View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6339_low_7 (Length: 594)
Name: NF6339_low_7
Description: NF6339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6339_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 14 - 578
Target Start/End: Complemental strand, 13657351 - 13656785
Alignment:
| Q |
14 |
gaacatgaacttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagtatggg |
113 |
Q |
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||||||||| ||||||||||||||| || | | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
13657351 |
gaacatgaagttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgtatggg |
13657252 |
T |
|
| Q |
114 |
gcagagccaacccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnnn--gttagaattattgtttgtaaaattta |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| || |
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| T |
13657251 |
gcagagccaacccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaatcta |
13657152 |
T |
|
| Q |
212 |
atgaaaaataatttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtatt |
311 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13657151 |
atgaaaaataatttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtatt |
13657052 |
T |
|
| Q |
312 |
gatacacaaatgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgcatgcttgaacactatcatc |
411 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13657051 |
gatacacaaatgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgcatgcttgaacactatcatc |
13656952 |
T |
|
| Q |
412 |
ttattttggatgaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctatatcaa |
511 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656951 |
ttattttggattaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctatatcaa |
13656852 |
T |
|
| Q |
512 |
cacattggtttccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttac |
578 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656851 |
cacattggtttccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttac |
13656785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 14 - 578
Target Start/End: Complemental strand, 13715993 - 13715427
Alignment:
| Q |
14 |
gaacatgaacttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagtatggg |
113 |
Q |
| |
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||||||||| ||||||||||||||| || | | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
13715993 |
gaacatgaagttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgtatggg |
13715894 |
T |
|
| Q |
114 |
gcagagccaacccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnnn--gttagaattattgtttgtaaaattta |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| || |
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| T |
13715893 |
gcagagccaacccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaatcta |
13715794 |
T |
|
| Q |
212 |
atgaaaaataatttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtatt |
311 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715793 |
atgaaaaataatttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgtatt |
13715694 |
T |
|
| Q |
312 |
gatacacaaatgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgcatgcttgaacactatcatc |
411 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13715693 |
gatacacaaatgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgcatgcttgaacactatcatc |
13715594 |
T |
|
| Q |
412 |
ttattttggatgaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctatatcaa |
511 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715593 |
ttattttggattaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctatatcaa |
13715494 |
T |
|
| Q |
512 |
cacattggtttccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttac |
578 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715493 |
cacattggtttccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttac |
13715427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 26765152 - 26765191
Alignment:
| Q |
203 |
taaaatttaatgaaaaataatttttgttggtagatctaaa |
242 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||| |
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| T |
26765152 |
taaaatttaatgaaaaataatttttgttggtgggtctaaa |
26765191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 18732352 - 18732314
Alignment:
| Q |
196 |
ttgtttgtaaaatttaatgaaaaataat-ttttgttggt |
233 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
18732352 |
ttgtttgtaaaatttaatgaaaaataatgttttgttggt |
18732314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 41872428 - 41872461
Alignment:
| Q |
196 |
ttgtttgtaaaatttaatgaaaaataatttttgt |
229 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
41872428 |
ttgtttataaaatttaatgaaaaataatttttgt |
41872461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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