View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_45 (Length: 249)
Name: NF6339_low_45
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 40918261 - 40918490
Alignment:
| Q |
1 |
ttgacaagaacataacaataacaatagataggaaaaggaacgaacccgtataagttttgtgcaatggaaaagggtaatcgtcgaaaaagtagtgtagagt |
100 |
Q |
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| T |
40918261 |
ttgacaagaacataacaataacaatagataggaaaaggaacgaacccgtataagttttgtgcaatggaaaagggtaatcgtcgaaaaaggagtgtagagt |
40918360 |
T |
|
| Q |
101 |
aatgttggttgaattaagagcctctttgtcgacgacatcaccataagcgcgaatacgaattgtacccgtaatcccgttagctctaacggctgccgtaatt |
200 |
Q |
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| T |
40918361 |
aatgttggttgaattaagagcctctttgtcgacgacatcaccataagcgcgaatacgaattgtacccataatcccgttagctctaacggctgccgtaatt |
40918460 |
T |
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| Q |
201 |
gaaggtgctaccttggaaaagctaaaccca |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40918461 |
gaaggtgctaccttggaaaagctaaaccca |
40918490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 53729817 - 53729728
Alignment:
| Q |
141 |
ccataagcgcgaatacgaattgtacccgtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaaccca |
230 |
Q |
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| T |
53729817 |
ccataaacgcggatactaattctgcccataattccgttagctctaagggctgccgtaattgaaggttctaccttcgaatagctaacccca |
53729728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 41783110 - 41783151
Alignment:
| Q |
92 |
gtgtagagtaatgttggttgaattaagagcctctttgtcgac |
133 |
Q |
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| T |
41783110 |
gtgtagagaaaagttggttgaattaagagcctctttgtcgac |
41783151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 49542284 - 49542317
Alignment:
| Q |
197 |
aattgaaggtgctaccttggaaaagctaaaccca |
230 |
Q |
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| T |
49542284 |
aattgaaggtgctaccttggaaaagctaaaccca |
49542317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 41783181 - 41783248
Alignment:
| Q |
163 |
tacccgtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaaccca |
230 |
Q |
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| T |
41783181 |
tacccataatcccgttcgctctaagggcaaccgtagttgaaggtgctaccttcgaatagctaatccca |
41783248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 49542230 - 49542269
Alignment:
| Q |
94 |
gtagagtaatgttggttgaattaagagcctctttgtcgac |
133 |
Q |
| |
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| T |
49542230 |
gtagagtaatgttgtttgaaataagagcctctttgtcgac |
49542269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 2883259 - 2883067
Alignment:
| Q |
34 |
aaaggaacgaacccgtataagttttgtgcaatgg-aaaagggtaatcgtcgaaaaagtagtgtagagtaatgttggttgaattaagagcctctttgtcga |
132 |
Q |
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| T |
2883259 |
aaaggaacgaacccttatatcttttgtg-aatgccaaaagggtaatcgtcggaaaaggagtgtagagtaatgttggttgaattaaaagcctctttgtcga |
2883161 |
T |
|
| Q |
133 |
cgacatcaccataagcgcgaatacgaattgtacccgtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaaccc |
229 |
Q |
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| T |
2883160 |
c---atcaccataagcgtgaatatgaattgtacccataattccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaaccc |
2883067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 68 - 230
Target Start/End: Original strand, 3151336 - 3151495
Alignment:
| Q |
68 |
aaaagggtaatcgtcgaaaaagtagtgtagagtaatgttggttgaattaagagcctctttgtcgacgacatcaccataagcgcgaatacgaattgtaccc |
167 |
Q |
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|||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| |||| |
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| T |
3151336 |
aaaagggtaatcatcggaaaaggagtgtagagtaatgttggttgaattaaaagcctctttgtcgac---atcaccataagcgtgaatatgaattgcaccc |
3151432 |
T |
|
| Q |
168 |
gtaatcccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaaccca |
230 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3151433 |
ataattccgttagctctaacggctgccgtaattgaaggtgctaccttggaaaagctaaaccca |
3151495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 223
Target Start/End: Complemental strand, 29250784 - 29250641
Alignment:
| Q |
92 |
gtgtagagtaatgttggttgaattaagagcctctttgtcgac------------gacatcaccataagcgcgaatacgaattgtacccgtaatcccgtta |
179 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||||| | ||| |||||||| |||||| |||| ||||| ||||||||||| |
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| T |
29250784 |
gtgtagagaaatgtttgttgaattaagagcctctttgtcgacctcagaagaattaaaatcgccataagcacgaatatgaatattacccataatcccgtta |
29250685 |
T |
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| Q |
180 |
gctctaacggctgccgtaattgaaggtgctaccttggaaaagct |
223 |
Q |
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||||||| ||| ||||||||||||||||||||||| ||| |||| |
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| T |
29250684 |
gctctaagggcagccgtaattgaaggtgctaccttcgaatagct |
29250641 |
T |
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