View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_5 (Length: 632)
Name: NF6339_low_5
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 17 - 625
Target Start/End: Original strand, 38180103 - 38180711
Alignment:
| Q |
17 |
actttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggt |
116 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180103 |
actttagggttggtttcttcatatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggt |
38180202 |
T |
|
| Q |
117 |
cacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaata |
216 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38180203 |
cacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaata |
38180302 |
T |
|
| Q |
217 |
atagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccg |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180303 |
atagtagatatcaaaaactgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccg |
38180402 |
T |
|
| Q |
317 |
taggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtga |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180403 |
taggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtga |
38180502 |
T |
|
| Q |
417 |
caaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38180503 |
caaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagt |
38180602 |
T |
|
| Q |
517 |
gtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtat |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180603 |
gtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtat |
38180702 |
T |
|
| Q |
617 |
gtgatgatg |
625 |
Q |
| |
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||||||||| |
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| T |
38180703 |
gtgatgatg |
38180711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 21 - 625
Target Start/End: Original strand, 38184776 - 38185380
Alignment:
| Q |
21 |
tagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacg |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38184776 |
tagggttggtttcttcatctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacg |
38184875 |
T |
|
| Q |
121 |
actttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatag |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38184876 |
gctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaataatag |
38184975 |
T |
|
| Q |
221 |
tagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtagg |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184976 |
tagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtagg |
38185075 |
T |
|
| Q |
321 |
ctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||| || ||||| || || |
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| T |
38185076 |
ctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcagtggcacttaagctcggacctgtaggcgatgaa |
38185175 |
T |
|
| Q |
421 |
gtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgt |
520 |
Q |
| |
|
|||||||||||||||||| ||| || ||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||| |||||| ||||||| |
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| T |
38185176 |
gtcttcgttgctttcgaaatttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgt |
38185275 |
T |
|
| Q |
521 |
aagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtga |
620 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38185276 |
aagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtga |
38185375 |
T |
|
| Q |
621 |
tgatg |
625 |
Q |
| |
|
||||| |
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|
| T |
38185376 |
tgatg |
38185380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 47 - 625
Target Start/End: Original strand, 38170319 - 38170897
Alignment:
| Q |
47 |
tgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctg |
146 |
Q |
| |
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|||||||| ||||||| |||| || ||| | ||||||| ||||||||| |||||||||||||||||||| || |||| |||||||||||||||||| | |
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| T |
38170319 |
tgaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccg |
38170418 |
T |
|
| Q |
147 |
gtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttg |
246 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||| |||||||| ||||| |
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|
| T |
38170419 |
gtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacaccgttgctgcttg |
38170518 |
T |
|
| Q |
247 |
aatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcc |
346 |
Q |
| |
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|||||| || || | ||||||||||||||||||| |||||||||| | |||| | || |||| | |||| |||||||||||||||| || ||| |
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| T |
38170519 |
aatccacaacagtgttgatgggaggtgaagctcatgtgccaccttgggagcccatgaaagtatgagagtgtagattaagcaagtgaatggatgattttct |
38170618 |
T |
|
| Q |
347 |
tgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggc |
446 |
Q |
| |
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|||||| |||||| |||||||||||||||||||| |||| ||| ||| ||| |||| || ||||| ||| | |||||||| || | ||||| | | |
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| T |
38170619 |
tgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatgtcttcgtcgccaaaggatttttgac |
38170718 |
T |
|
| Q |
447 |
catcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgac |
546 |
Q |
| |
|
| ||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||||| |
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|
| T |
38170719 |
cgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtataagtggatagtggtagcaaaagtgac |
38170818 |
T |
|
| Q |
547 |
ttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
625 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
38170819 |
ttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatg |
38170897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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