View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_low_57 (Length: 238)

Name: NF6339_low_57
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_low_57
NF6339_low_57
[»] chr1 (3 HSPs)
chr1 (1-111)||(40973781-40973891)
chr1 (152-222)||(40973670-40973740)
chr1 (186-222)||(40955658-40955694)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 40973891 - 40973781
Alignment:
Q  1 tgtatttgctatagttagatctttaaatgctcattttattataaaagaactggaataccaaagtgatagcttaatattggaaaagagaagaaggctaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40973891 tgtatttgctatagttagatctttaaatgctcattttattataaaagaactggaataccaaagtgatagcttaatattggaaaagagaagaagtctaatt 40973792  T
Q  101 cttgaacaagt 111  Q
    |||||||||||    
T  40973791 cttgaacaagt 40973781  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 40973740 - 40973670
Alignment:
Q  152 ccttcctgcttctatgtaatagaatgctttaaaatttaaataaagctcaaaaaacttgttttagtgcttct 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40973740 ccttcctgcttctatgtaatagaatgctttaaaatttaaataaagctcaaaaaacttgttttagtgcttct 40973670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 40955694 - 40955658
Alignment:
Q  186 tttaaataaagctcaaaaaacttgttttagtgcttct 222  Q
    |||||||||||||||||||| ||||||||||||||||    
T  40955694 tttaaataaagctcaaaaaagttgttttagtgcttct 40955658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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