ||||||||| ||||||||| |||||||| || |||||| |||||||||||||||||| ||||||    
T  3434666 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 3434567  T
Q  115 tactct 120  Q
    ||||||    
T  3434566 tactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 19329946 - 19329842
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||| ||||||||||||||||||| ||||||||  | |||||| |||||||||||||||||| ||||||    
T  19329946 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcat 19329847  T
Q  115 tactc 119  Q
    |||||    
T  19329846 tactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 8080379 - 8080485
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||| |||||||||||| || |||||| |||||||||| ||||||| ||||||    
T  8080379 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 8080478  T
Q  115 tactctt 121  Q
    |||||||    
T  8080479 tactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 3784099 - 3783998
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||| |||  ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| ||||||    
T  3784099 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T
Q  115 ta 116  Q
    ||    
T  3783999 ta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 7389493 - 7389386
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| |  |||||| |||||||||| ||||||| ||||||    
T  7389493 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcat 7389394  T
Q  115 tactctta 122  Q
    ||||||||    
T  7389393 tactctta 7389386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 19436183 - 19436289
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| || |  ||||||||| |||  ||||||||||||||||||| ||||||||  | ||||||  ||||||||||||||||| ||||||    
T  19436183 aaagagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcat 19436282  T
Q  115 tactctt 121  Q
    |||||||    
T  19436283 tactctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 36208252 - 36208170
Alignment:
Q  40 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    ||||| ||| ||| |||||| ||||||||| |||||||||| |||||||||||||||||| ||||||| |||||| |||||||    
T  36208252 tccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactctta 36208170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 38837321 - 38837215
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  |||||||||||||||||||||||||  | || |||||| |||||||||| ||||||| ||||||    
T  38837321 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcat 38837222  T
Q  115 tactctt 121  Q
    |||||||    
T  38837221 tactctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 40957811 - 40957705
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||| ||||||||| |||  ||||||||||||||||||| ||| |||| |  |||||| |||||||||  ||||||| ||||||    
T  40957811 aaagagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcat 40957712  T
Q  115 tactctt 121  Q
    |||||||    
T  40957711 tactctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 35137637 - 35137533
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  |||||| |||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  35137637 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcat 35137538  T
Q  115 tactc 119  Q
    |||||    
T  35137537 tactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 45223116 - 45223040
Alignment:
Q  45 atgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||| ||||||||||||||||||||| |||  | | ||||||| |||||||||||||| |||||||||||||||||    
T  45223116 atgattacgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactctt 45223040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 3694471 - 3694370
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  |||||||||||||  ||||||||||||||||||| ||||| ||  | ||||||  ||||||||| ||| ||||||||||    
T  3694471 aaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcat 3694372  T
Q  115 ta 116  Q
    ||    
T  3694371 ta 3694370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 38267144 - 38267040
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || ||||||  ||| ||||| ||||||| ||||||    
T  38267144 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcat 38267045  T
Q  115 tactc 119  Q
    |||||    
T  38267044 tactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 35468850 - 35468957
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| ||||   || |||||||| |||| | | |||||||| ||| ||||||||  |||||||| ||| |||||||||||||| |||||    
T  35468850 gaaagagaaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatca 35468949  T
Q  114 ttactctt 121  Q
    ||||||||    
T  35468950 ttactctt 35468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 35522980 - 35522881
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  |||||||| |||  |||||||||||||||||||| ||||| ||  | |||||| |||| ||||||||||||| ||||||    
T  35522980 aaagagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 41423789 - 41423682
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| | | || ||||| |||||| || ||| ||| ||||||||||||||||| |||||||  | |||||||||| |||| ||||||||| |||    
T  41423789 atgaaagagaaaatatgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtat 41423690  T
Q  112 cattactc 119  Q
    ||| ||||    
T  41423689 cataactc 41423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 22343466 - 22343360
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||  ||||  ||| |||| ||| |||| |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||    
T  22343466 gaaagagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatca 22343367  T
Q  114 ttactct 120  Q
    | |||||    
T  22343366 taactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 41915806 - 41915740
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||||||||||||||||||||| || |||||| |||||||||| ||| ||| |||||| |||||    
T  41915806 tgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 46374833 - 46374902
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||||||| ||||| || || ||| || |||||||||||||||||| |||||| ||||    
T  46374833 cacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 4999510 - 4999614
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  |||| |||||||||||||| ||||||||  | |||||| ||| |||||| ||||||| ||||||    
T  4999510 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcat 4999609  T
Q  115 tactc 119  Q
    |||||    
T  4999610 tactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 10343597 - 10343665
Alignment:
Q  53 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||||||||||||||| ||||||||    |||||| |||||||||| ||||||| |||||||||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 16374817 - 16374893
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtatt 88  Q
    ||||||||||  ||||| |||| || ||||||| ||| |||||||||||||||||||| | |||||| |||||||||    
T  16374817 atgaaagagaatgtgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgtgtggatgtcaagggatgtatt 16374893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 11044236 - 11044186
Alignment:
Q  71 ggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  11044236 ggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 32564461 - 32564526
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||| |||||||| || |||||| ||||||||| |||| ||| |||||| ||||    
T  32564461 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 21234469 - 21234401
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||| ||||||||||  ||||||| || ||||||  ||||||||||||||||| |||||| ||||    
T  21234469 acgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 38044262 - 38044195
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||||| | |||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  38044262 tgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 46033832 - 46033902
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    |||||||||||||||| ||| ||||| || || |||||| ||||||||| || ||||| |||||| |||||    
T  46033832 cacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 39255954 - 39256023
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||||| | ||| ||||  | |||||| |||||||||| ||||||| |||||| ||||    
T  39255954 cacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 40846152 - 40846213
Alignment:
Q  58 agatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||| | |||||| || |||||| |||||||||||||| ||| |||||| ||||    
T  40846152 agatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 49607518 - 49607412
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| |||| |||||||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  49607518 aaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 49607419  T
Q  115 tactctt 121  Q
    |||||||    
T  49607418 tactctt 49607412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 14623832 - 14623939
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| |||||| |||| || | ||||||||| ||| |||||||||||| ||| |||||||| || |||||| |||||||||||||||||| |||    
T  14623832 atgaaagagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtat 14623931  T
Q  112 cattactc 119  Q
    ||||||||    
T  14623932 cattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 13898048 - 13898154
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| |||||| |||| || | ||||||||| |||||||||||||||| ||| |||||||| || |||||| |||||||||||||| ||| |||    
T  13898048 atgaaagagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctat 13898147  T
Q  112 cattact 118  Q
    |||||||    
T  13898148 cattact 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 27714888 - 27714993
Alignment:
Q  16 aagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcatt 115  Q
    |||||| |||||| ||||  ||| |||||||||  ||||||||||||||||||| |||||||| || ||||||||||||||| | ||||||| |||||||    
T  27714888 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcatt 27714987  T
Q  116 actctt 121  Q
    ||||||    
T  27714988 actctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 8956841 - 8956761
Alignment:
Q  40 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||||| ||||||||| |||||| ||| |||||||| ||||||||| |||| ||||||||||||| ||||||||||||    
T  8956841 tccacatgaacacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 26141528 - 26141632
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| |||| |||| ||||  ||| |||||||||||||||||||| ||||| || || |||||| |||||||||||||||||| ||||||    
T  26141528 aaagagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26141627  T
Q  115 tactc 119  Q
     ||||    
T  26141628 aactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 53982115 - 53982011
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  53982115 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 53982016  T
Q  115 tactc 119  Q
    |||||    
T  53982015 tactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 11095385 - 11095456
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||||||||||    
T  11095385 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctta 11095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 52629404 - 52629305
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||| ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  52629404 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 54868891 - 54868998
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||||||||  ||| ||||| | |  ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| ||||||    
T  54868891 aaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 54868990  T
Q  115 tactctta 122  Q
    ||||||||    
T  54868991 tactctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 33644304 - 33644200
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| ||||| |||| ||||||| ||||||    
T  33644304 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcat 33644205  T
Q  115 tactc 119  Q
    |||||    
T  33644204 tactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 35965805 - 35965877
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    |||||||||||||||| ||| |||||||| |||||||||| ||| ||||||||| ||| ||||||||||||||    
T  35965805 cacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactctta 35965877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 11347953 - 11348024
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||||||||| | |||||| |||||||||  ||||||||||||||||| |||||| ||||||    
T  11347953 cacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctt 11348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 31456793 - 31456690
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| |||||||||  ||||||||||||||||||| |||||||| || |||||| || |||| || ||||||| ||||||    
T  31456793 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcat 31456694  T
Q  115 tact 118  Q
    ||||    
T  31456693 tact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 17470509 - 17470404
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| |||| |||| ||||| |||  ||||||||||||||||||| ||||| ||  | |||||| |||||||| | ||||||| ||||||    
T  17470509 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcat 17470410  T
Q  115 tactct 120  Q
    ||||||    
T  17470409 tactct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 25407140 - 25407245
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcaga-tttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatata 110  Q
    |||||||||| |||||| |||| ||||||||| |||||||||||||||| |||||||||  ||||||| || | |||| ||||||| || ||| ||| ||    
T  25407140 atgaaagagaaagtgtgtttgtgtgggatccatatgatcacgtgtcagattttttgtgtgtgtgtcaaggggtatattgccacctatggttgtgtatgta 25407239  T
Q  111 tcatta 116  Q
    ||||||    
T  25407240 tcatta 25407245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 20764911 - 20765003
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctat 107  Q
    ||||||| |||||| ||||| ||| ||||  ||  |||||||||||||||||||| ||||| || |  |||||||||||||||||||||||||    
T  20764911 aaagagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctat 20765003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 35536705 - 35536625
Alignment:
Q  40 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||||| ||||||||| |||||| ||| ||||||||  | |||||| |||| ||||||||||||| ||||||||||||    
T  35536705 tccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 48587087 - 48587187
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||  ||||  ||||||||| |||  ||||||||||||||| |||||||||||| || |||||| |||||||||| | ||||| ||||||    
T  48587087 aaagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcat 48587186  T
Q  115 t 115  Q
    |    
T  48587187 t 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 24699949 - 24700055
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| |||||  || ||||| ||  |||||| ||||||||| ||| ||||||||  | |||||| ||| |||||||||||||| |||||    
T  24699949 gaaagagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatca 24700048  T
Q  114 ttactct 120  Q
    |||||||    
T  24700049 ttactct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 8076498 - 8076393
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| ||||  ||| ||||| |||  |||||| |||||||||||| |||||||| || |||| | |||||||||| ||| ||| |||||    
T  8076498 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatca 8076399  T
Q  114 ttactc 119  Q
    ||||||    
T  8076398 ttactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 41189795 - 41189868
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttac 123  Q
    ||||||||| |||||| ||| ||||||||  |||||||| |||||||||||||| ||| |||||| ||||||||    
T  41189795 cacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactcttac 41189868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 51419391 - 51419460
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||||||| ||||| || |||||||||  || |||||||||||||| |||||| ||||    
T  51419391 cacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 39670090 - 39670023
Alignment:
Q  40 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctat 107  Q
    ||||||||||||||||||| |||||| | ||| |||||| |||| |||| |||| |||||||||||||    
T  39670090 tccacatgatcacgtgtcaaatttttatatagatgtcaagggatatattgccacataaggatgtctat 39670023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 36707456 - 36707526
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||||||||||||||||| | |||||| || ||||||  ||||||||| | ||||| |||||||||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactctt 36707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 21746213 - 21746284
Alignment:
Q  51 acgtgtcagatttttgtgtagg--tgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||||||||||||||| ||  |||| | | ||||||| |||||||||||||| ||| ||||||||||||    
T  21746213 acgtgtcagatttttgtgtgggggtgtccaggaatgtattgccacctaaggatgtatatgtatcattactct 21746284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 41080814 - 41080709
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| | |||| |||| |||| ||||||||| ||| | ||||||||||| || |||||||| || ||| || | || ||||||||||||| |||    
T  41080814 atgaaagagaaaatgtgcttgtgtggg-tccacatgaccacatatcagatttttgcgtgggtgtcaaagggtgttttgctac-taaggatgtctatgtat 41080717  T
Q  112 cattactc 119  Q
    ||||||||    
T  41080716 cattactc 41080709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 42221622 - 42221513
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||| |||||| | | |||||||  ||||||||||||| ||| |||    
T  42221622 atgaaagagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtat 42221523  T
Q  112 cattactctt 121  Q
    ||||||||||    
T  42221522 cattactctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 1179936 - 1180040
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  || ||||||||||  ||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||    
T  1179936 aaagagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 1180035  T
Q  115 tactc 119  Q
    |||||    
T  1180036 tactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 5957935 - 5957831
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||||||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| ||||||||| |||||||| |||||    
T  5957935 gaaagagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatca 5957836  T
Q  114 ttact 118  Q
    |||||    
T  5957835 ttact 5957831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 34012292 - 34012396
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||| |||  |||||||| |||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||    
T  34012292 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 34012391  T
Q  115 tactc 119  Q
    |||||    
T  34012392 tactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 37038584 - 37038478
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||| ||| |||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||| |||||    
T  37038584 gaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatca 37038485  T
Q  114 ttactct 120  Q
    |||||||    
T  37038484 ttactct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 10621119 - 10621182
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||    
T  10621119 acgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 4854900 - 4854973
Alignment:
Q  56 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttacttaata 129  Q
    |||||||||| ||||||||| || || |||||| |||||||||||||||||| |||||||||||||||| ||||    
T  4854900 tcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactcttactaaata 4854973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 44507083 - 44507188
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| ||| || ||||| ||| ||||| |||  ||||||||||||||||||| ||||| || |  ||||||||||||||||| ||||||| ||||||    
T  44507083 aaagagaaagtatgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcat 44507182  T
Q  115 tactct 120  Q
    ||||||    
T  44507183 tactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 12831151 - 12831047
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || ||||||  ||||||||| ||||||| ||||||    
T  12831151 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcat 12831052  T
Q  115 tactc 119  Q
    |||||    
T  12831051 tactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 15197437 - 15197333
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||  ||||||| ||||||    
T  15197437 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcat 15197338  T
Q  115 tactc 119  Q
    |||||    
T  15197337 tactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 40423939 - 40424043
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| |||||||||  ||||||||||||||||||| | |||||| || |||||| |||||||||| | ||||| ||||||    
T  40423939 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcat 40424038  T
Q  115 tactc 119  Q
    |||||    
T  40424039 tactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 14548026 - 14547919
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| |||| |    
T  14548026 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctt 14547927  T
Q  115 tactctta 122  Q
    ||||||||    
T  14547926 tactctta 14547919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 24307692 - 24307627
Alignment:
Q  56 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||| |||||||||||||||||| |||||||||| ||| ||| |||||| ||||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctt 24307627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 504153 - 504221
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| |||||||||||    
T  504153 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 15048214 - 15048281
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||| ||||    
T  15048214 acgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 43414577 - 43414681
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||  ||| ||||||| |||||||||||| |||||||| || ||| || ||| |||||||||||||| ||||||    
T  43414577 aaagagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcat 43414676  T
Q  115 tactc 119  Q
     ||||    
T  43414677 aactc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 24307830 - 24307896
Alignment:
Q  56 tcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    |||||||||||||| |||||||| ||||||||| |||||||||| ||| ||| |||||| |||||||    
T  24307830 tcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactctta 24307896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 20074965 - 20075034
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||| |||||| ||| |||||||| |  |||||| |||||||||||||||||| |||||||||||    
T  20074965 cacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 23122629 - 23122697
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| ||||||||  | |||||| |||| ||||| ||||||| |||||||||||    
T  23122629 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 16056436 - 16056503
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||||| |||||||| |||||||||  ||| ||||||||| ||| |||||| ||||||    
T  16056436 tgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactctt 16056503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 16383442 - 16383375
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  16383442 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 16383375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 34307281 - 34307214
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  34307281 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 30183867 - 30183975
Alignment:
Q  11 aatgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatata 110  Q
    ||||||||||| |||||| || ||||   |||| ||||| |||| |||||||||||| |  ||||| | | ||||||| |||| ||||||||| ||| ||    
T  30183867 aatgaaagagaaagtgtgcttatatgaagtccatatgattacgtatcagatttttgtatgagtgtccaggaatgtattgccacgtaaggatgtatatgta 30183966  T
Q  111 tcattactc 119  Q
    |||||||||    
T  30183967 tcattactc 30183975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 32032806 - 32032724
Alignment:
Q  37 ggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||| |||  ||| |||||||||||||||| | |||||| ||||||||| |||||||||| ||| ||| |||||| |||||    
T  32032806 ggatccatatggccacatgtcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatcataactct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 8841427 - 8841512
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 99  Q
    |||||||| |||||| ||||  ||| ||||| |||  |||||| |||||||||||| |||||||| || |||| | ||||||||||    
T  8841427 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagg 8841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 42354581 - 42354634
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagattttt 65  Q
    |||||||||| |||||| || | || ||||||||||| ||||||||||||||||    
T  42354581 atgaaagagaaagtgtgcttatgtgagatccacatgaacacgtgtcagattttt 42354634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 17443932 - 17443824
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| |||||  |||| |||| |||||||||  || ||||||||||||||||  |||| ||    ||||||  ||||||||| ||||||| |||    
T  17443932 atgaaagagaaagtgtctttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtat 17443833  T
Q  112 cattactct 120  Q
    ||| |||||    
T  17443832 cataactct 17443824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 31953023 - 31953130
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| |||||| |||| || | ||||||||| ||| |||||||||||| ||| |||||||| || |||||| |||||||||||||||||| |||    
T  31953023 atgaaagagaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctat 31953122  T
Q  112 cattactc 119  Q
    ||||||||    
T  31953123 cattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 23128123 - 23128229
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| |||| |||||||||| |||  ||||||||||||||||||| |||||||| |||||||||| ||| ||| | ||||||||||||||    
T  23128123 aaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcat 23128222  T
Q  115 tactctt 121  Q
    || ||||    
T  23128223 tattctt 23128229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 11427722 - 11427615
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccaccta--aggatgtctatatatc 112  Q
    ||||||| |||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| ||||||||| |||||||  ||| ||||||| ||||    
T  11427722 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatc 11427623  T
Q  113 attactct 120  Q
    ||||||||    
T  11427622 attactct 11427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 17598658 - 17598554
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||| ||||||    
T  17598658 aaagagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 17598559  T
Q  115 tactc 119  Q
    |||||    
T  17598558 tactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 12732589 - 12732480
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| | |||| || | ||||||||||||   |||||||||||||||||||| ||||||||||  | |||| |||| |||| |||||||| |||    
T  12732589 atgaaagagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtat 12732490  T
Q  112 cattactctt 121  Q
    ||||||||||    
T  12732489 cattactctt 12732480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 28536484 - 28536582
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| |||| |||| ||||||||| |  ||||||||||||||||| |||||||| || |||||| |||||||||||||| ||| ||||||    
T  28536484 aaagagaaagtgtgcttgtgtggggtccacatgacc--gtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcat 28536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 32869782 - 32869678
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||| |    
T  32869782 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctt 32869683  T
Q  115 tactc 119  Q
    |||||    
T  32869682 tactc 32869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 9379705 - 9379807
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| | |||| |||| || ||||||||||  ||||||||| |||||||| | |||||||| |||||||||  || |||||||||||||| |||    
T  9379705 atgaaagagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtat 9379804  T
Q  112 cat 114  Q
    |||    
T  9379805 cat 9379807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 946442 - 946377
Alignment:
Q  53 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattact 118  Q
    |||||||||||||| ||||||||||| || ||||||| ||||||||||||||||| |||| |||||    
T  946442 gtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatcgttact 946377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 31976317 - 31976247
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    |||||||||||||||||||| ||||| || || | |||| |||||||||||||||||| |||||| |||||    
T  31976317 cacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 15990077 - 15990145
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| |||||||    
T  15990077 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctta 15990145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 31109432 - 31109500
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| | |||||| || |||||| |||||||||| |||||||  ||||||||||    
T  31109432 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 30341395 - 30341462
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  30341395 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 30341462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 31110793 - 31110861
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||||||||||||||||   ||||||| || |||||| |||||||||||||||||| |||||| ||||||    
T  31110793 acgtgtcagatttttgtga--gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactctt 31110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 15508059 - 15508124
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||    
T  15508059 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 15832659 - 15832575
Alignment:
Q  37 ggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||| |||  |||||||| |||||||||| ||||||||  ||| ||||  ||||||| | ||||||| |||||||||||||    
T  15832659 ggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactctt 15832575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 6209497 - 6209567
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||| |||||||||||||  |||||||    |||||| |||||||||| ||||||| |||||||||||||    
T  6209497 acgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactctt 6209567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 22422053 - 22422119
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||| |||||| |  |||||||  ||| |||| |||||||||||||||||| ||||||||||||    
T  22422053 tgtcagaattttgtatgagtgtcaagagatctattgccacctaaggatgtctatgtatcattactct 22422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 4231617 - 4231564
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgt 103  Q
    |||||||||||||||||||| |||| ||| || |||||| |||||||| |||||    
T  4231617 cacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgt 4231564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 29857895 - 29857827
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| ||||| ||  | |||||| ||| |||| | ||||||| |||||||||||    
T  29857895 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 50052423 - 50052530
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||    
T  50052423 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatca 50052522  T
Q  114 ttactctt 121  Q
    ||||||||    
T  50052523 ttactctt 50052530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 480443 - 480549
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||| ||| ||||| |||  ||||||||||||||||||| |||||||| || ||||||  ||||||||| ||||||| ||||||    
T  480443 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcat 480542  T
Q  115 tactctt 121  Q
    |||||||    
T  480543 tactctt 480549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 6034148 - 6034044
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||| |||  || |||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  6034148 aaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 6034049  T
Q  115 tactc 119  Q
    |||||    
T  6034048 tactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 50526191 - 50526271
Alignment:
Q  39 atccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||| ||| |||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||| |||||||||||    
T  50526191 atccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 40574846 - 40574779
Alignment:
Q  52 cgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| ||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 48183045 - 48183152
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||| ||||| ||||||| ||||||    
T  48183045 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcat 48183144  T
Q  115 tactctta 122  Q
    ||||||||    
T  48183145 tactctta 48183152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 29547976 - 29548062
Alignment:
Q  36 gggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    |||||||| |||  ||| |||||||||||||||| |||||||| ||||||||| |||||||||||||| ||| |||||| |||||||    
T  29547976 gggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctta 29548062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 42044363 - 42044469
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||  | ||||||||| |||||||||| ||||||| ||||||    
T  42044363 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcat 42044462  T
Q  115 tactctt 121  Q
    |||||||    
T  42044463 tactctt 42044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 11511458 - 11511562
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||| ||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  11511458 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 11511557  T
Q  115 tactc 119  Q
    |||||    
T  11511558 tactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 29239991 - 29239884
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| |||| |||| ||||| |||  |||||| |||||||||||| | ||||||  | |||||| |||||||||| ||||||| |||||    
T  29239991 gaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatca 29239892  T
Q  114 ttactctt 121  Q
    ||||||||    
T  29239891 ttactctt 29239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 29977992 - 29977882
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| |||||| |||| |||| |||| ||||  ||||||||||||||||||| ||||| || || |||||| ||||||| || | | ||| |||    
T  29977992 atgaaagagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtat 29977893  T
Q  112 cattactctta 122  Q
    |||||||||||    
T  29977892 cattactctta 29977882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 3481759 - 3481654
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| |||| |||| ||||| |||  | ||||||||||||||||| |||||||| |  |||||| |||||||| | ||||||| |||||    
T  3481759 gaaagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatca 3481660  T
Q  114 ttactc 119  Q
    ||||||    
T  3481659 ttactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 8343198 - 8343263
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||| ||| |||||| ||||    
T  8343198 tgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 29234241 - 29234346
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  |||||||||||||||||| |||| |||| || |||||| ||| |||||| ||||||| ||||||    
T  29234241 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcat 29234340  T
Q  115 tactct 120  Q
    ||||||    
T  29234341 tactct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 41236451 - 41236347
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| | ||||||  | |||||| |||||||||| ||||||| ||||||    
T  41236451 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 41236352  T
Q  115 tactc 119  Q
    |||||    
T  41236351 tactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 55475256 - 55475188
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    |||||||||||||||| |||||||| || |||||| |||||||||||||| ||| |||||| |||||||    
T  55475256 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactctta 55475188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 23608303 - 23608232
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    ||||||||||||||||||| ||||||||  | ||||||  || |||||| ||||||||||||||||||||||    
T  23608303 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactctta 23608232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 50813918 - 50813993
Alignment:
Q  45 atgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    |||| ||| |||||||||||||||| |||||||| || ||||||||||||||||  ||| ||| |||||| |||||    
T  50813918 atgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 24995139 - 24995209
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||| |||||| ||| |||||||| || |||||| ||| |||||| |||| ||||||||||||||||    
T  24995139 acgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactctt 24995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 31910258 - 31910192
Alignment:
Q  53 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||| |||||||| |  ||||||  ||||||||||||||||| |||||| ||||    
T  31910258 gtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 47104651 - 47104541
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| |||||| |||| |||| || | |  | ||||||||| |||||||||| |||||||  |  ||||||  || ||||| ||||||||||||    
T  47104651 atgaaagagaaagtgtgtttgtgtggggtcaataaaaccacgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatat 47104552  T
Q  112 cattactctta 122  Q
    |||||||||||    
T  47104551 cattactctta 47104541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 47986273 - 47986207
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    |||||||||||||||| | |||||| ||||||||| |||||||||| ||| ||| |||||| |||||    
T  47986273 tgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 54473565 - 54473633
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||| |||||||||||| ||||||||  | ||||||  ||||||||| ||||||| |||||||||||    
T  54473565 acgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 19670751 - 19670818
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||||||||||||||  ||||||| || |||||| |||||||||| ||| ||| |||||| ||||||    
T  19670751 tgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 19670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 53352598 - 53352660
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||||||||||||||||||||| || | |||||||  ||||||||| ||||||| ||||||    
T  53352598 acgtgtcagatttttgtgtaggtgttaaagaatgtatt-gcacctaagggtgtctatgtatcat 53352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 17983778 - 17983823
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 99  Q
    |||||||||||||||| |||||||| || |||||| ||||||||||    
T  17983778 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 17983823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 9058584 - 9058477
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| |||||||||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  9058584 aaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 9058485  T
Q  115 tactctta 122  Q
    ||||||||    
T  9058484 tactctta 9058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 7465731 - 7465836
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| |||| |||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| ||| |||||| ||||||| ||||||    
T  7465731 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcat 7465830  T
Q  115 tactct 120  Q
    ||||||    
T  7465831 tactct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 13438447 - 13438343
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||||  ||||||||| ||||||| ||||||    
T  13438447 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcat 13438348  T
Q  115 tactc 119  Q
    |||||    
T  13438347 tactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 17473124 - 17473020
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| ||| |||||| ||||||| ||||||    
T  17473124 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcat 17473025  T
Q  115 tactc 119  Q
    |||||    
T  17473024 tactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 20700920 - 20700813
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| || |  ||| ||||| |||  |||||||||||||||||||||| ||||| || |||||| |||| ||||||||||||| |||||    
T  20700920 gaaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatca 20700821  T
Q  114 ttactctt 121  Q
    ||||||||    
T  20700820 ttactctt 20700813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 33436095 - 33436202
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| ||||  ||| ||||| |||  |||||| |||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||    
T  33436095 gaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatca 33436194  T
Q  114 ttactctt 121  Q
    ||||||||    
T  33436195 ttactctt 33436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 30915567 - 30915461
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||| ||| ||||| |||  ||||||||||||||| ||| || ||||| || |||||| |||||||||| ||||||| ||||||    
T  30915567 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcat 30915468  T
Q  115 tactctt 121  Q
    |||||||    
T  30915467 tactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 5574484 - 5574589
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||| |||  ||||||||||||||| ||| |||||||| || |||||| |||||||||  ||||||| ||||||    
T  5574484 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcat 5574583  T
Q  115 tactct 120  Q
    ||||||    
T  5574584 tactct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 19930816 - 19930917
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| |||||||||  ||||||||||||||||||| | |||||| || |||||| |||||||||| ||||||| ||||||    
T  19930816 aaagagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T
Q  115 ta 116  Q
    ||    
T  19930916 ta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 28863559 - 28863458
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  28863559 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T
Q  115 ta 116  Q
    ||    
T  28863459 ta 28863458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 40613933 - 40614002
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||||||| |||||||| || |||||| |||||||||||||||||| |||||| ||||    
T  40613933 cacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 33436290 - 33436210
Alignment:
Q  40 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    |||||||| ||||||||||||||||| ||| ||||||||  | |||||| ||| |||||||||||||| ||||||||||||    
T  33436290 tccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 40701582 - 40701478
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||||||||  ||| ||||| | |  ||||||||||||||||||| ||||||||  | |||||| |||||||||| ||||||| ||||||    
T  40701582 aaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcat 40701483  T
Q  115 tactc 119  Q
    |||||    
T  40701482 tactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 10249378 - 10249485
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||||||||  | ||||||  ||||||||| ||||||| ||||||    
T  10249378 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcat 10249477  T
Q  115 tactctta 122  Q
    ||||||||    
T  10249478 tactctta 10249485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 41575245 - 41575138
Alignment:
Q  12 atgaaagagacagtgtgattgtat-gggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatata 110  Q
    |||||||||| |||||| |||| | ||| ||||||||| ||| ||||| ||||||||||   |||||| || |||||||||| |||||||||||||| ||    
T  41575245 atgaaagagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgta 41575146  T
Q  111 tcattact 118  Q
    ||||||||    
T  41575145 tcattact 41575138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 2533191 - 2533123
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||| |||||| |||||    
T  2533191 acgtgtcagatttttgtgt-ggtgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 27864809 - 27864704
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| || |  ||| ||||| |||| ||||||||||||||||||| | |||||| || |||||| |||| ||||| ||||||| |||||    
T  27864809 gaaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatca 27864710  T
Q  114 ttactc 119  Q
    ||||||    
T  27864709 ttactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 17823852 - 17823781
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    ||||||||||||||||||| |||||  | | ||||||| |||||||||||||| ||| ||||||||||||||    
T  17823852 acgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactctta 17823781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 42257262 - 42257191
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||||| ||| ||||||||  |||||||| |||||||| ||||||||| |||||| ||||||    
T  42257262 cacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactctt 42257191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 45097770 - 45097837
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||| | |||||||| ||||||||| |||||||||||||| ||| |||||| ||||||    
T  45097770 tgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctt 45097837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 32505680 - 32505749
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||||||||||||||| ||||||||  | ||||||  ||||||||| ||||||| ||||||||||||    
T  32505680 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 28381687 - 28381755
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| |||||| |  | |||||| |||||||||| ||||||| |||||||||||    
T  28381687 acgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 17819997 - 17820104
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||||||| | |||| |||| |||| ||||| | | ||| |||||||||||||||| |||||||| || |||||| |||||||  | ||||||| |||    
T  17819997 atgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtat 17820096  T
Q  112 cattactc 119  Q
    ||| ||||    
T  17820097 cataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 26891525 - 26891616
Alignment:
Q  40 tccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactcttacttaatata 131  Q
    ||||| ||| ||| |||||||||||||||| |||||| | || |||||| |||||||||| || |||| |||||| |||||| ||| |||||    
T  26891525 tccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactctttctttatata 26891616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 38273174 - 38273244
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||||||||||||||||| ||||| || || |||||| ||| ||||| |||||||| |||||| ||||||    
T  38273174 acgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactctt 38273244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 38882846 - 38882915
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||||||||||||||||| | |||||| || | |||| |||||||||| ||||||| |||||||||||||    
T  38882846 acgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 38732459 - 38732354
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||  ||||  ||| |||| |||| ||| |||||||||||||||| |||||||| |||||||||  ||| ||||| ||| ||| |||||    
T  38732459 gaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatca 38732360  T
Q  114 ttactc 119  Q
    | ||||    
T  38732359 taactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 4060753 - 4060685
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| | ||||||  | ||||||  ||||||||| ||||||| |||||||||||    
T  4060753 acgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 36168905 - 36168835
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||||| |||||||||| || || || |||||||||  || |||||||||||||| |||||| |||||    
T  36168905 cacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactct 36168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 2997522 - 2997567
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 99  Q
    |||||||||||||||| |||||||| || |||||| ||||||||||    
T  2997522 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 2997567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 43490186 - 43490121
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||| |||||||| || ||||||  ||||||||| ||| ||| |||||| ||||    
T  43490186 tgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 27564731 - 27564835
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||| ||||||||||||||||||| ||||||||  | |||||| |||||||||||||||||| ||||||    
T  27564731 aaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcat 27564830  T
Q  115 tactc 119  Q
    |||||    
T  27564831 tactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 47452316 - 47452420
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||||||||| |||  |||||| |||||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||    
T  47452316 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcat 47452415  T
Q  115 tactc 119  Q
    |||||    
T  47452416 tactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 51898678 - 51898784
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||| ||| |||||| ||||  ||||||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||| ||||||||| |||||    
T  51898678 gaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatca 51898777  T
Q  114 ttactct 120  Q
    |||||||    
T  51898778 ttactct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 3000423 - 3000319
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||| ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| ||||||    
T  3000423 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcat 3000324  T
Q  115 tactc 119  Q
    |||||    
T  3000323 tactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 9474872 - 9474976
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| ||||||    
T  9474872 aaagagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 9474971  T
Q  115 tactc 119  Q
    |||||    
T  9474972 tactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 3302526 - 3302633
Alignment:
Q  12 atgaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatat 111  Q
    |||||| ||| |||||| ||||||||| |||| ||||| ||||||||||||||||||| |||||| | | || ||||  ||||||||||||| ||| |||    
T  3302526 atgaaaaagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtat 3302625  T
Q  112 cattactc 119  Q
    ||||||||    
T  3302626 cattactc 3302633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 2581983 - 2581913
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||||||||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||||||    
T  2581983 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 2581913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 32813351 - 32813245
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||  ||| |||||||||||||||||||| ||||| || || |||||| |||||||||||||||||| ||||||    
T  32813351 aaagagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 32813252  T
Q  115 tactctt 121  Q
     ||||||    
T  32813251 aactctt 32813245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 38595258 - 38595152
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||| ||| ||||| |||  ||||||||||||||||||| |||||||| || |||||| |||||||| | ||| ||| ||||||    
T  38595258 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcat 38595159  T
Q  115 tactctt 121  Q
    |||||||    
T  38595158 tactctt 38595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 37649267 - 37649198
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||||||| |||||||| |  |||||| |||||||| ||||||||| |||||||||||    
T  37649267 cacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 50630562 - 50630457
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| |||  ||| ||||||||| |||||||||| | ||||| ||||||    
T  50630562 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcat 50630463  T
Q  115 tactct 120  Q
    ||||||    
T  50630462 tactct 50630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 41608488 - 41608593
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||  ||||| ||| |||| |||  ||| ||||||||||||||||  ||||||| || |||||| |||||||||||||| ||| |||||    
T  41608488 gaaagagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatca 41608587  T
Q  114 ttactc 119  Q
    | ||||    
T  41608588 taactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 44548372 - 44548473
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||  ||| ||||| |||  ||||||||||||||||||| ||| ||||  | |||||| |||||||| ||||||||| ||||||    
T  44548372 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcat 44548471  T
Q  115 ta 116  Q
    ||    
T  44548472 ta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 43200 - 43132
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| |||||||| |||||||||  | ||||||  ||||||| |||||||||||    
T  43200 acgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 48716314 - 48716382
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| | ||||||  | |||||| |||||||||| ||||||| |||||||||||    
T  48716314 acgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 23597122 - 23597193
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    |||||||||||||||| ||| ||| |||| |  |||||| |||||||| ||||||||| |||||||||||||    
T  23597122 cacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactctt 23597193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 49811559 - 49811630
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    ||||||||||||||||||| | ||||||  | ||||||  ||||||||||||||||| |||||| |||||||    
T  49811559 acgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactctta 49811630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 7740802 - 7740732
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||||| |||||| ||||||||||||||||||||||  ||| ||||| |||| || |||||| |||||    
T  7740802 cacgtgtcatatttttatgtaggtgtcaatggatgtattgtcacataaggttgtcaatgtatcataactct 7740732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 8346420 - 8346490
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||||||||||||||||| ||||||||  | |||||| |||||||| | || |||| |||||||||||||    
T  8346420 acgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactctt 8346490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 38632353 - 38632423
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctt 121  Q
    ||||||||||||||||||| | ||| ||  | |||||| |||||||||| ||||||| |||||||||||||    
T  38632353 acgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 37926434 - 37926539
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||  ||||| ||||||||  ||  |||||||||||||||| ||| ||||| ||  |||||||| |||||||| ||| ||||| ||||||    
T  37926434 aaagagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcat 37926533  T
Q  115 tactct 120  Q
     |||||    
T  37926534 aactct 37926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 50591035 - 50591100
Alignment:
Q  54 tgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||| ||| |||||| ||||    
T  50591035 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 44454084 - 44453984
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||| | |||||| |||| |||||||||| | | ||| |||||||||||||||| ||| ||||  |||||||| |||| ||| | ||||||| |||||    
T  44454084 gaaagaaaaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatca 44453985  T
Q  114 t 114  Q
    |    
T  44453984 t 44453984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 5958995 - 5959102
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||  ||||  ||| |||| |||| ||| |||||||||||||||| ||||||||  | |||||| |||| ||||| ||| ||| |||||    
T  5958995 gaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatca 5959094  T
Q  114 ttactctt 121  Q
    | ||||||    
T  5959095 taactctt 5959102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 26440803 - 26440741
Alignment:
Q  50 cacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatc 112  Q
    |||||||||||||||||||| ||||| || || ||||||  || |||||||||||||| ||||    
T  26440803 cacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatc 26440741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 26274498 - 26274429
Alignment:
Q  53 gtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactctta 122  Q
    ||||||||||||| ||| | ||||||  |||||||| |||| ||||| ||||||| |||||||| |||||    
T  26274498 gtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcattattctta 26274429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 41758873 - 41758804
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactct 120  Q
    ||||||||||||||||||| | |||||| || |||||| |||  ||| | ||||||| ||||||||||||    
T  41758873 acgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactct 41758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 10105 - 10211
Alignment:
Q  15 aaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcat 114  Q
    ||||||| |||||| ||||| | | ||||| |||  ||||||||||||||| ||| | |||||| ||||||||| |||||||| | ||||||| ||||||    
T  10105 aaagagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcat 10204  T
Q  115 tactctt 121  Q
     ||||||    
T  10205 aactctt 10211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 924 - 1029
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| ||||  ||||| ||| |||  ||||||||| ||||||||| | ||| || || |||||| |||||||| ||||||||| |||||    
T  924 gaaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatca 1023  T
Q  114 ttactc 119  Q
    ||||||    
T  1024 ttactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 924 - 1029
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatca 113  Q
    |||||||| |||||| ||||  ||||| ||| |||  ||||||||| ||||||||| | ||| || || |||||| |||||||| ||||||||| |||||    
T  924 gaaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatca 1023  T
Q  114 ttactc 119  Q
    ||||||    
T  1024 ttactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 152603 - 152518
Alignment:
Q  14 gaaagagacagtgtgattgtatgggatccacatgatcacgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaagg 99  Q
    |||||||| |||||  ||||  |||||||| |||| ||| |||||||||||||||| |||||||| || |||||| ||||| ||||    
T  152603 gaaagagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagg 152518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 4097 - 4029
Alignment:
Q  51 acgtgtcagatttttgtgtaggtgtcaatggatgtattaccacctaaggatgtctatatatcattactc 119  Q
    ||||||||||||||||||| ||||| ||  | |||||| ||| |||| | ||||||| |||||||||||    
T  4097 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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