View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_6 (Length: 598)
Name: NF6339_low_6
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 15 - 581
Target Start/End: Original strand, 42861454 - 42862021
Alignment:
| Q |
15 |
tataacttgattaaagcttataactctttcctccttcnnnnnnnnnnnnnnnncagaaagcttataactatttcccttctttactaggaactgacaattc |
114 |
Q |
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| T |
42861454 |
tataacttgattaaagcttataactctttcctccttcaaaaaaaaaaaaaaaacagaaagcttataactatttcccttctttactaggaactgacaattc |
42861553 |
T |
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| Q |
115 |
attgtgtcnnnnnnnngcaggtgttacaattatctactgaaactcccaaggattctgatatggacactgttagtgggagcatttattcgactgatcaact |
214 |
Q |
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| T |
42861554 |
attgtgtcttttttttgcaggtgttacaattatctactgaaactcccaaggattctgatatggacactgttagtgggagcatttattcgactgatcaact |
42861653 |
T |
|
| Q |
215 |
agaagagtttgtgtcaaaactcgctgcccacagtcacttgaattctttggtatctacctgctcctctagtgccctgtctcaaaactcgaatgcccaaaaa |
314 |
Q |
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| T |
42861654 |
agaagagtttgtgtcaaaactcgctgcccacagtcacttgaattcgttggtatctacctgctcctctagtgccctgtctcaaaactcgaatgcccaaaaa |
42861753 |
T |
|
| Q |
315 |
atttcagaaattatgcaaaaactgaaacctttggtgagcaaggatcttgactcaatcatgtccatcactggagttgtcgaagaaatatcttcgttggtga |
414 |
Q |
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| T |
42861754 |
atttcagaaattatgcaaaaactgaaacctttggtgagcaaggatcttgactcaatcatgtccaccactggagttgtcgaagaaatatcttcgttggtga |
42861853 |
T |
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| Q |
415 |
aagatttaaatgaaatcaaagatcacctcagttttgctgattttgggacgttttctgcagttcagatggctattggtcg-tttgagaacatcaaacttgc |
513 |
Q |
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| T |
42861854 |
aagatttaaatgaaatcaaagatcacctcagttttgccgattttgggacgttttctgcagttcagatggctattggtcgttttgagaacatcaaacttgc |
42861953 |
T |
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| Q |
514 |
tctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtgggtgtattcaagaattgatac |
581 |
Q |
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| T |
42861954 |
tctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtgggtgtattcaagaattgatac |
42862021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 276 - 581
Target Start/End: Original strand, 27574488 - 27574806
Alignment:
| Q |
276 |
tcctctagtgccctgtctcaaaactcgaatgcccaaaaaatttcagaaattatgcaaaaactgaaacctttggtgagcaaggatcttgactcaatcatgt |
375 |
Q |
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| T |
27574488 |
tcctctagtgctctttctcaaaacccgaatgtccaaaatatttcagaagttatgcaaaaattgaaagtcttggtgggcaaggatcttgactcaatcatgt |
27574587 |
T |
|
| Q |
376 |
ccatcactggagttgtcgaagaaatatcttcgttggtgaaagatttaaatgaaatcaaagatcacctcagttttgctgattttgggacgttttctgcagt |
475 |
Q |
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| T |
27574588 |
ccaccactggtgttgttggggagatatcttcattgttgaaaaatttagatgaaatcaaagaccatctcagccctgttgattttggaaccttttctgtagt |
27574687 |
T |
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| Q |
476 |
tcagatggctattggtcg-tttga------------gaacatcaaacttgctctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtggg |
562 |
Q |
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| T |
27574688 |
tcagatggttgttggtcgttttgaaagtgacttcccaaacatcaaacttgccctatccacctatcatgatgtgcatcaagaacaacaaggagttcttggg |
27574787 |
T |
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| Q |
563 |
tgtattcaagaattgatac |
581 |
Q |
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| T |
27574788 |
tgtcttcaagagttgatac |
27574806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 42857176 - 42857217
Alignment:
| Q |
77 |
tataactatttcccttctttactaggaactgacaattcattg |
118 |
Q |
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| T |
42857176 |
tataactatttcccttctttactaggaattgtcaattcattg |
42857217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 42855597 - 42855641
Alignment:
| Q |
74 |
gcttataactatttcccttctttactaggaactgacaattcattg |
118 |
Q |
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| T |
42855597 |
gcttataactctttcccttctttactaggaattgtcaattcattg |
42855641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 42848954 - 42848998
Alignment:
| Q |
74 |
gcttataactatttcccttctttactaggaactgacaattcattg |
118 |
Q |
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|||||||| | |||||||||||||||||||| || |||||||||| |
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| T |
42848954 |
gcttataattctttcccttctttactaggaattgtcaattcattg |
42848998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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