View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_66 (Length: 218)
Name: NF6339_low_66
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 3592917 - 3592731
Alignment:
| Q |
15 |
cataggaataggtaggtaaacacagtggattacattaatattaattagaccctcttgcttgaatctgaagctgaaactaaaataagtcagctccaaatac |
114 |
Q |
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| T |
3592917 |
cataggaataagtaggtaaacacagtggattacattaatattaattagaccctcttgcttgaatctgaagctgaaactaaaataagtcagctccaaatac |
3592818 |
T |
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| Q |
115 |
tcatacaccactgcataatatgttccatatgagaacaagaacacttactaatctgtatcaaaaacacaacaccccaagtaaataact |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592817 |
tcatacaccactgcataatatgttccatatgagaacaagaacacttactaatctgtatcaaaaacacaacaccccaagtaaataact |
3592731 |
T |
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