View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6339_low_68 (Length: 216)

Name: NF6339_low_68
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6339_low_68
NF6339_low_68
[»] chr2 (8 HSPs)
chr2 (1-201)||(23853913-23854113)
chr2 (143-199)||(17495996-17496052)
chr2 (143-197)||(31275294-31275349)
chr2 (143-180)||(41256219-41256256)
chr2 (143-187)||(24048552-24048596)
chr2 (148-199)||(19541788-19541839)
chr2 (149-189)||(4112297-4112337)
chr2 (148-184)||(31000616-31000652)
[»] scaffold0171 (2 HSPs)
scaffold0171 (143-184)||(7369-7410)
scaffold0171 (143-187)||(22577-22621)
[»] chr7 (25 HSPs)
chr7 (143-184)||(7152131-7152172)
chr7 (143-199)||(2352144-2352200)
chr7 (143-199)||(19138786-19138842)
chr7 (143-199)||(20738185-20738241)
chr7 (143-181)||(7143589-7143627)
chr7 (143-184)||(3401086-3401127)
chr7 (146-199)||(11466915-11466968)
chr7 (143-184)||(21544691-21544732)
chr7 (146-194)||(10925074-10925122)
chr7 (143-181)||(3094189-3094227)
chr7 (143-184)||(4091357-4091398)
chr7 (143-184)||(7494503-7494544)
chr7 (143-184)||(18494566-18494607)
chr7 (143-179)||(7325835-7325871)
chr7 (148-183)||(9404615-9404650)
chr7 (149-184)||(14074495-14074530)
chr7 (149-184)||(14384523-14384558)
chr7 (164-199)||(17971182-17971217)
chr7 (145-184)||(18497209-18497248)
chr7 (142-184)||(9974263-9974305)
chr7 (143-189)||(12357718-12357764)
chr7 (143-184)||(9121037-9121078)
chr7 (143-184)||(9687091-9687132)
chr7 (148-184)||(7776367-7776403)
chr7 (148-184)||(21473037-21473073)
[»] chr6 (14 HSPs)
chr6 (143-199)||(17320777-17320833)
chr6 (143-187)||(22727247-22727291)
chr6 (143-184)||(13194289-13194330)
chr6 (143-184)||(13782417-13782458)
chr6 (143-184)||(13789739-13789780)
chr6 (143-184)||(13803994-13804035)
chr6 (142-184)||(8037056-8037098)
chr6 (143-184)||(6177912-6177953)
chr6 (148-197)||(11076968-11077017)
chr6 (144-184)||(9395432-9395472)
chr6 (148-184)||(15387173-15387209)
chr6 (149-184)||(15320095-15320130)
chr6 (143-182)||(15576203-15576242)
chr6 (143-189)||(9942437-9942483)
[»] chr4 (15 HSPs)
chr4 (143-199)||(25367723-25367779)
chr4 (142-199)||(7023033-7023091)
chr4 (143-184)||(20717951-20717992)
chr4 (143-197)||(17331493-17331547)
chr4 (143-184)||(10450309-10450350)
chr4 (143-184)||(22219957-22219998)
chr4 (149-182)||(24580023-24580056)
chr4 (143-184)||(30797712-30797753)
chr4 (152-184)||(12805788-12805820)
chr4 (143-199)||(24912141-24912197)
chr4 (143-199)||(32022947-32023003)
chr4 (144-194)||(39133640-39133691)
chr4 (131-189)||(7144409-7144467)
chr4 (143-184)||(13553468-13553509)
chr4 (143-184)||(51885895-51885936)
[»] chr1 (9 HSPs)
chr1 (143-199)||(23420486-23420542)
chr1 (144-187)||(30676676-30676719)
chr1 (143-184)||(27682941-27682982)
chr1 (143-184)||(34522132-34522173)
chr1 (129-192)||(27550147-27550209)
chr1 (143-201)||(13153609-13153667)
chr1 (143-184)||(17836800-17836841)
chr1 (143-184)||(25664823-25664864)
chr1 (144-188)||(14581341-14581385)
[»] chr8 (11 HSPs)
chr8 (143-184)||(12957568-12957609)
chr8 (143-192)||(28075670-28075719)
chr8 (146-194)||(18790061-18790109)
chr8 (143-197)||(13528954-13529008)
chr8 (143-197)||(13618493-13618547)
chr8 (143-184)||(13803108-13803149)
chr8 (143-184)||(32240458-32240499)
chr8 (152-184)||(26853620-26853652)
chr8 (143-182)||(28900142-28900181)
chr8 (149-196)||(32478445-32478492)
chr8 (143-184)||(27117427-27117468)
[»] scaffold0362 (1 HSPs)
scaffold0362 (143-187)||(9968-10012)
[»] chr3 (6 HSPs)
chr3 (143-187)||(33913408-33913452)
chr3 (143-184)||(25918097-25918138)
chr3 (144-195)||(8839666-8839717)
chr3 (143-177)||(14419353-14419387)
chr3 (147-184)||(5631512-5631549)
chr3 (149-189)||(22991546-22991586)
[»] chr5 (10 HSPs)
chr5 (145-184)||(16617460-16617499)
chr5 (143-199)||(17029260-17029317)
chr5 (148-184)||(19571060-19571096)
chr5 (145-184)||(16621482-16621521)
chr5 (143-184)||(11273695-11273736)
chr5 (143-184)||(20715847-20715888)
chr5 (143-184)||(25682159-25682200)
chr5 (143-180)||(26327884-26327921)
chr5 (148-200)||(19443290-19443342)
chr5 (148-184)||(24518962-24518998)
[»] scaffold0386 (2 HSPs)
scaffold0386 (146-184)||(7545-7583)
scaffold0386 (143-183)||(10564-10604)
[»] scaffold0855 (1 HSPs)
scaffold0855 (143-187)||(2026-2070)
[»] scaffold0847 (1 HSPs)
scaffold0847 (143-187)||(2191-2235)
[»] scaffold0006 (1 HSPs)
scaffold0006 (143-177)||(78573-78607)
[»] scaffold0999 (1 HSPs)
scaffold0999 (143-200)||(2875-2932)
[»] scaffold0103 (1 HSPs)
scaffold0103 (143-184)||(36503-36544)
[»] scaffold0804 (1 HSPs)
scaffold0804 (144-188)||(1058-1102)
[»] scaffold0108 (1 HSPs)
scaffold0108 (148-184)||(9911-9947)
[»] scaffold0107 (1 HSPs)
scaffold0107 (148-199)||(32853-32905)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 23853913 - 23854113
Alignment:
Q  1 aagtctttcttctcttaatcttcnnnnnnngccacatcaaatttaagagtgttcttaagactatagtcnnnnnnnncggtataatgttcctttgaaatta 100  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  23853913 aagtctttcttctcttaatcttctttttttgccacatcaaatttaagagtgttcttaagactatagtcttttttttcggtataatgttcctttgaaatta 23854012  T
Q  101 agaatgctcatatgagcatgatatatgtacgaaagggcaactattgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccacag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23854013 agaatgctcatatgagcatgatatatgtacgaaagggcaactattgacaagtgcaccaaatcataacaagtaataaagtagtaaattattgtctccacag 23854112  T
Q  201 g 201  Q
    |    
T  23854113 g 23854113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 17495996 - 17496052
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||| |||| ||||    
T  17495996 attgacaagtgcaccaaatcggaacaagtaatatagtagtaagttatagtcttcaca 17496052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 31275349 - 31275294
Alignment:
Q  143 attgacaagtgcaccaaatcgtaa-caagtaataaagtagtaaattattgtctcca 197  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  31275349 attggcaagtgcaccaaatcgtaaacaagtaataaagtagtaagttatcgtctcca 31275294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 41256219 - 41256256
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagta 180  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  41256219 attgacaagtgcaccaaatcgtaacaaataataaagta 41256256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 24048596 - 24048552
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatt 187  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||    
T  24048596 attgacaaatgcaccaaatcgtaacaaataatacagtagtaaatt 24048552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 19541839 - 19541788
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    ||||||||||||| | || ||| ||||||||||||||||||| |||||||||    
T  19541839 caagtgcaccaaaccatatcaaataataaagtagtaaattatcgtctccaca 19541788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 4112337 - 4112297
Alignment:
Q  149 aagtgcaccaaatcgtaacaagtaataaagtagtaaattat 189  Q
    |||||||||||| |||| |||||||||||||||||| ||||    
T  4112337 aagtgcaccaaaccgtagcaagtaataaagtagtaagttat 4112297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 31000652 - 31000616
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  31000652 caagtgcatcaaattgtaacaagtaataaagtagtaa 31000616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 7410 - 7369
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7410 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 7369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 22621 - 22577
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatt 187  Q
    |||| |||||||| || || |||||||||||||||||||||||||    
T  22621 attggcaagtgcatcatattgtaacaagtaataaagtagtaaatt 22577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 7152172 - 7152131
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7152172 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 7152131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 2352144 - 2352200
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||    
T  2352144 attgacaagtgcatcaaatcgtaacaagtaataaagtagtaagttatcatctccaca 2352200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 19138786 - 19138842
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    |||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||    
T  19138786 attgacaaatgcacctaattgaaacaagtaataaagtagtaaattattgtctccaca 19138842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 20738185 - 20738241
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    |||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||    
T  20738185 attgacaaatgcacctaattgaaacaagtaataaagtagtaaattattgtctccaca 20738241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 7143627 - 7143589
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtag 181  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7143627 attgacaagtgcaccaaatcgtaacaagtaataaagtag 7143589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 3401127 - 3401086
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  3401127 attgacaagtgcacaaaatcgtaacaagtaataaagtagtaa 3401086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 11466915 - 11466968
Alignment:
Q  146 gacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    |||||||||| |||||||||| ||||||||||||||||  ||||||||||||||    
T  11466915 gacaagtgcatcaaatcgtaagaagtaataaagtagtaggttattgtctccaca 11466968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 21544691 - 21544732
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  21544691 attggcaagtgcaccaaatcgtaacaagtaataaagtagtaa 21544732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 10925122 - 10925074
Alignment:
Q  146 gacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtct 194  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  10925122 gacaagtgcaccaaatcgtatcaagtaataaagtagtaagttatcgtct 10925074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 3094227 - 3094189
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtag 181  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  3094227 attgacaagagcaccaaatcgtaacaagtaataaagtag 3094189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 4091357 - 4091398
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  4091357 attggcaagtgtaccaaatcgtaacaagtaataaagtagtaa 4091398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 7494544 - 7494503
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  7494544 attggcaagtgcaccaaatcgtaacaagtaataaattagtaa 7494503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 18494566 - 18494607
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  18494566 attggcaagtgcaccaaatcgtaacaagtaataaggtagtaa 18494607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 7325835 - 7325871
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagt 179  Q
    ||||||||||||| |||||||||||||||||||||||    
T  7325835 attgacaagtgcatcaaatcgtaacaagtaataaagt 7325871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 9404615 - 9404650
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagta 183  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9404615 caagtgcaccaaatcgtgacaagtaataaagtagta 9404650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 14074530 - 14074495
Alignment:
Q  149 aagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||| |||||||||||||||||||||||||||    
T  14074530 aagtgcacaaaatcgtaacaagtaataaagtagtaa 14074495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 14384558 - 14384523
Alignment:
Q  149 aagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||| |||||||||||||||||||||||||||    
T  14384558 aagtgcacaaaatcgtaacaagtaataaagtagtaa 14384523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 17971217 - 17971182
Alignment:
Q  164 taacaagtaataaagtagtaaattattgtctccaca 199  Q
    ||||||||||||||||||||| ||||||||||||||    
T  17971217 taacaagtaataaagtagtaagttattgtctccaca 17971182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 18497248 - 18497209
Alignment:
Q  145 tgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  18497248 tgacaagtgcaccaaatcgtaacaagtaacaatgtagtaa 18497209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 9974305 - 9974263
Alignment:
Q  142 tattgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| ||||||||||||||| |||||| |||||||||||||||    
T  9974305 tattaacaagtgcaccaaatggtaacatgtaataaagtagtaa 9974263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 12357718 - 12357764
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattat 189  Q
    |||| ||||||||||| ||||||||||||| ||||||||||| ||||    
T  12357718 attgtcaagtgcaccagatcgtaacaagtattaaagtagtaagttat 12357764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 9121037 - 9121078
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| ||||||| ||||||||||||||||||||| |||||||    
T  9121037 attgtcaagtgcgccaaatcgtaacaagtaataaggtagtaa 9121078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 9687091 - 9687132
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||| | |||||||||| |||||||||||||||||    
T  9687091 attgacaagtgtatcaaatcgtaataagtaataaagtagtaa 9687132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 7776367 - 7776403
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  7776367 caagtgcaccaaatcttaacaagtaacaaagtagtaa 7776403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 21473073 - 21473037
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  21473073 caagtgcaccaaatcataacaagttataaagtagtaa 21473037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 17320833 - 17320777
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    |||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  17320833 attggcaagtgcaccaaatcgtaataagtaataaagtagttagttattgtctccaca 17320777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 22727291 - 22727247
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatt 187  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  22727291 attgacaagtgcaccaaattgtaacaagtaataaagtagtaaatt 22727247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 13194330 - 13194289
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  13194330 attggcaagtgcaccaaatcgtaacaagtaataaagtagtaa 13194289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 13782458 - 13782417
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  13782458 attgacaagtgcaccaaatcgtaacaattaataaagtagtaa 13782417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 13789780 - 13789739
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  13789780 attgacaagtgcaccaaatcgtaacaattaataaagtagtaa 13789739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 13804035 - 13803994
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  13804035 attgacaagtgcaccaaatcgtaacaattaataaagtagtaa 13803994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 8037098 - 8037056
Alignment:
Q  142 tattgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  8037098 tattggcaagtgcactaaatcgtaacaagtaataaagtagtaa 8037056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 6177953 - 6177912
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  6177953 attgacaagtgcatcaaatcgtaacaagtaacaaagtagtaa 6177912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 11077017 - 11076968
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctcca 197  Q
    |||||||||||||  ||||||||||| |||||||||| ||||||||||||    
T  11077017 caagtgcaccaaactgtaacaagtaaaaaagtagtaagttattgtctcca 11076968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 9395432 - 9395472
Alignment:
Q  144 ttgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  9395432 ttgacaagtgcaacaaatcgtaacaagtaatgaagtagtaa 9395472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 15387209 - 15387173
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15387209 caagtgcaccaaatcgtaacaagcaataaagtagtaa 15387173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 15320130 - 15320095
Alignment:
Q  149 aagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||||||||||||||||| |||||||||||||    
T  15320130 aagtgcaccaaatcgtaacaagcaataaagtagtaa 15320095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 15576242 - 15576203
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagt 182  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  15576242 attggcaagtgcatcaaatcgtaacaagtaataaagtagt 15576203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 9942437 - 9942483
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattat 189  Q
    |||| ||||||||||||||  |||||||||||||||||||| |||||    
T  9942437 attggcaagtgcaccaaattataacaagtaataaagtagtatattat 9942483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 25367779 - 25367723
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||  |||||||||    
T  25367779 attgacaagtgcaccaaatcgaaacaagtaataaagtagtaagttacagtctccaca 25367723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 7023033 - 7023091
Alignment:
Q  142 tattgacaagtgcaccaaatcgtaacaagtaataaagtagtaa-attattgtctccaca 199  Q
    |||||| ||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  7023033 tattgataagtgcaccaaatcgtaacaaataataaagtagtaagtttattgtctccaca 7023091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 20717992 - 20717951
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  20717992 attggcaagtgcaccaaatcgtaacaagtaataaagtagtaa 20717951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 17331493 - 17331547
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctcca 197  Q
    ||||| |||||||||||||||||  ||||||||||||||||| |||| |||||||    
T  17331493 attgaaaagtgcaccaaatcgtagtaagtaataaagtagtaagttatagtctcca 17331547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 10450309 - 10450350
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  10450309 attggcaagtgcaccaaatcgtaacaaataataaagtagtaa 10450350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 22219998 - 22219957
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  22219998 attgacaagtgcactaaatcataacaagtaataaagtagtaa 22219957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 24580056 - 24580023
Alignment:
Q  149 aagtgcaccaaatcgtaacaagtaataaagtagt 182  Q
    ||||||||||||||||||||||||||||||||||    
T  24580056 aagtgcaccaaatcgtaacaagtaataaagtagt 24580023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 30797753 - 30797712
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  30797753 attggcaagtgcatcaaatcgtaacaagtaataaagtagtaa 30797712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 12805788 - 12805820
Alignment:
Q  152 tgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||||||||||||||||||||||||||||    
T  12805788 tgcaccaaatcgtaacaagtaataaagtagtaa 12805820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 24912141 - 24912197
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    ||||||||||||||||||| | ||||||||||||||||| || ||||  ||||||||    
T  24912141 attgacaagtgcaccaaattgaaacaagtaataaagtagcaagttatcatctccaca 24912197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 32023003 - 32022947
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    ||||||||||| || ||||||||||||||||||||||| ||| ||||  ||||||||    
T  32023003 attgacaagtgtactaaatcgtaacaagtaataaagtaataagttatcttctccaca 32022947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 39133640 - 39133691
Alignment:
Q  144 ttgacaagtgcaccaaatcgtaac-aagtaataaagtagtaaattattgtct 194  Q
    ||||||||||||||||||||||   ||||||||||||||| |||||||||||    
T  39133640 ttgacaagtgcaccaaatcgtacttaagtaataaagtagttaattattgtct 39133691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 7144467 - 7144409
Alignment:
Q  131 gaaagggcaactattgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattat 189  Q
    ||||||| || ||||| |||||| |||||||||||| || |||||||||||||| ||||    
T  7144467 gaaagggtaattattggcaagtgtaccaaatcgtaataaataataaagtagtaagttat 7144409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 13553468 - 13553509
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||| | |||||||||| |||||||||||||||||    
T  13553468 attgacaagtgtatcaaatcgtaataagtaataaagtagtaa 13553509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 51885936 - 51885895
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||||| ||||||| ||||||||||||||||||    
T  51885936 attggcaagtgcaccgaatcgtatcaagtaataaagtagtaa 51885895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 23420486 - 23420542
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccaca 199  Q
    |||| |||||| |||||||||||||||||||||||||||||| |||| |||||||||    
T  23420486 attggcaagtgtaccaaatcgtaacaagtaataaagtagtaagttatcgtctccaca 23420542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 30676719 - 30676676
Alignment:
Q  144 ttgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatt 187  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  30676719 ttgacaagttcaccaaatcgtaacaagtaataaagtagtaaatt 30676676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 27682982 - 27682941
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  27682982 attgacaagtgcaccaaaccgtaacaagtaataaagtagtaa 27682941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 34522173 - 34522132
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  34522173 attggcaagtgcaccaaatcgtaacaagtaataaaatagtaa 34522132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 27550147 - 27550209
Alignment:
Q  129 acgaaagggcaactattgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgt 192  Q
    ||||||||| || ||||||||| ||| |||||| |||| ||||||||||||||||| |||||||    
T  27550147 acgaaagggaaa-tattgacaattgctccaaatggtaataagtaataaagtagtaagttattgt 27550209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 13153667 - 13153609
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccacagg 201  Q
    ||||||| ||||||||||||  |||||||||||||  |||| ||||| |||||||||||    
T  13153667 attgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagg 13153609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 17836800 - 17836841
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| ||||||||||||||| |||||||||| ||||||||||    
T  17836800 attggcaagtgcaccaaatcataacaagtaagaaagtagtaa 17836841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 25664823 - 25664864
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| ||||||||||||||| || ||||||||||||||||||    
T  25664823 attggcaagtgcaccaaatcatatcaagtaataaagtagtaa 25664864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 14581385 - 14581341
Alignment:
Q  144 ttgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatta 188  Q
    |||||||||||||||||| |||  ||||||||||||| |||||||    
T  14581385 ttgacaagtgcaccaaattgtactaagtaataaagtaataaatta 14581341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 12957609 - 12957568
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  12957609 attgacaagtgcactaaatcgtaacaagtaataaagtagtaa 12957568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 28075719 - 28075670
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgt 192  Q
    |||||||||| |||||||| |||||||||||||||||||||| |||||||    
T  28075719 attgacaagtacaccaaattgtaacaagtaataaagtagtaagttattgt 28075670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 18790109 - 18790061
Alignment:
Q  146 gacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtct 194  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  18790109 gacaagtgcaccaaatcgtatcaagtaataaagtagtaagttatcgtct 18790061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 13528954 - 13529008
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctcca 197  Q
    ||||| |||||||||||||| ||| ||||||||||||||||| |||| |||||||    
T  13528954 attgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca 13529008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 13618493 - 13618547
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctcca 197  Q
    ||||| |||||||||||||| ||| ||||||||||||||||| |||| |||||||    
T  13618493 attgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca 13618547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 13803108 - 13803149
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  13803108 attgacaagtgcatcaaatcgtaacaagtaataaaatagtaa 13803149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 32240499 - 32240458
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  32240499 attggcaagtgcaccaaattgtaacaagtaataaagtagtaa 32240458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 26853652 - 26853620
Alignment:
Q  152 tgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||||||||||||||||||||||||||||    
T  26853652 tgcaccaaatcgtaacaagtaataaagtagtaa 26853620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 28900142 - 28900181
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagt 182  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  28900142 attgacaagtacaccaaattgtaacaagtaataaagtagt 28900181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 32478445 - 32478492
Alignment:
Q  149 aagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctcc 196  Q
    |||| ||| |||||||  ||||||||||||||||||||||||||||||    
T  32478445 aagttcactaaatcgttccaagtaataaagtagtaaattattgtctcc 32478492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 27117427 - 27117468
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| ||| |||||||||||||| ||||||||||||||||||    
T  27117427 attggcaaatgcaccaaatcgtatcaagtaataaagtagtaa 27117468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 10012 - 9968
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatt 187  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||    
T  10012 attggcaaatgcaccaaatcgtaacaagtaataaagtagtaaatt 9968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 33913408 - 33913452
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatt 187  Q
    |||| |||||||||||||| |||||||||||||||||||||||||    
T  33913408 attggcaagtgcaccaaattgtaacaagtaataaagtagtaaatt 33913452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 25918097 - 25918138
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  25918097 attgacaagtgcaccaaattgtaacaagtaataacgtagtaa 25918138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 8839717 - 8839666
Alignment:
Q  144 ttgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctc 195  Q
    |||||||||||| |||| ||||| ||||||||||||||||| |||| |||||    
T  8839717 ttgacaagtgcatcaaaacgtaataagtaataaagtagtaagttatcgtctc 8839666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 14419387 - 14419353
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaa 177  Q
    |||| ||||||||||||||||||||||||||||||    
T  14419387 attggcaagtgcaccaaatcgtaacaagtaataaa 14419353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 5631512 - 5631549
Alignment:
Q  147 acaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  5631512 acaagtgcaccaaatcgtaccaagtaataaattagtaa 5631549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 22991546 - 22991586
Alignment:
Q  149 aagtgcaccaaatcgtaacaagtaataaagtagtaaattat 189  Q
    ||||||| | |||| ||||||||||||||||||||||||||    
T  22991546 aagtgcatctaatcataacaagtaataaagtagtaaattat 22991586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 16617460 - 16617499
Alignment:
Q  145 tgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  16617460 tgacaagtgcaccaaatcgtaactagtaataaagtagtaa 16617499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 17029317 - 17029260
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa-attattgtctccaca 199  Q
    |||| ||||||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  17029317 attggcaagtgcaccaaatcgtaacaagaaataaaatagtaattttattgtctccaca 17029260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 19571096 - 19571060
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||||||||||||||||| ||||||||||||||    
T  19571096 caagtgcaccaaatcgtaacaaataataaagtagtaa 19571060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 16621482 - 16621521
Alignment:
Q  145 tgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  16621482 tgacaagtgcaccaaatcgtaactagtaataaaatagtaa 16621521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 11273695 - 11273736
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||| ||||| ||||||||||||||||||||||    
T  11273695 attggcaagtgcatcaaattgtaacaagtaataaagtagtaa 11273736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 20715888 - 20715847
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||||| |||| ||||||||| |||||||    
T  20715888 attgacaagtgcaccaaattgtaataagtaataaggtagtaa 20715847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 25682200 - 25682159
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| ||||||||| |||||||||||||||||||| ||||||    
T  25682200 attggcaagtgcactaaatcgtaacaagtaataaaatagtaa 25682159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 180
Target Start/End: Original strand, 26327884 - 26327921
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagta 180  Q
    |||||||||||||||| || ||||||||||||||||||    
T  26327884 attgacaagtgcaccacatggtaacaagtaataaagta 26327921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 19443290 - 19443342
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccacag 200  Q
    ||||||| ||||||||| ||| ||||||||||||| | ||||||||| |||||    
T  19443290 caagtgccccaaatcgttacaggtaataaagtagtgagttattgtcttcacag 19443342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 24518998 - 24518962
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||| | ||||||||||||||||||||||||||||    
T  24518998 caagtgtatcaaatcgtaacaagtaataaagtagtaa 24518962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 7545 - 7583
Alignment:
Q  146 gacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  7545 gacaagtgcaccaaatcataacaagtaataaagtagtaa 7583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 10564 - 10604
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagta 183  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  10564 attgacaagtgcaccaaatcataacaagtaataatgtagta 10604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 2026 - 2070
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatt 187  Q
    |||| |||||||||||||||||||||| || ||||||||||||||    
T  2026 attggcaagtgcaccaaatcgtaacaaatattaaagtagtaaatt 2070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 2191 - 2235
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatt 187  Q
    |||| |||||||||||||||||||||| || ||||||||||||||    
T  2191 attggcaagtgcaccaaatcgtaacaaatattaaagtagtaaatt 2235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 78573 - 78607
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaa 177  Q
    |||||||||||||||||||||||||||||| ||||    
T  78573 attgacaagtgcaccaaatcgtaacaagtagtaaa 78607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0999 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 2932 - 2875
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaaattattgtctccacag 200  Q
    ||||||| ||||||||||||  |||||||||||||  |||| ||||| ||||||||||    
T  2932 attgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacag 2875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 36503 - 36544
Alignment:
Q  143 attgacaagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||| |||||||||||||||  ||||||||||||||||||||    
T  36503 attggcaagtgcaccaaatcacaacaagtaataaagtagtaa 36544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 1102 - 1058
Alignment:
Q  144 ttgacaagtgcaccaaatcgtaacaagtaataaagtagtaaatta 188  Q
    |||||||||||||||||| |||  ||||||||||||| |||||||    
T  1102 ttgacaagtgcaccaaattgtactaagtaataaagtaataaatta 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 9947 - 9911
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaa 184  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  9947 caagtgcatcaaattgtaacaagtaataaagtagtaa 9911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 32905 - 32853
Alignment:
Q  148 caagtgcaccaaatcgtaacaagtaataaagtagtaaatt-attgtctccaca 199  Q
    |||||| ||||||||||| |||||||||||||||| | || ||||||||||||    
T  32905 caagtgtaccaaatcgtaccaagtaataaagtagttagttaattgtctccaca 32853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University