View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_51 (Length: 245)
Name: NF6339_low_51
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6353105 - 6353332
Alignment:
| Q |
1 |
attgtggttagtggtgataaaatgtttgaggaaatggatttgatagtttctaatggattagtgtttgtgattgtggtgagtggttttgaaatgttcgacg |
100 |
Q |
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| T |
6353105 |
attgtggttagtggtgataaaatgttagaggaaatggatttgatagtttctaatggattagtgtttgtgattgtggtgagtggttttgaaatgtttgagg |
6353204 |
T |
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| Q |
101 |
aaatggtgttgttagtctctaaaggattagtgtttgatatgattttggaagtgtttgaggaaatgatttgagaaacatcttgcaacaaagattcttgtga |
200 |
Q |
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| T |
6353205 |
aaatggtgttgttagtctctaaaggattagtgtttgatatgattttggaagtgtttgaggaaatgatttgagaaacatcttgcaacaaagagtcttgtga |
6353304 |
T |
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| Q |
201 |
ggatgcaatattggttatgactggaatg |
228 |
Q |
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| T |
6353305 |
ggatgcaatattggttatgactggaatg |
6353332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 6353036 - 6353171
Alignment:
| Q |
1 |
attgtggttagtggtgataaaatgtttgaggaaatggatttgatagtttctaatggattagtgtttgtgattgtggtgagtggttttgaaatgttcgacg |
100 |
Q |
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|||||| | ||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||| | ||||||| || | |
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| T |
6353036 |
attgtgctgagtggtgatgaaatgtttgaggaaatagatttgatggtttctaatggagtagtgtttgtgattgtggttagtggtgataaaatgttagagg |
6353135 |
T |
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| Q |
101 |
aaatggtgttgttagtctctaaaggattagtgtttg |
136 |
Q |
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| T |
6353136 |
aaatggatttgatagtttctaatggattagtgtttg |
6353171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 6352898 - 6353032
Alignment:
| Q |
1 |
attgtggttagtggtgataaaatgtttgaggaaatggatttgatagtttctaatggattagtgtttgtgattgtggtgagtggttttgaaatgttcgacg |
100 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||| |||||| | || | |
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| T |
6352898 |
attgtggtgagtggtgatgaaatgtttgaggaaatggatttgatagtttctaacggattagcatttttgattgtgatgagtggtgatgaaatatgtgagg |
6352997 |
T |
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| Q |
101 |
aaatggtgttgttagtctctaaaggattagtgttt |
135 |
Q |
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| T |
6352998 |
aaatggtgttgaatgtttctaaaggagtagtgttt |
6353032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 6352891 - 6352958
Alignment:
| Q |
63 |
gtttgtgattgtggtgagtggttttgaaatgttcgacgaaatggtgttgttagtctctaaaggattag |
130 |
Q |
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| T |
6352891 |
gtttgtgattgtggtgagtggtgatgaaatgtttgaggaaatggatttgatagtttctaacggattag |
6352958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 6352967 - 6353070
Alignment:
| Q |
1 |
attgtggttagtggtgataaaatgtttgaggaaatggatttgatagtttctaatggattagtgtttgtgattgtggtgagtggttttgaaatgttcgacg |
100 |
Q |
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|||||| | ||||||||| |||| | ||||||||||| |||| |||||||| ||| |||||||| | |||||| |||||||| ||||||||| || | |
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| T |
6352967 |
attgtgatgagtggtgatgaaatatgtgaggaaatggtgttgaatgtttctaaaggagtagtgtttataattgtgctgagtggtgatgaaatgtttgagg |
6353066 |
T |
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| Q |
101 |
aaat |
104 |
Q |
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|||| |
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| T |
6353067 |
aaat |
6353070 |
T |
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