View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_55 (Length: 240)
Name: NF6339_low_55
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1238609 - 1238836
Alignment:
| Q |
1 |
acacttctctttataccaagtaaaaggtgaatgggctcttccaacattcaacttttatnnnnnnnn-ttagagtagtaataattctctaagaaaccttta |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1238609 |
acacttctctttataccaagtaaaaggtgaatgggctcttccaacattcaacttttataaaaaaaaattagagtagtaataattctctaagaaaccttta |
1238708 |
T |
|
| Q |
100 |
gtttactaaacttcatacaaatttcagacaaagtataatatttacacacaaaaagggactctgccagccattgaca---tataatgatacacattccttg |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
1238709 |
gtttactaaacttcatacaaatttcagacaaagtataatatttacacacaaaaagggactctgtcagccattgacatactataatgatacacattccttg |
1238808 |
T |
|
| Q |
197 |
gttcatatccaagaattttgtttccttc |
224 |
Q |
| |
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|||||||| ||||||||||||||||||| |
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|
| T |
1238809 |
gttcatatgcaagaattttgtttccttc |
1238836 |
T |
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