View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_64 (Length: 226)
Name: NF6339_low_64
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 4189000 - 4188807
Alignment:
| Q |
14 |
catcatttgttgtgtactggatttttggttgttgagattctgatggccaaacaatttttccagctaaagggagaaagtgttggagggttaaagagagtga |
113 |
Q |
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| T |
4189000 |
catcatttgttgtgtactggatttttggttgttgagattctgatggccaaacaattttaccagctaaagggagaaagtgttggagggttaaagagagtga |
4188901 |
T |
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| Q |
114 |
tgatttgagaattggaactagtttttgaaagaagaaagaagggtgtgactgtgaatttgggagggtgtaaaagaagattcgttctataggatgg |
207 |
Q |
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| T |
4188900 |
tgatctgagaattggaactagtttttgaaagaagaaagaagggtgtgattgtgaatttgggagggtgtaaaagaagattcgttctataggatgg |
4188807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 4195864 - 4195715
Alignment:
| Q |
39 |
tggttgttgagattctgatggccaaacaatttttccagctaaagggagaaagtgttggagggttaaagagagtgatgatttgagaattggaactagtttt |
138 |
Q |
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| T |
4195864 |
tggttgtggagaatcagaaggccaaacgattttaccagctaaaggaagaaagtgttggagggttaaagagaatgaagatttgagaattggaacaagtttt |
4195765 |
T |
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| Q |
139 |
tgaaagaagaaagaagggtgtgactgtgaatttgggagggtgtaaaagaa |
188 |
Q |
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| T |
4195764 |
tggaaaaagaaagaagtgtgtgaatgtgaatttgggagggtgtagaagaa |
4195715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 4250622 - 4250481
Alignment:
| Q |
58 |
ggccaaacaatttttccagctaaagggagaaagtgttggagggttaaagagagtgatgatttgagaattggaactagtttttgaaagaagaaagaagggt |
157 |
Q |
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| T |
4250622 |
ggccaaacgatgttaccagctaaagggagaaaatgttggagggttaaagagagtgatgatttgagatttggaacaatcgtttgaaagaagaaagaagggt |
4250523 |
T |
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| Q |
158 |
gtgactgtgaatttgggagggtgtaaaagaagattcgttcta |
199 |
Q |
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| T |
4250522 |
gtgattgtgaatttgggagggtgtagaagaaaactcgttcta |
4250481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 4192145 - 4191966
Alignment:
| Q |
9 |
gacatcatcatttgttgtgtactggatttttggttgttgagattctgatggccaaacaatttttccagctaaagggagaaagtgttggagggttaaagag |
108 |
Q |
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| T |
4192145 |
gacaccatcatttggtgtatataggattattggttgttgagactcggaaggccaaattatcttaccagctaaagggagaaagtgtttgagggttaaagag |
4192046 |
T |
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| Q |
109 |
agtgatgatttgagaattggaactagtttttgaaagaagaaagaagggtgtgactgtgaatttgggagggtgtaaaagaa |
188 |
Q |
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| T |
4192045 |
ggtgaagatttgagaattgtaacaagcttttggaagaagaaagaagggtgtgattgtgaacttgggagggtgtagaagaa |
4191966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 4233638 - 4233464
Alignment:
| Q |
14 |
catcatttgttgtgtactggatttttggttgttgagattctgatggccaaacaatttttccagctaaagggagaaagtgttggagggttaaagagagtga |
113 |
Q |
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| T |
4233638 |
catcatttggagtatattggattattggttcttgagattctaaaggccaaacgatgttaccagctaaagggagaaagtccttgagggttaaagagagtga |
4233539 |
T |
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| Q |
114 |
tgatttgagaattggaactagtttttgaaagaagaaagaagggtgtgactgtgaatttgggagggtgtaaaagaa |
188 |
Q |
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| T |
4233538 |
agatttgagaattggaacaagcttcttgaagaagaaagaagggtgtgaatgtgaatttgggagggcgtagaagaa |
4233464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 4102545 - 4102412
Alignment:
| Q |
58 |
ggccaaacaatttttccagctaaagggagaaagtgttggagggttaaagagagtgatgatttgagaattggaactagtttttgaaagaagaaagaagggt |
157 |
Q |
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|||||||| || || |||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||| || |||| ||| ||| ||||||||| |
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| T |
4102545 |
ggccaaacgatgttaccagctaaagggaggaagttttggagggttaaagagagtgaatatttgagttttggaacaaggttttcaaaaaagtaagaagggt |
4102446 |
T |
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| Q |
158 |
gtgactgtgaatttgggagggtgtaaaagaagat |
191 |
Q |
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| T |
4102445 |
gtgattgtgaatttgggagggtgtagaagtagat |
4102412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 4122022 - 4121883
Alignment:
| Q |
58 |
ggccaaacaatttttccagctaaagggagaaagtgttggagggttaaagagagtgatgatttgagaattggaactagtttttgaaagaagaaagaagggt |
157 |
Q |
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|||||||| || || ||||||||||| | || | ||||||||||||||||||||| |||||||| ||||||| || |||| || ||||||||||||| |
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| T |
4122022 |
ggccaaacgatgttaccagctaaaggtgggaatttttggagggttaaagagagtgaagatttgagttttggaacaaggttttcaacaaagaaagaagggt |
4121923 |
T |
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| Q |
158 |
gtgactgtgaatttgggagggtgtaaaagaagattcgttc |
197 |
Q |
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|||| |||||||||||||||||||| |||||||| ||||| |
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| T |
4121922 |
gtgattgtgaatttgggagggtgtagaagaagatacgttc |
4121883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 4094997 - 4094856
Alignment:
| Q |
58 |
ggccaaacaatttttccagctaaagggagaaagtgttggagggttaaagagagtgatgatttgagaattggaactagtttttgaaagaagaaagaagggt |
157 |
Q |
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|||||||| || || |||||||||||||| |||||||| || |||||||||||||| |||||||| ||||||| || |||| ||||| |||| ||||| |
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| T |
4094997 |
ggccaaacgatgttaccagctaaagggaggaagtgttgtagagttaaagagagtgaagatttgagttttggaacaagattttcgaagaaaaaagtagggt |
4094898 |
T |
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| Q |
158 |
gtgactgtgaatttgggagggtgtaaaagaagattcgttcta |
199 |
Q |
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|||| |||||| ||||||||||||| ||||| || ||||||| |
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| T |
4094897 |
gtgagtgtgaacttgggagggtgtagaagaaaatacgttcta |
4094856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 4241426 - 4241249
Alignment:
| Q |
14 |
catcatttgttgtgtactggatttttggttgttgagattctgatggccaaacaatttttccagctaaagggagaaagtgttggagggttaaagagagtga |
113 |
Q |
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||||||||| |||||| || |||||||| | ||| ||||| | |||||| || || || |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
4241426 |
catcatttggtgtgtattgtatttttgggttttgtgattcaaaatcccaaacgatgttaccggctaaaggaagaaagtgttggagggtcaaagaaagtga |
4241327 |
T |
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| Q |
114 |
tgatttgagaattggaactagtttttgaaagaagaaagaagggtgtgactgtgaatttgggagggtgtaaaagaagat |
191 |
Q |
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||||| ||| ||||||| | | ||||||||||||| |||| || ||| |||||||||||||||||||| || ||||| |
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| T |
4241326 |
agatttaagatttggaacaattgtttgaaagaagaatgaagtgtctgattgtgaatttgggagggtgtagaataagat |
4241249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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